FvH4_6g25780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000195
Physical Location & Seq
Reverse (-)
19749137 .. 19750231
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25780.t1

Sequence Viewer

Length: 1095 bp
ATGAGCAATCTCCTCAAGATCAAGTGTGAGAGCGGAGACACTCATCCATTGCATAATTGTTTGCTCAATTTAAAGCATCATGTGAGAGTGTCGGTCCAATCATGGATTATGTCAAAGCTAGCATCCTTCAAGAGCAACATCGCACCACTTTATATTTGCAAAGAGCCTTTCTTTGATCAAGTGGAGCATATTCCAAGAGAAGAAGTGTACATCAATCTTGAGCATGAGTCTTTAATTCAAATTAAAGATGATGATAGTGATGGTGATGTACAAGAAAGTGAGCTTGGTTATGAGAGTTCAAATGCAAGTGAGGTGAGAGACTACACTTCTACGGAATGGGTGGAATATTGGAAATGTAGGCTTCCTAATAGTGGAGAGCTACTTGAAGATGATTCCGAAGAGAAGGATGTCTTGTCTTATGTGGAGGATGAGTCCTTGTTTAGTGAAGAGGATACGAAGCTTGAGGTCCTACACTACAATCTCTTGTGTATTGAGGCGGGATTTGAGCAAGATTTGGAGGATGAATTGTCAAATGAGGAGGATGTGGAGCTTCAATTCATATATCACAATCCTTTATTCATTGAGGGCGATGTTCCCAAAGAGGAGGAGAGTTCTTTGGTGCCTTGTGATGATAAAGATGTTGAAGAGTCTAGGACTTTCTCTCCTCCCACACCCATGGAGATCCATCATGAGCTTCCCAAGGTGAATTGTAGAACCTTGAGCACATTTGTACTTAATGAGAAGATTGAGCTTCAGGTGATCTTACCTCTCAATCCACATTTAAGTGGTCTATGGTTCTACAATGAGGTAATAGATTGGAAAGGAAATGGAGCTCTTGTGATCAAACTTCCCCATCACTTCCAAGAGCCTCTACCACCTATTGTTCCTATGAGCACCATTTCTACATCTATCTTGAAGGAGAAGGTAAGGATGGCTCCTCGAAGTAGAATTGAGAAGAGGAAAGCTAAGAGGCTACTCTTTTGGCCTCAAACTGGAGTATTCTTTTGTAGCTCCTGGTCATGCCTCTATGATATGTCAAGGGTTCCCTTAGCCCCTAACAATAGGGTCGTCGCACTTGAGAAGTATCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

42.14

Weight (kDa)

4.74

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 619
AccBSI CCGCTC 1 cut(s) 33
AciI CCGC 2 cut(s) 33, 497
AclWI GGATC 1 cut(s) 676
AcuI CTGAAG 1 cut(s) 737
AfaI GTAC 3 cut(s) 209, 270, 732
AfiI CCNNNNNNNGG 2 cut(s) 371, 992
AgsI TTSAA 7 cut(s) 130, 239, 300, 386, 554, 644, 916
AjnI CCWGG 1 cut(s) 1013
AjuI GAANNNNNNNTTGG 2 cut(s) 267, 299
Alw21I GWGCWC 3 cut(s) 725, 835, 896
Alw26I GTCTC 2 cut(s) 30, 312
AlwI GGATC 1 cut(s) 676
AoxI GGCC 1 cut(s) 983
AspS9I GGNCC 2 cut(s) 94, 466
AsuHPI GGTGA 4 cut(s) 275, 325, 715, 769
AsuNHI GCTAGC 1 cut(s) 118
AvaII GGWCC 2 cut(s) 94, 466
BanI GGYRCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 835
Bbv12I GWGCWC 3 cut(s) 725, 835, 896
BccI CCATC 4 cut(s) 254, 693, 861, 925
BciT130I CCWGG 1 cut(s) 1015
BciVI GTATCC 2 cut(s) 445, 1095
BclI TGATCA 2 cut(s) 175, 840
BcoDI GTCTC 2 cut(s) 30, 312
BfaI CTAG 2 cut(s) 119, 651
BfuI GTATCC 2 cut(s) 445, 1095
Bme1390I CCNGG 1 cut(s) 1015
Bme18I GGWCC 2 cut(s) 94, 466
BmgT120I GGNCC 2 cut(s) 94, 466
BmiI GGNNCC 3 cut(s) 621, 936, 1044
BmrFI CCNGG 1 cut(s) 1015
BmsI GCATC 2 cut(s) 85, 131
BmtI GCTAGC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 1014
Bpu10I CCTNAGC 1 cut(s) 1048
BpuEI CTTGAG 3 cut(s) 239, 482, 739
BsaJI CCNNGG 2 cut(s) 675, 699
BsaXI ACNNNNNCTCC 6 cut(s) 416, 446, 646, 676, 822, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 992
Bse1I ACTGG 1 cut(s) 997
Bse3DI GCAATG 1 cut(s) 47
BseBI CCWGG 1 cut(s) 1015
BseDI CCNNGG 2 cut(s) 675, 699
BseGI GGATG 7 cut(s) 43, 122, 412, 433, 526, 547, 936
BseLI CCNNNNNNNGG 2 cut(s) 371, 992
BseMI GCAATG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 997
BseRI GAGGAG 5 cut(s) 551, 617, 620, 654, 927
BshFI GGCC 1 cut(s) 985
BshNI GGYRCC 1 cut(s) 619
BsiHKAI GWGCWC 3 cut(s) 725, 835, 896
BslI CCNNNNNNNGG 2 cut(s) 371, 992
BsmAI GTCTC 2 cut(s) 30, 312
BsnI GGCC 1 cut(s) 985
Bsp1286I GDGCHC 3 cut(s) 725, 835, 896
Bsp1407I TGTACA 2 cut(s) 207, 268
Bsp143I GATC 5 cut(s) 18, 175, 681, 759, 840
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 2 cut(s) 33, 497
BspANI GGCC 1 cut(s) 985
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 3 cut(s) 621, 936, 1044
BspOI GCTAGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 676
BspT107I GGYRCC 1 cut(s) 619
BsrBI CCGCTC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 47
BsrGI TGTACA 2 cut(s) 207, 268
BsrI ACTGG 1 cut(s) 997
BssECI CCNNGG 2 cut(s) 675, 699
BssMI GATC 5 cut(s) 18, 175, 681, 759, 840
BssT1I CCWWGG 2 cut(s) 675, 699
Bst2UI CCWGG 1 cut(s) 1015
Bst6I CTCTTC 4 cut(s) 393, 441, 639, 950
BstAUI TGTACA 2 cut(s) 207, 268
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 966, 1048
BstDSI CCRYGG 1 cut(s) 675
BstF5I GGATG 7 cut(s) 43, 122, 412, 433, 526, 547, 936
BstKTI GATC 5 cut(s) 21, 178, 684, 762, 843
BstMAI GTCTC 2 cut(s) 30, 312
BstMBI GATC 5 cut(s) 18, 175, 681, 759, 840
BstNI CCWGG 1 cut(s) 1015
BstSCI CCNGG 1 cut(s) 1013
BstX2I RGATCY 1 cut(s) 681
BstXI CCANNNNNNTGG 1 cut(s) 676
BstYI RGATCY 1 cut(s) 681
BsuI GTATCC 2 cut(s) 445, 1095
BsuRI GGCC 1 cut(s) 985
BtgI CCRYGG 1 cut(s) 675
BtgZI GCGATG 2 cut(s) 124, 603
BtsCI GGATG 7 cut(s) 43, 122, 412, 433, 526, 547, 936
Cac8I GCNNGC 1 cut(s) 120
CciI TCATGA 1 cut(s) 688
Cfr13I GGNCC 2 cut(s) 94, 466
Csp6I GTAC 3 cut(s) 208, 269, 731
CviAII CATG 6 cut(s) 80, 102, 224, 676, 689, 1020
CviQI GTAC 3 cut(s) 208, 269, 731
DdeI CTNAG 2 cut(s) 966, 1048
DpnI GATC 5 cut(s) 20, 177, 683, 761, 842
DpnII GATC 5 cut(s) 18, 175, 681, 759, 840
DraI TTTAAA 1 cut(s) 72
Eam1104I CTCTTC 4 cut(s) 393, 441, 639, 950
EarI CTCTTC 4 cut(s) 393, 441, 639, 950
Ecl136II GAGCTC 1 cut(s) 833
Eco130I CCWWGG 2 cut(s) 675, 699
Eco24I GRGCYC 1 cut(s) 835
Eco47I GGWCC 2 cut(s) 94, 466
Eco53kI GAGCTC 1 cut(s) 833
Eco57I CTGAAG 1 cut(s) 737
EcoICRI GAGCTC 1 cut(s) 833
EcoO109I RGGNCCY 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 1013
EcoT14I CCWWGG 2 cut(s) 675, 699
EcoT38I GRGCYC 1 cut(s) 835
ErhI CCWWGG 2 cut(s) 675, 699
FaeI CATG 6 cut(s) 83, 105, 227, 679, 692, 1023
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 6 cut(s) 79, 101, 223, 675, 688, 1019
FauI CCCGC 1 cut(s) 490
FbaI TGATCA 2 cut(s) 175, 840
FokI GGATG 7 cut(s) 30, 109, 419, 440, 533, 554, 943
FriOI GRGCYC 1 cut(s) 835
FspBI CTAG 2 cut(s) 119, 651
GsuI CTGGAG 1 cut(s) 1014
HaeIII GGCC 1 cut(s) 985
Hin1II CATG 6 cut(s) 83, 105, 227, 679, 692, 1023
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 4 cut(s) 227, 392, 431, 647
HphI GGTGA 4 cut(s) 275, 325, 715, 769
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 5 cut(s) 16, 130, 218, 689, 913
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 1073
HpyAV CCTTC 4 cut(s) 136, 397, 910, 916
HpyCH4V TGCA 3 cut(s) 52, 159, 305
HpyF3I CTNAG 2 cut(s) 966, 1048
Hsp92II CATG 6 cut(s) 83, 105, 227, 679, 692, 1023
Ksp22I TGATCA 2 cut(s) 175, 840
Kzo9I GATC 5 cut(s) 18, 175, 681, 759, 840
LmnI GCTCC 5 cut(s) 184, 547, 830, 940, 1016
LpnPI CCDG 4 cut(s) 740, 978, 1000, 1027
LweI GCATC 2 cut(s) 85, 131
MaeI CTAG 2 cut(s) 119, 651
MalI GATC 5 cut(s) 20, 177, 683, 761, 842
MbiI CCGCTC 1 cut(s) 33
MboI GATC 5 cut(s) 18, 175, 681, 759, 840
MboII GAAGA 7 cut(s) 212, 398, 410, 458, 656, 754, 967
MflI RGATCY 1 cut(s) 681
MhlI GDGCHC 3 cut(s) 725, 835, 896
MluCI AATT 8 cut(s) 55, 67, 234, 240, 524, 554, 706, 948
MlyI GAGTC 3 cut(s) 236, 440, 656
MseI TTAA 5 cut(s) 71, 233, 243, 735, 782
MslI CAYNNNNRTG 2 cut(s) 674, 783
MspR9I CCNGG 1 cut(s) 1015
MvaI CCWGG 1 cut(s) 1015
NcoI CCATGG 1 cut(s) 675
NdeII GATC 5 cut(s) 18, 175, 681, 759, 840
NheI GCTAGC 1 cut(s) 118
NlaIII CATG 6 cut(s) 83, 105, 227, 679, 692, 1023
NlaIV GGNNCC 3 cut(s) 621, 936, 1044
PagI TCATGA 1 cut(s) 688
PfeI GAWTC 1 cut(s) 392
PleI GAGTC 3 cut(s) 235, 439, 655
PpsI GAGTC 3 cut(s) 235, 439, 655
PpuMI RGGWCCY 1 cut(s) 466
Psp124BI GAGCTC 1 cut(s) 835
Psp5II RGGWCCY 1 cut(s) 466
Psp6I CCWGG 1 cut(s) 1013
PspGI CCWGG 1 cut(s) 1013
PspN4I GGNNCC 3 cut(s) 621, 936, 1044
PspPI GGNCC 2 cut(s) 94, 466
PspPPI RGGWCCY 1 cut(s) 466
PsuI RGATCY 1 cut(s) 681
RsaI GTAC 3 cut(s) 209, 270, 732
RsaNI GTAC 3 cut(s) 208, 269, 731
RseI CAYNNNNRTG 2 cut(s) 674, 783
SacI GAGCTC 1 cut(s) 835
SaqAI TTAA 5 cut(s) 71, 233, 243, 735, 782
Sau3AI GATC 5 cut(s) 18, 175, 681, 759, 840
Sau96I GGNCC 2 cut(s) 94, 466
SchI GAGTC 3 cut(s) 236, 440, 656
ScrFI CCNGG 1 cut(s) 1015
SduI GDGCHC 3 cut(s) 725, 835, 896
SfaNI GCATC 2 cut(s) 85, 131
SinI GGWCC 2 cut(s) 94, 466
SmiMI CAYNNNNRTG 2 cut(s) 674, 783
SmlI CTYRAG 5 cut(s) 14, 218, 461, 718, 1076
SmoI CTYRAG 5 cut(s) 14, 218, 461, 718, 1076
Sse9I AATT 8 cut(s) 55, 67, 234, 240, 524, 554, 706, 948
SsiI CCGC 2 cut(s) 33, 497
SspI AATATT 1 cut(s) 347
SspMI CTAG 2 cut(s) 119, 651
SstI GAGCTC 1 cut(s) 835
StyD4I CCNGG 1 cut(s) 1013
StyI CCWWGG 2 cut(s) 675, 699
TaqI TCGA 1 cut(s) 940
TaqII GACCGA 1 cut(s) 82
TasI AATT 8 cut(s) 55, 67, 234, 240, 524, 554, 706, 948
TatI WGTACW 3 cut(s) 207, 268, 730
TfiI GAWTC 1 cut(s) 392
Tru1I TTAA 5 cut(s) 71, 233, 243, 735, 782
Tru9I TTAA 5 cut(s) 71, 233, 243, 735, 782
TspDTI ATGAA 3 cut(s) 537, 547, 568
TspGWI ACGGA 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 94, 466
XspI CTAG 2 cut(s) 119, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.