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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 57 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1004 |
| AciI | CCGC | 1 cut(s) | 764 |
| AclWI | GGATC | 3 cut(s) | 12, 782, 895 |
| AcsI | RAATTY | 1 cut(s) | 628 |
| AcuI | CTGAAG | 1 cut(s) | 750 |
| AfaI | GTAC | 3 cut(s) | 182, 209, 978 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 369, 1004 |
| AflIII | ACRYGT | 1 cut(s) | 1254 |
| AgeI | ACCGGT | 1 cut(s) | 670 |
| AgsI | TTSAA | 6 cut(s) | 293, 531, 578, 608, 635, 773 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 600, 632, 1133, 1165 |
| Alw21I | GWGCWC | 1 cut(s) | 944 |
| Alw26I | GTCTC | 2 cut(s) | 645, 860 |
| AlwI | GGATC | 3 cut(s) | 12, 782, 895 |
| AoxI | GGCC | 1 cut(s) | 804 |
| ApoI | RAATTY | 1 cut(s) | 628 |
| AsiGI | ACCGGT | 1 cut(s) | 670 |
| AspA2I | CCTAGG | 1 cut(s) | 275 |
| AspS9I | GGNCC | 1 cut(s) | 239 |
| AsuC2I | CCSGG | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 6 cut(s) | 74, 144, 472, 602, 1039, 1200 |
| AvaII | GGWCC | 1 cut(s) | 239 |
| AvrII | CCTAGG | 1 cut(s) | 275 |
| BbsI | GAAGAC | 1 cut(s) | 1213 |
| Bbv12I | GWGCWC | 1 cut(s) | 944 |
| BccI | CCATC | 5 cut(s) | 15, 208, 292, 912, 1080 |
| BciVI | GTATCC | 1 cut(s) | 1317 |
| BclI | TGATCA | 1 cut(s) | 511 |
| BcnI | CCSGG | 1 cut(s) | 185 |
| BcoDI | GTCTC | 2 cut(s) | 645, 860 |
| BfaI | CTAG | 6 cut(s) | 276, 302, 356, 456, 750, 1158 |
| BfuI | GTATCC | 1 cut(s) | 1317 |
| BlnI | CCTAGG | 1 cut(s) | 275 |
| Bme1390I | CCNGG | 1 cut(s) | 185 |
| Bme18I | GGWCC | 1 cut(s) | 239 |
| BmgT120I | GGNCC | 1 cut(s) | 239 |
| BmiI | GGNNCC | 3 cut(s) | 241, 522, 669 |
| BmrFI | CCNGG | 1 cut(s) | 185 |
| BmsI | GCATC | 2 cut(s) | 562, 751 |
| BpiI | GAAGAC | 1 cut(s) | 1213 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1270 |
| BpuEI | CTTGAG | 6 cut(s) | 402, 470, 482, 821, 1065, 1151 |
| BpuMI | CCSGG | 1 cut(s) | 185 |
| Bsa29I | ATCGAT | 1 cut(s) | 1032 |
| BsaJI | CCNNGG | 5 cut(s) | 143, 275, 816, 894, 918 |
| BsaWI | WCCGGW | 1 cut(s) | 670 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 369, 1004 |
| Bse118I | RCCGGY | 1 cut(s) | 670 |
| BseCI | ATCGAT | 1 cut(s) | 1032 |
| BseDI | CCNNGG | 5 cut(s) | 143, 275, 816, 894, 918 |
| BseGI | GGATG | 5 cut(s) | 26, 31, 225, 766, 890 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 369, 1004 |
| BseRI | GAGGAG | 3 cut(s) | 770, 873, 1192 |
| BshFI | GGCC | 1 cut(s) | 806 |
| BshTI | ACCGGT | 1 cut(s) | 670 |
| BshVI | ATCGAT | 1 cut(s) | 1032 |
| BsiHKAI | GWGCWC | 1 cut(s) | 944 |
| BsiSI | CCGG | 2 cut(s) | 185, 671 |
| BslFI | GGGAC | 1 cut(s) | 1251 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 369, 1004 |
| BsmAI | GTCTC | 2 cut(s) | 645, 860 |
| BsmFI | GGGAC | 1 cut(s) | 1251 |
| BsmI | GAATGC | 2 cut(s) | 148, 1147 |
| BsnI | GGCC | 1 cut(s) | 806 |
| Bsp1286I | GDGCHC | 1 cut(s) | 944 |
| Bsp143I | GATC | 7 cut(s) | 4, 28, 511, 580, 787, 900, 1029 |
| BspACI | CCGC | 1 cut(s) | 764 |
| BspANI | GGCC | 1 cut(s) | 806 |
| BspDI | ATCGAT | 1 cut(s) | 1032 |
| BspHI | TCATGA | 3 cut(s) | 256, 490, 556 |
| BspLI | GGNNCC | 3 cut(s) | 241, 522, 669 |
| BspPI | GGATC | 3 cut(s) | 12, 782, 895 |
| BspQI | GCTCTTC | 1 cut(s) | 768 |
| BsrFI | RCCGGY | 1 cut(s) | 670 |
| BssAI | RCCGGY | 1 cut(s) | 670 |
| BssECI | CCNNGG | 5 cut(s) | 143, 275, 816, 894, 918 |
| BssMI | GATC | 7 cut(s) | 4, 28, 511, 580, 787, 900, 1029 |
| BssT1I | CCWWGG | 3 cut(s) | 275, 816, 918 |
| Bst6I | CTCTTC | 3 cut(s) | 768, 819, 1169 |
| BstC8I | GCNNGC | 3 cut(s) | 336, 378, 411 |
| BstDEI | CTNAG | 2 cut(s) | 1107, 1270 |
| BstDSI | CCRYGG | 2 cut(s) | 143, 894 |
| BstEII | GGTNACC | 1 cut(s) | 1206 |
| BstF5I | GGATG | 5 cut(s) | 26, 31, 225, 766, 890 |
| BstKTI | GATC | 7 cut(s) | 7, 31, 514, 583, 790, 903, 1032 |
| BstMAI | GTCTC | 2 cut(s) | 645, 860 |
| BstMBI | GATC | 7 cut(s) | 4, 28, 511, 580, 787, 900, 1029 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 280, 323, 344, 365, 398, 451, 682, 775, 1151 |
| BstNSI | RCATGY | 2 cut(s) | 380, 1258 |
| BstPI | GGTNACC | 1 cut(s) | 1206 |
| BstSCI | CCNGG | 1 cut(s) | 183 |
| BstV2I | GAAGAC | 1 cut(s) | 1213 |
| BstX2I | RGATCY | 1 cut(s) | 900 |
| BstYI | RGATCY | 1 cut(s) | 900 |
| Bsu15I | ATCGAT | 1 cut(s) | 1032 |
| BsuI | GTATCC | 1 cut(s) | 1317 |
| BsuRI | GGCC | 1 cut(s) | 806 |
| BsuTUI | ATCGAT | 1 cut(s) | 1032 |
| BtgI | CCRYGG | 2 cut(s) | 143, 894 |
| BtsCI | GGATG | 5 cut(s) | 26, 31, 225, 766, 890 |
| Cac8I | GCNNGC | 3 cut(s) | 336, 378, 411 |
| CciI | TCATGA | 3 cut(s) | 256, 490, 556 |
| Cfr10I | RCCGGY | 1 cut(s) | 670 |
| Cfr13I | GGNCC | 1 cut(s) | 239 |
| ClaI | ATCGAT | 1 cut(s) | 1032 |
| Csp6I | GTAC | 3 cut(s) | 181, 208, 977 |
| CspAI | ACCGGT | 1 cut(s) | 670 |
| CviAII | CATG | 9 cut(s) | 257, 377, 491, 557, 599, 785, 908, 1225, 1255 |
| CviQI | GTAC | 3 cut(s) | 181, 208, 977 |
| DdeI | CTNAG | 2 cut(s) | 1107, 1270 |
| DpnI | GATC | 7 cut(s) | 6, 30, 513, 582, 789, 902, 1031 |
| DpnII | GATC | 7 cut(s) | 4, 28, 511, 580, 787, 900, 1029 |
| Eam1104I | CTCTTC | 3 cut(s) | 768, 819, 1169 |
| EarI | CTCTTC | 3 cut(s) | 768, 819, 1169 |
| Eco130I | CCWWGG | 3 cut(s) | 275, 816, 918 |
| Eco47I | GGWCC | 1 cut(s) | 239 |
| Eco57I | CTGAAG | 1 cut(s) | 750 |
| Eco91I | GGTNACC | 1 cut(s) | 1206 |
| EcoO65I | GGTNACC | 1 cut(s) | 1206 |
| EcoT14I | CCWWGG | 3 cut(s) | 275, 816, 918 |
| EcoT22I | ATGCAT | 2 cut(s) | 108, 843 |
| ErhI | CCWWGG | 3 cut(s) | 275, 816, 918 |
| FaeI | CATG | 9 cut(s) | 260, 380, 494, 560, 602, 788, 911, 1228, 1258 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1138, 1170, 1184, 1216 |
| FaqI | GGGAC | 1 cut(s) | 1251 |
| FatI | CATG | 9 cut(s) | 256, 376, 490, 556, 598, 784, 907, 1224, 1254 |
| FbaI | TGATCA | 1 cut(s) | 511 |
| FokI | GGATG | 5 cut(s) | 33, 38, 232, 773, 877 |
| FspBI | CTAG | 6 cut(s) | 276, 302, 356, 456, 750, 1158 |
| HaeIII | GGCC | 1 cut(s) | 806 |
| HapII | CCGG | 2 cut(s) | 185, 671 |
| Hin1II | CATG | 9 cut(s) | 260, 380, 494, 560, 602, 788, 911, 1228, 1258 |
| HindIII | AAGCTT | 2 cut(s) | 120, 411 |
| HinfI | GANTC | 7 cut(s) | 82, 97, 500, 725, 829, 1218, 1264 |
| HpaII | CCGG | 2 cut(s) | 185, 671 |
| HphI | GGTGA | 6 cut(s) | 74, 144, 472, 602, 1039, 1200 |
| Hpy188I | TCNGA | 2 cut(s) | 664, 730 |
| HpyAV | CCTTC | 3 cut(s) | 59, 530, 1129 |
| HpyCH4V | TGCA | 9 cut(s) | 106, 334, 376, 409, 676, 841, 863, 1058, 1145 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 280, 323, 344, 365, 398, 451, 682, 775, 1151 |
| HpyF3I | CTNAG | 2 cut(s) | 1107, 1270 |
| Hsp92II | CATG | 9 cut(s) | 260, 380, 494, 560, 602, 788, 911, 1228, 1258 |
| Ksp22I | TGATCA | 1 cut(s) | 511 |
| Kzo9I | GATC | 7 cut(s) | 4, 28, 511, 580, 787, 900, 1029 |
| LguI | GCTCTTC | 1 cut(s) | 768 |
| LmnI | GCTCC | 4 cut(s) | 12, 520, 766, 1049 |
| LpnPI | CCDG | 2 cut(s) | 198, 684 |
| LweI | GCATC | 2 cut(s) | 562, 751 |
| MaeI | CTAG | 6 cut(s) | 276, 302, 356, 456, 750, 1158 |
| MaeIII | GTNAC | 2 cut(s) | 110, 1206 |
| MalI | GATC | 7 cut(s) | 6, 30, 513, 582, 789, 902, 1031 |
| MboI | GATC | 7 cut(s) | 4, 28, 511, 580, 787, 900, 1029 |
| MfeI | CAATTG | 3 cut(s) | 308, 329, 404 |
| MflI | RGATCY | 1 cut(s) | 900 |
| MhlI | GDGCHC | 1 cut(s) | 944 |
| MluCI | AATT | 7 cut(s) | 136, 308, 329, 383, 404, 526, 628 |
| MlyI | GAGTC | 4 cut(s) | 106, 838, 1227, 1273 |
| Mph1103I | ATGCAT | 2 cut(s) | 108, 843 |
| MseI | TTAA | 7 cut(s) | 396, 794, 836, 954, 972, 1001, 1188 |
| MslI | CAYNNNNRTG | 2 cut(s) | 438, 846 |
| MspI | CCGG | 2 cut(s) | 185, 671 |
| MspR9I | CCNGG | 1 cut(s) | 185 |
| MunI | CAATTG | 3 cut(s) | 308, 329, 404 |
| Mva1269I | GAATGC | 2 cut(s) | 148, 1147 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 280, 323, 344, 365, 398, 451, 682, 775, 1151 |
| NciI | CCSGG | 1 cut(s) | 185 |
| NdeII | GATC | 7 cut(s) | 4, 28, 511, 580, 787, 900, 1029 |
| NlaIII | CATG | 9 cut(s) | 260, 380, 494, 560, 602, 788, 911, 1228, 1258 |
| NlaIV | GGNNCC | 3 cut(s) | 241, 522, 669 |
| NmeAIII | GCCGAG | 1 cut(s) | 118 |
| NmuCI | GTSAC | 1 cut(s) | 1206 |
| NsiI | ATGCAT | 2 cut(s) | 108, 843 |
| NspI | RCATGY | 2 cut(s) | 380, 1258 |
| PaeI | GCATGC | 1 cut(s) | 380 |
| PagI | TCATGA | 3 cut(s) | 256, 490, 556 |
| PciI | ACATGT | 1 cut(s) | 1254 |
| PciSI | GCTCTTC | 1 cut(s) | 768 |
| PctI | GAATGC | 2 cut(s) | 148, 1147 |
| PfeI | GAWTC | 3 cut(s) | 82, 500, 725 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1004 |
| PinAI | ACCGGT | 1 cut(s) | 670 |
| PleI | GAGTC | 4 cut(s) | 105, 837, 1226, 1272 |
| PpsI | GAGTC | 4 cut(s) | 105, 837, 1226, 1272 |
| PscI | ACATGT | 1 cut(s) | 1254 |
| PsiI | TTATAA | 1 cut(s) | 57 |
| PspEI | GGTNACC | 1 cut(s) | 1206 |
| PspN4I | GGNNCC | 3 cut(s) | 241, 522, 669 |
| PspPI | GGNCC | 1 cut(s) | 239 |
| PsuI | RGATCY | 1 cut(s) | 900 |
| RsaI | GTAC | 3 cut(s) | 182, 209, 978 |
| RsaNI | GTAC | 3 cut(s) | 181, 208, 977 |
| RseI | CAYNNNNRTG | 2 cut(s) | 438, 846 |
| SapI | GCTCTTC | 1 cut(s) | 768 |
| SaqAI | TTAA | 7 cut(s) | 396, 794, 836, 954, 972, 1001, 1188 |
| Sau3AI | GATC | 7 cut(s) | 4, 28, 511, 580, 787, 900, 1029 |
| Sau96I | GGNCC | 1 cut(s) | 239 |
| SchI | GAGTC | 4 cut(s) | 106, 838, 1227, 1273 |
| ScrFI | CCNGG | 1 cut(s) | 185 |
| SduI | GDGCHC | 1 cut(s) | 944 |
| SfaNI | GCATC | 2 cut(s) | 562, 751 |
| SinI | GGWCC | 1 cut(s) | 239 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 438, 846 |
| SmlI | CTYRAG | 7 cut(s) | 417, 449, 461, 800, 1080, 1130, 1298 |
| SmoI | CTYRAG | 7 cut(s) | 417, 449, 461, 800, 1080, 1130, 1298 |
| SphI | GCATGC | 1 cut(s) | 380 |
| Sse9I | AATT | 7 cut(s) | 136, 308, 329, 383, 404, 526, 628 |
| SsiI | CCGC | 1 cut(s) | 764 |
| SspI | AATATT | 1 cut(s) | 680 |
| SspMI | CTAG | 6 cut(s) | 276, 302, 356, 456, 750, 1158 |
| StyD4I | CCNGG | 1 cut(s) | 183 |
| StyI | CCWWGG | 3 cut(s) | 275, 816, 918 |
| TaqI | TCGA | 2 cut(s) | 583, 1032 |
| TasI | AATT | 7 cut(s) | 136, 308, 329, 383, 404, 526, 628 |
| TatI | WGTACW | 1 cut(s) | 207 |
| TfiI | GAWTC | 3 cut(s) | 82, 500, 725 |
| Tru1I | TTAA | 7 cut(s) | 396, 794, 836, 954, 972, 1001, 1188 |
| Tru9I | TTAA | 7 cut(s) | 396, 794, 836, 954, 972, 1001, 1188 |
| TseFI | GTSAC | 1 cut(s) | 1206 |
| Tsp45I | GTSAC | 1 cut(s) | 1206 |
| TspDTI | ATGAA | 5 cut(s) | 573, 587, 717, 732, 1213 |
| TspGWI | ACGGA | 2 cut(s) | 132, 911 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1004 |
| VpaK11BI | GGWCC | 1 cut(s) | 239 |
| XapI | RAATTY | 1 cut(s) | 628 |
| XbaI | TCTAGA | 1 cut(s) | 1157 |
| XceI | RCATGY | 2 cut(s) | 380, 1258 |
| XmaJI | CCTAGG | 1 cut(s) | 275 |
| XspI | CTAG | 6 cut(s) | 276, 302, 356, 456, 750, 1158 |
| Zsp2I | ATGCAT | 2 cut(s) | 108, 843 |