Rmu_sc0000147.1_g000108

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000147.1
OG0000195
Physical Location & Seq
Forward (+)
466918 .. 468009
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000147.1_g000108.1.cds

Sequence Viewer

Length: 1092 bp
atggatcaatggagctatggatgggatgacccaaggggatatgagcaagaaagtttttatggtggaggtcatcaagtgtggaattctcacgtgatcggttcaatgtcttctcgcaatgaaacttgtgctttttgtaattctccgtggcattcacgttttgagtgctctatgagatttgaatgcccaaattttatgcaagagtgtgagtacatgtatcaagagacatttgtacccgatgcatatccacaaaatgaagcttatgagcctaggaaggaattcgttgaaggactactagctcaattgcaagcctcccgagatcttttacatgcctctcaagaaaccacggttcccgaagcatatcctcatgagcaagcatatgagtctaggaagccttcccttgaagaaatactagctcaattgcaggcctcccaagctcaattgcaagtttctcaagagatgcttatacattccaatgagcaactagaggtgagtcttgcacaagagccacccttcacaatttttcatgagcatgaatctttctttgaccaagtggagcctatttcaagagaaaatgtacatgtcaagcatcttgagcaagagtcgtttatgcaaattgaagatgattatagtgatgttgatgtacaagaaagtgggcttggttatgaaagttccaatgcaagtggggtgagagattactcttcggcagaatgggtacaatctaagcttccaaatgaaggggagatacttgaagatgattccgaagaagaggatggcttgtctaatgaggaggatgcggagtttgaagtcctacaccataatcccttattcattgaggaggatgcggagcttcaagtcatatatcataatcctttattcattgaggccgatgttcccaaggaggaagagagtcaagcaatggtttgtgatgatgaagaagttgaagagccaaagactttctcgcctcctaaattcatggagatccatcatgagcttcccaaggtggagagtaggacattgagcatttacattcttaatgagaagattgggatcacggtacttttacctgtggtcaatatttctacaatgaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

41.99

Weight (kDa)

4.28

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 794, 842
AclWI GGATC 3 cut(s) 12, 973, 1055
AcsI RAATTY 4 cut(s) 82, 187, 275, 968
AcvI CACGTG 1 cut(s) 91
AfaI GTAC 6 cut(s) 209, 231, 576, 642, 714, 1056
AfiI CCNNNNNNNGG 1 cut(s) 734
AflIII ACRYGT 2 cut(s) 210, 577
AjuI GAANNNNNNNTTGG 2 cut(s) 639, 671
AluBI AGCT 8 cut(s) 15, 257, 296, 413, 434, 724, 847, 991
AluI AGCT 8 cut(s) 15, 257, 296, 413, 434, 724, 847, 991
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 3 cut(s) 12, 973, 1055
Ama87I CYCGRG 1 cut(s) 312
AoxI GGCC 2 cut(s) 423, 882
ApoI RAATTY 4 cut(s) 82, 187, 275, 968
Asp700I GAANNNNTTC 1 cut(s) 275
AspA2I CCTAGG 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 499, 697
AvaI CYCGRG 1 cut(s) 312
AvrII CCTAGG 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BbrPI CACGTG 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 3 cut(s) 15, 764, 990
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 5 cut(s) 267, 293, 384, 410, 482
BglII AGATCT 1 cut(s) 316
BlnI CCTAGG 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 312
BmiI GGNNCC 2 cut(s) 348, 555
BmsI GCATC 5 cut(s) 226, 447, 595, 781, 829
BpiI GAAGAC 1 cut(s) 99
BpuEI CTTGAG 3 cut(s) 318, 435, 611
BsaAI YACGTR 1 cut(s) 91
BsaBI GATNNNNATC 2 cut(s) 240, 1046
BsaJI CCNNGG 6 cut(s) 32, 143, 266, 342, 894, 996
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse3DI GCAATG 2 cut(s) 121, 921
Bse8I GATNNNNATC 2 cut(s) 240, 1046
BseDI CCNNGG 6 cut(s) 32, 143, 266, 342, 894, 996
BseGI GGATG 5 cut(s) 26, 31, 775, 796, 844
BseJI GATNNNNATC 2 cut(s) 240, 1046
BseLI CCNNNNNNNGG 1 cut(s) 734
BseMI GCAATG 2 cut(s) 121, 921
BseRI GAGGAG 2 cut(s) 800, 848
BshFI GGCC 2 cut(s) 425, 884
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 1 cut(s) 215
BsmI GAATGC 2 cut(s) 148, 185
BsnI GGCC 2 cut(s) 425, 884
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 167
Bsp1407I TGTACA 2 cut(s) 574, 640
Bsp143I GATC 5 cut(s) 4, 93, 316, 978, 1047
BspACI CCGC 2 cut(s) 794, 842
BspANI GGCC 2 cut(s) 425, 884
BspHI TCATGA 3 cut(s) 364, 523, 985
BspLI GGNNCC 2 cut(s) 348, 555
BspPI GGATC 3 cut(s) 12, 973, 1055
BspQI GCTCTTC 1 cut(s) 936
BsrDI GCAATG 2 cut(s) 121, 921
BsrGI TGTACA 2 cut(s) 574, 640
BssECI CCNNGG 6 cut(s) 32, 143, 266, 342, 894, 996
BssMI GATC 5 cut(s) 4, 93, 316, 978, 1047
BssT1I CCWWGG 4 cut(s) 32, 266, 894, 996
Bst4CI ACNGT 2 cut(s) 346, 1054
Bst6I CTCTTC 4 cut(s) 703, 759, 897, 936
BstAUI TGTACA 2 cut(s) 574, 640
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 306, 372, 423
BstDEI CTNAG 1 cut(s) 720
BstDSI CCRYGG 2 cut(s) 143, 342
BstF5I GGATG 5 cut(s) 26, 31, 775, 796, 844
BstKTI GATC 5 cut(s) 7, 96, 319, 981, 1050
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 5 cut(s) 4, 93, 316, 978, 1047
BstMWI GCNNNNNNNGC 2 cut(s) 431, 592
BstNSI RCATGY 3 cut(s) 214, 329, 581
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 2 cut(s) 316, 978
BstYI RGATCY 2 cut(s) 316, 978
BsuRI GGCC 2 cut(s) 425, 884
BtgI CCRYGG 2 cut(s) 143, 342
BtsCI GGATG 5 cut(s) 26, 31, 775, 796, 844
Cac8I GCNNGC 3 cut(s) 306, 372, 423
CciI TCATGA 3 cut(s) 364, 523, 985
Csp6I GTAC 6 cut(s) 208, 230, 575, 641, 713, 1055
CspCI CAANNNNNGTGG 2 cut(s) 661, 696
CviAII CATG 8 cut(s) 211, 326, 365, 524, 530, 578, 973, 986
CviQI GTAC 6 cut(s) 208, 230, 575, 641, 713, 1055
DdeI CTNAG 1 cut(s) 720
DpnI GATC 5 cut(s) 6, 95, 318, 980, 1049
DpnII GATC 5 cut(s) 4, 93, 316, 978, 1047
Eam1104I CTCTTC 4 cut(s) 703, 759, 897, 936
EarI CTCTTC 4 cut(s) 703, 759, 897, 936
Eco130I CCWWGG 4 cut(s) 32, 266, 894, 996
Eco147I AGGCCT 1 cut(s) 425
Eco72I CACGTG 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 312
EcoRI GAATTC 2 cut(s) 82, 275
EcoT14I CCWWGG 4 cut(s) 32, 266, 894, 996
EcoT22I ATGCAT 1 cut(s) 241
ErhI CCWWGG 4 cut(s) 32, 266, 894, 996
FaeI CATG 8 cut(s) 214, 329, 368, 527, 533, 581, 976, 989
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 8 cut(s) 210, 325, 364, 523, 529, 577, 972, 985
FauNDI CATATG 1 cut(s) 376
FokI GGATG 5 cut(s) 33, 38, 782, 803, 851
FspBI CTAG 5 cut(s) 267, 293, 384, 410, 482
HaeIII GGCC 2 cut(s) 425, 884
Hin1II CATG 8 cut(s) 214, 329, 368, 527, 533, 581, 976, 989
HindIII AAGCTT 2 cut(s) 255, 722
HinfI GANTC 6 cut(s) 380, 490, 533, 599, 755, 907
HphI GGTGA 2 cut(s) 499, 697
Hpy188I TCNGA 1 cut(s) 760
HpyAV CCTTC 5 cut(s) 265, 278, 402, 520, 728
HpyCH4III ACNGT 2 cut(s) 346, 1054
HpyCH4IV ACGT 2 cut(s) 90, 154
HpyCH4V TGCA 8 cut(s) 196, 239, 304, 421, 442, 497, 610, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 592
HpyF3I CTNAG 1 cut(s) 720
HpySE526I ACGT 2 cut(s) 90, 154
Hsp92II CATG 8 cut(s) 214, 329, 368, 527, 533, 581, 976, 989
Kzo9I GATC 5 cut(s) 4, 93, 316, 978, 1047
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 3 cut(s) 12, 553, 844
LpnPI CCDG 2 cut(s) 407, 1077
LweI GCATC 5 cut(s) 226, 447, 595, 781, 829
MaeI CTAG 5 cut(s) 267, 293, 384, 410, 482
MaeII ACGT 2 cut(s) 90, 154
MalI GATC 5 cut(s) 6, 95, 318, 980, 1049
MboI GATC 5 cut(s) 4, 93, 316, 978, 1047
MfeI CAATTG 3 cut(s) 299, 416, 437
MflI RGATCY 2 cut(s) 316, 978
MhlI GDGCHC 1 cut(s) 167
MlyI GAGTC 4 cut(s) 389, 499, 608, 916
Mph1103I ATGCAT 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 1 cut(s) 1032
MslI CAYNNNNRTG 2 cut(s) 471, 528
MunI CAATTG 3 cut(s) 299, 416, 437
Mva1269I GAATGC 2 cut(s) 148, 185
MwoI GCNNNNNNNGC 2 cut(s) 431, 592
NdeI CATATG 1 cut(s) 376
NdeII GATC 5 cut(s) 4, 93, 316, 978, 1047
NlaIII CATG 8 cut(s) 214, 329, 368, 527, 533, 581, 976, 989
NlaIV GGNNCC 2 cut(s) 348, 555
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 3 cut(s) 214, 329, 581
PagI TCATGA 3 cut(s) 364, 523, 985
PceI AGGCCT 1 cut(s) 425
PciI ACATGT 2 cut(s) 210, 577
PciSI GCTCTTC 1 cut(s) 936
PctI GAATGC 2 cut(s) 148, 185
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 533, 755
PleI GAGTC 4 cut(s) 388, 498, 607, 915
PmaCI CACGTG 1 cut(s) 91
PmlI CACGTG 1 cut(s) 91
PpsI GAGTC 4 cut(s) 388, 498, 607, 915
Ppu21I YACGTR 1 cut(s) 91
PscI ACATGT 2 cut(s) 210, 577
PspCI CACGTG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 348, 555
PsuI RGATCY 2 cut(s) 316, 978
RsaI GTAC 6 cut(s) 209, 231, 576, 642, 714, 1056
RsaNI GTAC 6 cut(s) 208, 230, 575, 641, 713, 1055
RseI CAYNNNNRTG 2 cut(s) 471, 528
SapI GCTCTTC 1 cut(s) 936
SaqAI TTAA 1 cut(s) 1032
Sau3AI GATC 5 cut(s) 4, 93, 316, 978, 1047
SchI GAGTC 4 cut(s) 389, 499, 608, 916
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 5 cut(s) 226, 447, 595, 781, 829
SmiMI CAYNNNNRTG 2 cut(s) 471, 528
SmlI CTYRAG 3 cut(s) 333, 450, 590
SmoI CTYRAG 3 cut(s) 333, 450, 590
SseBI AGGCCT 1 cut(s) 425
SsiI CCGC 2 cut(s) 794, 842
SspI AATATT 1 cut(s) 1075
SspMI CTAG 5 cut(s) 267, 293, 384, 410, 482
StuI AGGCCT 1 cut(s) 425
StyI CCWWGG 4 cut(s) 32, 266, 894, 996
TaaI ACNGT 2 cut(s) 346, 1054
TaiI ACGT 2 cut(s) 93, 157
TatI WGTACW 3 cut(s) 207, 574, 640
TfiI GAWTC 2 cut(s) 533, 755
Tru1I TTAA 1 cut(s) 1032
Tru9I TTAA 1 cut(s) 1032
TspGWI ACGGA 1 cut(s) 132
XapI RAATTY 4 cut(s) 82, 187, 275, 968
XceI RCATGY 3 cut(s) 214, 329, 581
XmaJI CCTAGG 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 5 cut(s) 267, 293, 384, 410, 482
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.