Rroxscaffold_4G00314030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000195
Physical Location & Seq
Forward (+)
37793459 .. 37794562
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00314030.1

Sequence Viewer

Length: 1044 bp
ATGGGCATGTCTCAAGAGACATTTGTATCCGAAGCATATCCTCATGAGCAAGCTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTAGCTCAATTGGAAGCCTCTAATGCTCAATTACAAGCCTCCCAAGCTCAATCTTCTCAAGAAATGATTTCACATTCCAATGAGCAACTTGAGCCTAGTCTTGCACAAGAGCCACCACTCACCATTTGCCATGACCAAGATTCTTTCTTTGATCAAGTGGAGCCTAATTCAAGAGAAGGAGTATTTTATGAGCATCATGAGCTAGATTTTCCTATTCAAGATCAAGAGGGTGATGTTCATATACAAGAAAGTGTGCTTGATTGTGGAAATTTTGATGCAAGTGGGGCGAGAGACTACATTTCGGAGGAATCGGTGCAATATTGGACTTCTAATCTTTGCAATGAAGAGGAGGTAGTTGAAGATGATTCCGAAGAAGAGAATAGCTTGTTTAGTGAGGAGGATGCAGAGCTTGAAGAGCTACACCATGATCCCTTAATCCTTGAGGCCAATATTCCCAAGGAGGAAGAGAGTCCTTTAATGCATTGTAACGATAAAGAAGTTGAAGAGACAAAGGTTTTCTCTCCTCCCACATCCACGGATATCCATCATGAGCTTCCCAAGGTAGAAAGTAGAACGTTGAGCACTTATGTACTTAATGAGAAGATTAAGCTTAAGGTACTTTTACCTCTCAATCCACCGTTTAGTGACCAATGTTTCTACAATGAGGTGACGAATTGGAAAGGAAGTGGAGCACTTGCACTTAACCCTTCACATCACACTCAAGAGCTTCTACCACCTATTGTTCCTACGAGCATCATTTCTACACCACTTTTGAAGGAGAGAGCAAGATTGGCTCCTAGAAGAAAAATTGAGAAGAAGAGGAAGATTAAGAAGCTCCACTTTTGGTCACCAATTGCAATATTCATGGATAGCTCTTGGTCTTGCCTCTATGACATGTCAAGGAGTCCCTTAGCCCCTAACAATAGGGTGGTCGCACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

39.64

Weight (kDa)

4.62

Isoelectric Point (pI)

66.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 662
AclWI GGATC 1 cut(s) 509
AcsI RAATTY 1 cut(s) 355
AfaI GTAC 2 cut(s) 678, 705
AflII CTTAAG 1 cut(s) 698
AflIII ACRYGT 1 cut(s) 981
AgsI TTSAA 7 cut(s) 80, 258, 305, 446, 500, 590, 862
Alw21I GWGCWC 2 cut(s) 671, 781
Alw26I GTCTC 4 cut(s) 11, 15, 372, 587
AlwI GGATC 1 cut(s) 509
AoxI GGCC 1 cut(s) 531
ApoI RAATTY 1 cut(s) 355
AspA2I CCTAGG 1 cut(s) 62
AsuHPI GGTGA 4 cut(s) 199, 329, 766, 927
AvrII CCTAGG 1 cut(s) 62
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
Bbv12I GWGCWC 2 cut(s) 671, 781
BccI CCATC 2 cut(s) 79, 639
BciVI GTATCC 2 cut(s) 37, 1044
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 4 cut(s) 11, 15, 372, 587
BfaI CTAG 5 cut(s) 63, 89, 183, 290, 885
BfrI CTTAAG 1 cut(s) 698
BfuI GTATCC 2 cut(s) 37, 1044
BlnI CCTAGG 1 cut(s) 62
BmiI GGNNCC 2 cut(s) 249, 882
BmsI GCATC 4 cut(s) 289, 352, 478, 849
Bpu10I CCTNAGC 1 cut(s) 997
BpuEI CTTGAG 4 cut(s) 129, 197, 548, 792
BsaBI GATNNNNATC 1 cut(s) 630
BsaJI CCNNGG 4 cut(s) 62, 543, 621, 645
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 1 cut(s) 630
BseDI CCNNGG 4 cut(s) 62, 543, 621, 645
BseGI GGATG 2 cut(s) 493, 617
BseJI GATNNNNATC 1 cut(s) 630
BseMI GCAATG 1 cut(s) 433
BseRI GAGGAG 3 cut(s) 449, 497, 600
BshFI GGCC 1 cut(s) 533
BsiHKAI GWGCWC 2 cut(s) 671, 781
BslFI GGGAC 1 cut(s) 978
BsmAI GTCTC 4 cut(s) 11, 15, 372, 587
BsmFI GGGAC 1 cut(s) 978
BsnI GGCC 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 671, 781
Bsp143I GATC 3 cut(s) 238, 307, 514
BspANI GGCC 1 cut(s) 533
BspHI TCATGA 3 cut(s) 43, 283, 634
BspLI GGNNCC 2 cut(s) 249, 882
BspPI GGATC 1 cut(s) 509
BspQI GCTCTTC 1 cut(s) 495
BspTI CTTAAG 1 cut(s) 698
BsrDI GCAATG 1 cut(s) 433
BssECI CCNNGG 4 cut(s) 62, 543, 621, 645
BssMI GATC 3 cut(s) 238, 307, 514
BssT1I CCWWGG 3 cut(s) 62, 543, 645
Bst4CI ACNGT 1 cut(s) 726
Bst6I CTCTTC 6 cut(s) 426, 456, 495, 546, 585, 899
BstAFI CTTAAG 1 cut(s) 698
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 1 cut(s) 997
BstDSI CCRYGG 1 cut(s) 621
BstEII GGTNACC 1 cut(s) 933
BstF5I GGATG 2 cut(s) 493, 617
BstKTI GATC 3 cut(s) 241, 310, 517
BstMAI GTCTC 4 cut(s) 11, 15, 372, 587
BstMBI GATC 3 cut(s) 238, 307, 514
BstMWI GCNNNNNNNGC 8 cut(s) 67, 110, 131, 178, 286, 371, 502, 878
BstNSI RCATGY 2 cut(s) 10, 985
BstPI GGTNACC 1 cut(s) 933
BsuI GTATCC 2 cut(s) 37, 1044
BsuRI GGCC 1 cut(s) 533
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 2 cut(s) 493, 617
Cac8I GCNNGC 1 cut(s) 51
CciI TCATGA 3 cut(s) 43, 283, 634
Csp6I GTAC 2 cut(s) 677, 704
CviAII CATG 8 cut(s) 7, 44, 218, 284, 512, 635, 952, 982
CviQI GTAC 2 cut(s) 677, 704
DdeI CTNAG 1 cut(s) 997
DpnI GATC 3 cut(s) 240, 309, 516
DpnII GATC 3 cut(s) 238, 307, 514
Eam1104I CTCTTC 6 cut(s) 426, 456, 495, 546, 585, 899
EarI CTCTTC 6 cut(s) 426, 456, 495, 546, 585, 899
Eco130I CCWWGG 3 cut(s) 62, 543, 645
Eco32I GATATC 1 cut(s) 628
Eco91I GGTNACC 1 cut(s) 933
EcoO65I GGTNACC 1 cut(s) 933
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 3 cut(s) 62, 543, 645
EcoT22I ATGCAT 1 cut(s) 570
ErhI CCWWGG 3 cut(s) 62, 543, 645
FaeI CATG 8 cut(s) 10, 47, 221, 287, 515, 638, 955, 985
FalI AAGNNNNNCTT 2 cut(s) 911, 943
FaqI GGGAC 1 cut(s) 978
FatI CATG 8 cut(s) 6, 43, 217, 283, 511, 634, 951, 981
FbaI TGATCA 1 cut(s) 238
FokI GGATG 2 cut(s) 500, 604
FspBI CTAG 5 cut(s) 63, 89, 183, 290, 885
HaeIII GGCC 1 cut(s) 533
Hin1II CATG 8 cut(s) 10, 47, 221, 287, 515, 638, 955, 985
HindIII AAGCTT 2 cut(s) 51, 695
HinfI GANTC 5 cut(s) 227, 395, 452, 556, 991
HphI GGTGA 4 cut(s) 199, 329, 766, 927
Hpy188I TCNGA 3 cut(s) 31, 391, 457
Hpy188III TCNNGA 9 cut(s) 14, 44, 146, 258, 284, 305, 311, 635, 809
HpyAV CCTTC 3 cut(s) 257, 804, 856
HpyCH4III ACNGT 1 cut(s) 726
HpyCH4IV ACGT 1 cut(s) 662
HpyCH4V TGCA 8 cut(s) 191, 365, 403, 426, 491, 568, 785, 944
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 110, 131, 178, 286, 371, 502, 878
HpyF3I CTNAG 1 cut(s) 997
HpySE526I ACGT 1 cut(s) 662
Hsp92II CATG 8 cut(s) 10, 47, 221, 287, 515, 638, 955, 985
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 238, 307, 514
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 4 cut(s) 247, 776, 886, 927
LweI GCATC 4 cut(s) 289, 352, 478, 849
MaeI CTAG 5 cut(s) 63, 89, 183, 290, 885
MaeII ACGT 1 cut(s) 662
MaeIII GTNAC 4 cut(s) 572, 731, 754, 933
MalI GATC 3 cut(s) 240, 309, 516
MboI GATC 3 cut(s) 238, 307, 514
MfeI CAATTG 2 cut(s) 95, 939
MhlI GDGCHC 2 cut(s) 671, 781
MluCI AATT 7 cut(s) 95, 116, 253, 355, 760, 894, 939
MlyI GAGTC 2 cut(s) 565, 1000
Mph1103I ATGCAT 1 cut(s) 570
MseI TTAA 7 cut(s) 521, 563, 681, 693, 699, 789, 915
MslI CAYNNNNRTG 1 cut(s) 165
MspCI CTTAAG 1 cut(s) 698
MunI CAATTG 2 cut(s) 95, 939
MwoI GCNNNNNNNGC 8 cut(s) 67, 110, 131, 178, 286, 371, 502, 878
NdeII GATC 3 cut(s) 238, 307, 514
NlaIII CATG 8 cut(s) 10, 47, 221, 287, 515, 638, 955, 985
NlaIV GGNNCC 2 cut(s) 249, 882
NmuCI GTSAC 3 cut(s) 731, 754, 933
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 2 cut(s) 10, 985
PagI TCATGA 3 cut(s) 43, 283, 634
PciI ACATGT 1 cut(s) 981
PciSI GCTCTTC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 227, 395, 452
PleI GAGTC 2 cut(s) 564, 999
PpsI GAGTC 2 cut(s) 564, 999
PscI ACATGT 1 cut(s) 981
Psp1406I AACGTT 1 cut(s) 662
PspEI GGTNACC 1 cut(s) 933
PspN4I GGNNCC 2 cut(s) 249, 882
RsaI GTAC 2 cut(s) 678, 705
RsaNI GTAC 2 cut(s) 677, 704
RseI CAYNNNNRTG 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 7 cut(s) 521, 563, 681, 693, 699, 789, 915
Sau3AI GATC 3 cut(s) 238, 307, 514
SchI GAGTC 2 cut(s) 565, 1000
SduI GDGCHC 2 cut(s) 671, 781
SfaNI GCATC 4 cut(s) 289, 352, 478, 849
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 7 cut(s) 12, 144, 176, 527, 698, 807, 1025
SmoI CTYRAG 7 cut(s) 12, 144, 176, 527, 698, 807, 1025
Sse9I AATT 7 cut(s) 95, 116, 253, 355, 760, 894, 939
SspI AATATT 3 cut(s) 407, 538, 948
SspMI CTAG 5 cut(s) 63, 89, 183, 290, 885
StyI CCWWGG 3 cut(s) 62, 543, 645
TaaI ACNGT 1 cut(s) 726
TaiI ACGT 1 cut(s) 665
TasI AATT 7 cut(s) 95, 116, 253, 355, 760, 894, 939
TatI WGTACW 1 cut(s) 676
TfiI GAWTC 3 cut(s) 227, 395, 452
Tru1I TTAA 7 cut(s) 521, 563, 681, 693, 699, 789, 915
Tru9I TTAA 7 cut(s) 521, 563, 681, 693, 699, 789, 915
TseFI GTSAC 3 cut(s) 731, 754, 933
Tsp45I GTSAC 3 cut(s) 731, 754, 933
TspDTI ATGAA 3 cut(s) 314, 444, 940
TspGWI ACGGA 1 cut(s) 638
Vha464I CTTAAG 1 cut(s) 698
XapI RAATTY 1 cut(s) 355
XceI RCATGY 2 cut(s) 10, 985
XmaJI CCTAGG 1 cut(s) 62
XspI CTAG 5 cut(s) 63, 89, 183, 290, 885
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.