Rroxscaffold_7G00176630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000195
Physical Location & Seq
Forward (+)
16233406 .. 16234383
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176630.1

Sequence Viewer

Length: 978 bp
ATGGAGCAAGTCAAGGCTAGCCTACTTCAAGAGAAACCTCCCACCACTTTATATTTGCAAGAGCCTTTCTTTGATCAAGTGGAGCCTATTTCAAGAGAAGTTGTACATATCAAGTATCTTGAGCAAGAGTCGTCCATGCAAGTTGAAGATGATTATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTTCAATGCAAGTGAGGTGAGAGACTACACTTCGGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCCAAATGGAGGGGAGATATTTGAAGATGATTCCGATGAAGAGGATGTCCTTTCTAGTGAGGAGGATGCGGAGTTTGAAGTGATGCACCACAATCCTTTATTCATTGAGGCCGTACTTGAACATGATTCTAATGAGGAGGATGACTTATCTAGTGGGGAGGATGTGGAGTTTGAAATCATACATCATAATCCCTTATTCATTGAGGTTGTTATTCTCATGGAGGAATATCGTCCTTCAATACTTTGTGATGGTGAAGAAATTGAAGAGCTCAGCACTTTCTCTCCTCCCACATCCAAAGAGATCCATCATGAGTTTCCCAAGGTGGAGAGTAGAACATTGAACACTTATGTTCTTAGTGGGAAGATTGAGATTAAGGTATTTTTACCTCTCAATCTACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAAAGAAGCACTTGCACTCACCCTTTCCCGTCAATCTCAAGAGCTTCTACCACCTATTGTTCTTATGAGCATCATTTCTACACCACTTTTAAAGGAGAAGGCAAGGTTGGCTCCTATAAGAACAATTATGAAGAGGAAGATTAAGAAGCTTCATTTTTGGGAACCAATTGGAACATTCATGGACAGCTCTTGGTCTTGCCTCTATGACACATCAAGGAGTCCCTTAGCCCCAAACAATAGGGTGGTTGCACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

37.59

Weight (kDa)

4.46

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 668
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 559
AfaI GTAC 3 cut(s) 105, 171, 378
AfiI CCNNNNNNNGG 2 cut(s) 272, 668
AjuI GAANNNNNNNTTGG 4 cut(s) 168, 200, 797, 829
AluBI AGCT 6 cut(s) 184, 262, 532, 751, 856, 894
AluI AGCT 6 cut(s) 184, 262, 532, 751, 856, 894
Alw21I GWGCWC 1 cut(s) 534
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 1 cut(s) 559
AoxI GGCC 1 cut(s) 372
AsuHPI GGTGA 4 cut(s) 226, 527, 703, 718
AsuNHI GCTAGC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 534
Bbv12I GWGCWC 1 cut(s) 534
BccI CCATC 3 cut(s) 506, 576, 688
BceAI ACGGC 1 cut(s) 359
BciVI GTATCC 1 cut(s) 978
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 3 cut(s) 18, 318, 414
BfuI GTATCC 1 cut(s) 978
BlpI GCTNAGC 1 cut(s) 533
BmiI GGNNCC 3 cut(s) 84, 819, 870
BmsI GCATC 3 cut(s) 319, 336, 786
BmtI GCTAGC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 931
Bpu1102I GCTNAGC 1 cut(s) 533
BpuEI CTTGAG 2 cut(s) 140, 729
BsaJI CCNNGG 1 cut(s) 582
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 668
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 5 cut(s) 313, 334, 409, 430, 554
BseLI CCNNNNNNNGG 2 cut(s) 272, 668
BseMII CTCAG 1 cut(s) 547
BseRI GAGGAG 3 cut(s) 338, 413, 537
BshFI GGCC 1 cut(s) 374
BsiHKAI GWGCWC 1 cut(s) 534
BslFI GGGAC 1 cut(s) 912
BslI CCNNNNNNNGG 2 cut(s) 272, 668
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 912
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 534
Bsp1407I TGTACA 2 cut(s) 103, 169
Bsp143I GATC 2 cut(s) 73, 564
Bsp1720I GCTNAGC 1 cut(s) 533
BspACI CCGC 1 cut(s) 332
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 546
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 3 cut(s) 84, 819, 870
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 1 cut(s) 559
BspQI GCTCTTC 1 cut(s) 522
BsrGI TGTACA 2 cut(s) 103, 169
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 2 cut(s) 73, 564
BssT1I CCWWGG 1 cut(s) 582
Bst6I CTCTTC 3 cut(s) 297, 522, 833
BstAUI TGTACA 2 cut(s) 103, 169
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 4 cut(s) 258, 533, 617, 931
BstF5I GGATG 5 cut(s) 313, 334, 409, 430, 554
BstKTI GATC 2 cut(s) 76, 567
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 73, 564
BstMWI GCNNNNNNNGC 1 cut(s) 815
BstX2I RGATCY 1 cut(s) 564
BstYI RGATCY 1 cut(s) 564
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 1 cut(s) 374
BtsCI GGATG 5 cut(s) 313, 334, 409, 430, 554
Cac8I GCNNGC 1 cut(s) 19
CciI TCATGA 1 cut(s) 571
Csp6I GTAC 3 cut(s) 104, 170, 377
CviAII CATG 5 cut(s) 136, 386, 481, 572, 886
CviQI GTAC 3 cut(s) 104, 170, 377
DdeI CTNAG 4 cut(s) 258, 533, 617, 931
DpnI GATC 2 cut(s) 75, 566
DpnII GATC 2 cut(s) 73, 564
DraI TTTAAA 1 cut(s) 798
Eam1104I CTCTTC 3 cut(s) 297, 522, 833
EarI CTCTTC 3 cut(s) 297, 522, 833
Ecl136II GAGCTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 534
Eco53kI GAGCTC 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 534
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 5 cut(s) 139, 389, 484, 575, 889
FalI AAGNNNNNCTT 2 cut(s) 702, 734
FaqI GGGAC 1 cut(s) 912
FatI CATG 5 cut(s) 135, 385, 480, 571, 885
FbaI TGATCA 1 cut(s) 73
FokI GGATG 5 cut(s) 320, 341, 416, 437, 541
FriOI GRGCYC 1 cut(s) 534
FspBI CTAG 3 cut(s) 18, 318, 414
HaeIII GGCC 1 cut(s) 374
Hin1II CATG 5 cut(s) 139, 389, 484, 575, 889
HindIII AAGCTT 2 cut(s) 260, 854
HinfI GANTC 4 cut(s) 128, 293, 389, 925
HphI GGTGA 4 cut(s) 226, 527, 703, 718
Hpy188I TCNGA 2 cut(s) 232, 298
Hpy188III TCNNGA 5 cut(s) 29, 93, 119, 572, 746
HpyAV CCTTC 2 cut(s) 507, 799
HpyCH4V TGCA 7 cut(s) 58, 139, 206, 244, 349, 722, 956
HpyF10VI GCNNNNNNNGC 1 cut(s) 815
HpyF3I CTNAG 4 cut(s) 258, 533, 617, 931
Hsp92II CATG 5 cut(s) 139, 389, 484, 575, 889
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 2 cut(s) 73, 564
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 3 cut(s) 4, 82, 823
LweI GCATC 3 cut(s) 319, 336, 786
MaeI CTAG 3 cut(s) 18, 318, 414
MalI GATC 2 cut(s) 75, 566
MboI GATC 2 cut(s) 73, 564
MboII GAAGA 8 cut(s) 158, 299, 314, 530, 539, 637, 850, 856
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 1 cut(s) 564
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 3 cut(s) 522, 831, 873
MlyI GAGTC 2 cut(s) 137, 934
MseI TTAA 4 cut(s) 636, 665, 797, 849
MunI CAATTG 1 cut(s) 873
MwoI GCNNNNNNNGC 1 cut(s) 815
NdeII GATC 2 cut(s) 73, 564
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 5 cut(s) 139, 389, 484, 575, 889
NlaIV GGNNCC 3 cut(s) 84, 819, 870
PagI TCATGA 1 cut(s) 571
PciSI GCTCTTC 1 cut(s) 522
PfeI GAWTC 2 cut(s) 293, 389
PflMI CCANNNNNTGG 1 cut(s) 668
PleI GAGTC 2 cut(s) 136, 933
PpsI GAGTC 2 cut(s) 136, 933
Psp124BI GAGCTC 1 cut(s) 534
PspN4I GGNNCC 3 cut(s) 84, 819, 870
PsuI RGATCY 1 cut(s) 564
RsaI GTAC 3 cut(s) 105, 171, 378
RsaNI GTAC 3 cut(s) 104, 170, 377
SacI GAGCTC 1 cut(s) 534
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 4 cut(s) 636, 665, 797, 849
Sau3AI GATC 2 cut(s) 73, 564
SchI GAGTC 2 cut(s) 137, 934
SduI GDGCHC 1 cut(s) 534
SfaNI GCATC 3 cut(s) 319, 336, 786
SmlI CTYRAG 3 cut(s) 119, 744, 959
SmoI CTYRAG 3 cut(s) 119, 744, 959
Sse9I AATT 3 cut(s) 522, 831, 873
SsiI CCGC 1 cut(s) 332
SspI AATATT 1 cut(s) 248
SspMI CTAG 3 cut(s) 18, 318, 414
SstI GAGCTC 1 cut(s) 534
StyI CCWWGG 1 cut(s) 582
TasI AATT 3 cut(s) 522, 831, 873
TatI WGTACW 2 cut(s) 103, 169
TfiI GAWTC 2 cut(s) 293, 389
Tru1I TTAA 4 cut(s) 636, 665, 797, 849
Tru9I TTAA 4 cut(s) 636, 665, 797, 849
TspDTI ATGAA 7 cut(s) 207, 315, 355, 451, 848, 851, 874
Van91I CCANNNNNTGG 1 cut(s) 668
XspI CTAG 3 cut(s) 18, 318, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.