Rmu_ssc0000482.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000482.1
OG0000195
Physical Location & Seq
Forward (+)
77359 .. 81120
3762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000482.1_g000020.1.cds

Sequence Viewer

Length: 1071 bp
atggatcgatggagctatggatgggatcaacctaggggatatgagcaacaaagttataatgatgaaggttttcaagaatggaatacatatgccgagagtcctatgccttgttacaaccaaacttgtgccttgtgtaattctccgtggcactcaccttttgaatgctctttgagatttgagtatccggattttatgcgagagtatgagtacaaaatggggatgtatcaagagacatttggactcgaagcatatcctcatgagcaagcttttgagcctaggaagccatcacttgaagaacaatttgctcaattggaagcctctaatgctcaattgcaagcctcccaagctcaatgtctagcctcccaagcccaattgcatgctaaattgcaagccttcaatgctcaattcctaattcaagagaagcagttttatgagcatcatgagctagagttgcctattcaagatcgagagggtgatgttcatatacaagaaagtgtgcttgattgtggaaattttgatgcaagtggggtgagagactacatttcagaggaatcggtgcaatattggacttctaattttcacaatgaaaatgaggtatatgaagttgattccgaagatgagaatagcttgtttagtgaggaggaggcagagtttgaagacttacaccataatcctttaatcgttgaggccgatattcccaaggaggaagagagtcctttaacaccttgtgataatgaagaaattgaagagccattgactctctctcctcccacatccacggagatccatcatgagcttcacaaggtggagagtagaacgttgagcacttttgtacttaatgagaatattgagcttaaggtaccttgctggaaagataagccggtattggtatcggtttatgtggagaggccaaagagaaggccagcttcgtcaactcatcatcaccaccaccaccaccatcaccaccatcatcatattcatcacaccatcaagcgagaggttatttctcatagggatggtgctggtggcaaaggctatactactagtaggagagctgagctccttcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

41.77

Weight (kDa)

4.99

Isoelectric Point (pI)

63.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
Acc65I GGTACC 1 cut(s) 859
AccB1I GGYRCC 1 cut(s) 859
AccIII TCCGGA 1 cut(s) 184
AclI AACGTT 1 cut(s) 818
AclWI GGATC 3 cut(s) 12, 33, 778
AcsI RAATTY 1 cut(s) 511
AcuI CTGAAG 1 cut(s) 1049
AdeI CACNNNGTG 2 cut(s) 728, 805
AfaI GTAC 3 cut(s) 209, 834, 861
AflII CTTAAG 1 cut(s) 854
AgsI TTSAA 8 cut(s) 74, 161, 293, 397, 416, 461, 656, 746
AhlI ACTAGT 1 cut(s) 1043
Alw21I GWGCWC 2 cut(s) 827, 1062
Alw26I GTCTC 2 cut(s) 224, 528
AlwI GGATC 3 cut(s) 12, 33, 778
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 3 cut(s) 687, 908, 920
ApoI RAATTY 1 cut(s) 511
Asp700I GAANNNNTTC 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 859
AspA2I CCTAGG 2 cut(s) 32, 275
AsuHPI GGTGA 5 cut(s) 144, 485, 541, 935, 953
AvrII CCTAGG 2 cut(s) 32, 275
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 1 cut(s) 1062
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 827, 1062
BccI CCATC 8 cut(s) 3, 15, 292, 795, 966, 975, 995, 1010
BciVI GTATCC 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 224, 528
BcuI ACTAGT 1 cut(s) 1043
BfaI CTAG 5 cut(s) 33, 276, 356, 446, 1044
BfrI CTTAAG 1 cut(s) 854
BfuI GTATCC 1 cut(s) 192
BlnI CCTAGG 2 cut(s) 32, 275
BlpI GCTNAGC 1 cut(s) 1056
BmiI GGNNCC 1 cut(s) 861
BmsI GCATC 2 cut(s) 445, 508
BpiI GAAGAC 1 cut(s) 663
BplI GAGNNNNNCTC 1 cut(s) 1044
Bpu1102I GCTNAGC 1 cut(s) 1056
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 5 cut(s) 32, 143, 275, 699, 777
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 4 cut(s) 635, 665, 748, 778
Bse118I RCCGGY 1 cut(s) 880
BseAI TCCGGA 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 5 cut(s) 32, 143, 275, 699, 777
BseGI GGATG 4 cut(s) 26, 225, 773, 1021
BseMII CTCAG 1 cut(s) 1047
BseRI GAGGAG 3 cut(s) 653, 656, 756
BshFI GGCC 3 cut(s) 689, 910, 922
BshNI GGYRCC 1 cut(s) 859
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 827, 1062
BsiSI CCGG 2 cut(s) 185, 881
BsmAI GTCTC 2 cut(s) 224, 528
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 3 cut(s) 689, 910, 922
Bsp1286I GDGCHC 2 cut(s) 827, 1062
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 4 cut(s) 4, 25, 463, 783
Bsp1720I GCTNAGC 1 cut(s) 1056
BspANI GGCC 3 cut(s) 689, 910, 922
BspCNI CTCAG 1 cut(s) 1048
BspDI ATCGAT 1 cut(s) 7
BspEI TCCGGA 1 cut(s) 184
BspHI TCATGA 3 cut(s) 256, 439, 790
BspLI GGNNCC 1 cut(s) 861
BspPI GGATC 3 cut(s) 12, 33, 778
BspQI GCTCTTC 1 cut(s) 741
BspT107I GGYRCC 1 cut(s) 859
BspTI CTTAAG 1 cut(s) 854
BsrFI RCCGGY 1 cut(s) 880
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 5 cut(s) 32, 143, 275, 699, 777
BssMI GATC 4 cut(s) 4, 25, 463, 783
BssT1I CCWWGG 3 cut(s) 32, 275, 699
Bst6I CTCTTC 2 cut(s) 702, 741
BstAFI CTTAAG 1 cut(s) 854
BstC8I GCNNGC 5 cut(s) 264, 336, 378, 390, 924
BstDEI CTNAG 1 cut(s) 1056
BstDSI CCRYGG 2 cut(s) 143, 777
BstF5I GGATG 4 cut(s) 26, 225, 773, 1021
BstKTI GATC 4 cut(s) 7, 28, 466, 786
BstMAI GTCTC 2 cut(s) 224, 528
BstMBI GATC 4 cut(s) 4, 25, 463, 783
BstMWI GCNNNNNNNGC 7 cut(s) 280, 323, 344, 365, 398, 442, 451
BstNSI RCATGY 1 cut(s) 380
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
Bsu15I ATCGAT 1 cut(s) 7
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 3 cut(s) 689, 910, 922
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 2 cut(s) 143, 777
BtsCI GGATG 4 cut(s) 26, 225, 773, 1021
Cac8I GCNNGC 5 cut(s) 264, 336, 378, 390, 924
CciI TCATGA 3 cut(s) 256, 439, 790
Cfr10I RCCGGY 1 cut(s) 880
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 3 cut(s) 208, 833, 860
CviAII CATG 4 cut(s) 257, 377, 440, 791
CviQI GTAC 3 cut(s) 208, 833, 860
DdeI CTNAG 1 cut(s) 1056
DpnI GATC 4 cut(s) 6, 27, 465, 785
DpnII GATC 4 cut(s) 4, 25, 463, 783
DraIII CACNNNGTG 2 cut(s) 728, 805
Eam1104I CTCTTC 2 cut(s) 702, 741
EarI CTCTTC 2 cut(s) 702, 741
Ecl136II GAGCTC 1 cut(s) 1060
Eco130I CCWWGG 3 cut(s) 32, 275, 699
Eco24I GRGCYC 1 cut(s) 1062
Eco53kI GAGCTC 1 cut(s) 1060
Eco57I CTGAAG 1 cut(s) 1049
EcoICRI GAGCTC 1 cut(s) 1060
EcoT14I CCWWGG 3 cut(s) 32, 275, 699
EcoT38I GRGCYC 1 cut(s) 1062
ErhI CCWWGG 3 cut(s) 32, 275, 699
FaeI CATG 4 cut(s) 260, 380, 443, 794
FalI AAGNNNNNCTT 2 cut(s) 910, 942
FatI CATG 4 cut(s) 256, 376, 439, 790
FauNDI CATATG 1 cut(s) 88
FokI GGATG 4 cut(s) 33, 232, 760, 1028
FriOI GRGCYC 1 cut(s) 1062
FspBI CTAG 5 cut(s) 33, 276, 356, 446, 1044
HaeIII GGCC 3 cut(s) 689, 910, 922
HapII CCGG 2 cut(s) 185, 881
Hin1II CATG 4 cut(s) 260, 380, 443, 794
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 6 cut(s) 97, 240, 551, 608, 712, 757
HpaII CCGG 2 cut(s) 185, 881
HphI GGTGA 5 cut(s) 144, 485, 541, 935, 953
Hpy166II GTNNAC 1 cut(s) 933
Hpy188I TCNGA 2 cut(s) 547, 613
Hpy188III TCNNGA 9 cut(s) 74, 185, 227, 257, 416, 440, 461, 467, 791
Hpy8I GTNNAC 1 cut(s) 933
HpyAV CCTTC 3 cut(s) 59, 403, 912
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 5 cut(s) 334, 376, 388, 521, 559
HpyF10VI GCNNNNNNNGC 7 cut(s) 280, 323, 344, 365, 398, 442, 451
HpyF3I CTNAG 1 cut(s) 1056
HpySE526I ACGT 1 cut(s) 818
Hsp92II CATG 4 cut(s) 260, 380, 443, 794
Kpn2I TCCGGA 1 cut(s) 184
KpnI GGTACC 1 cut(s) 863
Kzo9I GATC 4 cut(s) 4, 25, 463, 783
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 2 cut(s) 12, 1065
LpnPI CCDG 5 cut(s) 198, 853, 894, 936, 1008
LweI GCATC 2 cut(s) 445, 508
MaeI CTAG 5 cut(s) 33, 276, 356, 446, 1044
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 1 cut(s) 110
MalI GATC 4 cut(s) 6, 27, 465, 785
MboI GATC 4 cut(s) 4, 25, 463, 783
MboII GAAGA 6 cut(s) 305, 626, 668, 719, 749, 758
MfeI CAATTG 3 cut(s) 308, 329, 371
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 2 cut(s) 827, 1062
MlyI GAGTC 4 cut(s) 106, 234, 721, 751
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 4 cut(s) 677, 719, 837, 855
MslI CAYNNNNRTG 1 cut(s) 1014
MspCI CTTAAG 1 cut(s) 854
MspI CCGG 2 cut(s) 185, 881
MunI CAATTG 3 cut(s) 308, 329, 371
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 7 cut(s) 280, 323, 344, 365, 398, 442, 451
NdeI CATATG 1 cut(s) 88
NdeII GATC 4 cut(s) 4, 25, 463, 783
NlaIII CATG 4 cut(s) 260, 380, 443, 794
NlaIV GGNNCC 1 cut(s) 861
NmeAIII GCCGAG 1 cut(s) 118
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PagI TCATGA 3 cut(s) 256, 439, 790
PciSI GCTCTTC 1 cut(s) 741
PcsI WCGNNNNNNNCGW 1 cut(s) 687
PctI GAATGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 2 cut(s) 551, 608
PleI GAGTC 4 cut(s) 105, 234, 720, 751
PpsI GAGTC 4 cut(s) 105, 234, 720, 751
PsiI TTATAA 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 1062
Psp1406I AACGTT 1 cut(s) 818
PspN4I GGNNCC 1 cut(s) 861
PsuI RGATCY 1 cut(s) 783
RsaI GTAC 3 cut(s) 209, 834, 861
RsaNI GTAC 3 cut(s) 208, 833, 860
RseI CAYNNNNRTG 1 cut(s) 1014
SacI GAGCTC 1 cut(s) 1062
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 4 cut(s) 677, 719, 837, 855
Sau3AI GATC 4 cut(s) 4, 25, 463, 783
SchI GAGTC 4 cut(s) 106, 234, 721, 751
SduI GDGCHC 2 cut(s) 827, 1062
SfaNI GCATC 2 cut(s) 445, 508
SmiMI CAYNNNNRTG 1 cut(s) 1014
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
SpeI ACTAGT 1 cut(s) 1043
SphI GCATGC 1 cut(s) 380
SspI AATATT 2 cut(s) 563, 847
SspMI CTAG 5 cut(s) 33, 276, 356, 446, 1044
SstI GAGCTC 1 cut(s) 1062
StyI CCWWGG 3 cut(s) 32, 275, 699
TaiI ACGT 1 cut(s) 821
TaqI TCGA 3 cut(s) 7, 243, 466
TatI WGTACW 2 cut(s) 207, 832
TfiI GAWTC 2 cut(s) 551, 608
Tru1I TTAA 4 cut(s) 677, 719, 837, 855
Tru9I TTAA 4 cut(s) 677, 719, 837, 855
TspDTI ATGAA 6 cut(s) 78, 470, 600, 615, 750, 968
TspGWI ACGGA 2 cut(s) 132, 794
Vha464I CTTAAG 1 cut(s) 854
XapI RAATTY 1 cut(s) 511
XceI RCATGY 1 cut(s) 380
XmaJI CCTAGG 2 cut(s) 32, 275
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 5 cut(s) 33, 276, 356, 446, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.