Rroxscaffold_1G00002400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000195
Physical Location & Seq
Forward (+)
2879007 .. 2883987
4981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002400.1

Sequence Viewer

Length: 495 bp
ATGTTTTTTCTTGCATTGCTTTTGCAGCAAACGTTTGCGGATCCGAAAAGCAAAGGTTGTCAATTTCTGGGTATGGATTGGTTGCCAAGACCATTTGCTATTCTCTGTATTGTTAATGGCTCCCAAAAACCAATGTTTCCTCAACATTCCTGGCCGGTTGCTGCTGGGTGTATTGATGATCATATTAATGTTTCGGAACACTTAAGGTGGATTGCTGATGGTCCTAATTCAGAAGTACCAACATTCGGTGCTTACAAGATAAATGAGGTTAATTTCAACACCAAGGATCGTGATGATGTTCGAGCAGTTCAATGCGGTGGTGTTTCATTGTTCGCCAATGCAATGCTAATCTCTAGTGCGAAGGATAAAAACCCGGTTAATGATGATACGACTTTTTATGGAGTCGTTAAAGATATATGGGAGTTAGACTATCATAGCTTTAGGGTTTCGTATTCTACCGTGATTGGGTTGACATTGATAAGAGCATTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

164

Amino Acids

18.39

Weight (kDa)

6.04

Isoelectric Point (pI)

30.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 38, 315
AclI AACGTT 1 cut(s) 32
AclWI GGATC 3 cut(s) 35, 48, 294
AcoI YGGCCR 1 cut(s) 152
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 245, 465
AflII CTTAAG 1 cut(s) 202
AgsI TTSAA 2 cut(s) 277, 311
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 1 cut(s) 438
AluI AGCT 1 cut(s) 438
AlwI GGATC 3 cut(s) 35, 48, 294
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 25, 161
AseI ATTAAT 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 374
AvaII GGWCC 1 cut(s) 221
BamHI GGATCC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 37, 148
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 151
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 374
BfaI CTAG 1 cut(s) 354
BfrI CTTAAG 1 cut(s) 202
BisI GCNGC 2 cut(s) 26, 162
BlsI GCNGC 2 cut(s) 27, 163
Bme1390I CCNGG 2 cut(s) 151, 374
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 42, 121
BmrFI CCNGG 2 cut(s) 151, 374
BpuMI CCSGG 1 cut(s) 374
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 465
Bse118I RCCGGY 1 cut(s) 154
Bse3DI GCAATG 2 cut(s) 14, 348
BseBI CCWGG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 245, 465
BseMI GCAATG 2 cut(s) 14, 348
BseXI GCAGC 2 cut(s) 37, 148
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 155, 374
BslI CCNNNNNNNGG 2 cut(s) 245, 465
BsnI GGCC 1 cut(s) 154
Bsp143I GATC 3 cut(s) 40, 178, 286
BspACI CCGC 2 cut(s) 38, 315
BspANI GGCC 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 42, 121
BspPI GGATC 3 cut(s) 35, 48, 294
BspTI CTTAAG 1 cut(s) 202
BsrDI GCAATG 2 cut(s) 14, 348
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 40, 178, 286
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 460
BstAFI CTTAAG 1 cut(s) 202
BstKTI GATC 3 cut(s) 43, 181, 289
BstMBI GATC 3 cut(s) 40, 178, 286
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 149, 372
BstV1I GCAGC 2 cut(s) 37, 148
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 221
Csp6I GTAC 1 cut(s) 236
CviJI RGCY 3 cut(s) 120, 154, 438
CviKI_1 RGCY 3 cut(s) 120, 154, 438
CviQI GTAC 1 cut(s) 236
DpnI GATC 3 cut(s) 42, 180, 288
DpnII GATC 3 cut(s) 40, 178, 286
EaeI YGGCCR 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaiI YATR 6 cut(s) 74, 183, 399, 416, 418, 435
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 26, 162
Fsp4HI GCNGC 2 cut(s) 26, 162
FspBI CTAG 1 cut(s) 354
GluI GCNGC 2 cut(s) 26, 162
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 154
HapII CCGG 2 cut(s) 155, 374
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 1 cut(s) 402
HpaII CCGG 2 cut(s) 155, 374
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 3 cut(s) 45, 196, 232
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 471
HpyAV CCTTC 1 cut(s) 355
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 14, 25, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 3 cut(s) 40, 178, 286
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 6 cut(s) 53, 136, 150, 163, 168, 387
Lsp1109I GCAGC 2 cut(s) 37, 148
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 32
MalI GATC 3 cut(s) 42, 180, 288
MboI GATC 3 cut(s) 40, 178, 286
MflI RGATCY 1 cut(s) 40
MluCI AATT 3 cut(s) 62, 226, 271
MlyI GAGTC 1 cut(s) 411
MnlI CCTC 2 cut(s) 150, 259
MseI TTAA 7 cut(s) 114, 186, 203, 270, 378, 408, 488
MslI CAYNNNNRTG 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 2 cut(s) 155, 374
MspR9I CCNGG 2 cut(s) 151, 374
MvaI CCWGG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 374
NdeII GATC 3 cut(s) 40, 178, 286
NlaIV GGNNCC 2 cut(s) 42, 121
PkrI GCNGC 2 cut(s) 27, 163
PleI GAGTC 1 cut(s) 410
PpsI GAGTC 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 149
PspN4I GGNNCC 2 cut(s) 42, 121
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 7 cut(s) 114, 186, 203, 270, 378, 408, 488
SatI GCNGC 2 cut(s) 26, 162
Sau3AI GATC 3 cut(s) 40, 178, 286
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 2 cut(s) 151, 374
SetI ASST 5 cut(s) 35, 58, 209, 270, 440
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 3 cut(s) 62, 226, 271
SsiI CCGC 2 cut(s) 38, 315
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 2 cut(s) 149, 372
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 460
TaiI ACGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 301
TasI AATT 3 cut(s) 62, 226, 271
Tru1I TTAA 7 cut(s) 114, 186, 203, 270, 378, 408, 488
Tru9I TTAA 7 cut(s) 114, 186, 203, 270, 378, 408, 488
TseI GCWGC 2 cut(s) 25, 161
TspDTI ATGAA 1 cut(s) 315
Vha464I CTTAAG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 221
VspI ATTAAT 1 cut(s) 186
XspI CTAG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.