Rmu_sc0009431.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009431.1
OG0000195
Physical Location & Seq
Reverse (-)
39721 .. 44246
4526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009431.1_g000008.1.cds

Sequence Viewer

Length: 1050 bp
atggatgggatgactcgtggggatatgagcaagaaaacttctacggtagaggtcatcaagagtggaattcttatgcgatttgagtgcccggattttatgcaagagtgtgagtacaagatgagcgtgtatcaagagatatttgtacccgacgcatatccacaagatgaagcttatgagcctcggaaggaattcattgaaggactaatagctcaattgcaagcctcccaagatctattacaagcctctcaagctagaatttcacaagataccatggtttccgaagcatattctcatgagcaagtgtatgagtctaggaggccttctcttgaagaattgctagctcaattgcaaacatcccaagctcgattgcaagcttctcaagaaatgcttatacattccaatgagcaacttgaagcaagttttgcacaagagccacccttcaccatttatgagcatgaatatttctttgatcaagtggagtctatttcaagaaaagaagtgtatgtcgagcatcttgagcaagaatcctttatgcaagttgaaaatgatgatagtgatgttgatgtacaagaaattgagcatgattatgaaagtttcaatgcaaatgattccgaagaagaggatgtcttgtctagtgaggaggatgcggagcttgaagttatacatcaaaataccttgttcatcgaggaggatgtggagcttcaagtcatataccataatcccttattcattgaggtcgatattcccatggaggaaaagagtccttcaatactttgtgatgatgaagaaattgaagagccaaggactttattgcctcatacatccatggagatccatcatgagcttcccaaggtggagagtagaacattgagcacttatgttcttaatgagaggattgggatcaagcccacgctagccttatttgcacgcctgctctgcgctcgccccgcactatacgcccttgcatttgttgctgctagccctctgctagcaatctctcggccagcctcggacaactcctgccacagaccggccagtagcctcggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

40.03

Weight (kDa)

4.32

Isoelectric Point (pI)

69.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 647, 948
AclWI GGATC 2 cut(s) 826, 908
AcoI YGGCCR 2 cut(s) 1001, 1032
AcsI RAATTY 3 cut(s) 66, 188, 255
AfaI GTAC 3 cut(s) 113, 144, 567
AfiI CCNNNNNNNGG 1 cut(s) 1030
AluBI AGCT 9 cut(s) 170, 209, 251, 341, 362, 374, 652, 700, 844
AluI AGCT 9 cut(s) 170, 209, 251, 341, 362, 374, 652, 700, 844
Alw21I GWGCWC 1 cut(s) 875
AlwI GGATC 2 cut(s) 826, 908
AoxI GGCC 3 cut(s) 317, 1001, 1032
ApeKI GCWGC 1 cut(s) 974
ApoI RAATTY 3 cut(s) 66, 188, 255
Asp700I GAANNNNTTC 1 cut(s) 188
AspLEI GCGC 1 cut(s) 941
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 433
AsuNHI GCTAGC 4 cut(s) 337, 913, 977, 988
BaeGI GKGCMC 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BauI CACGAG 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 875
BbvI GCAGC 1 cut(s) 961
BccI CCATC 1 cut(s) 843
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 8 cut(s) 252, 312, 338, 633, 914, 978, 989, 1048
BglII AGATCT 1 cut(s) 229
BisI GCNGC 1 cut(s) 975
BlsI GCNGC 1 cut(s) 976
Bme1390I CCNGG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 520, 634
BmtI GCTAGC 4 cut(s) 341, 917, 981, 992
BplI GAGNNNNNCTC 2 cut(s) 307, 339
BpuEI CTTGAG 3 cut(s) 231, 363, 536
BpuMI CCSGG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 899
BsaJI CCNNGG 8 cut(s) 179, 270, 747, 800, 825, 849, 1008, 1042
Bsc4I CCNNNNNNNGG 1 cut(s) 1030
Bse118I RCCGGY 1 cut(s) 1030
Bse1I ACTGG 1 cut(s) 1035
Bse8I GATNNNNATC 1 cut(s) 899
BseDI CCNNGG 8 cut(s) 179, 270, 747, 800, 825, 849, 1008, 1042
BseGI GGATG 7 cut(s) 10, 15, 353, 628, 649, 697, 821
BseJI GATNNNNATC 1 cut(s) 899
BseLI CCNNNNNNNGG 1 cut(s) 1030
BseNI ACTGG 1 cut(s) 1035
BseRI GAGGAG 2 cut(s) 653, 701
BseSI GKGCMC 1 cut(s) 89
BseXI GCAGC 1 cut(s) 961
BshFI GGCC 3 cut(s) 319, 1003, 1034
BsiHKAI GWGCWC 1 cut(s) 875
BsiSI CCGG 2 cut(s) 89, 1031
BslI CCNNNNNNNGG 1 cut(s) 1030
BsnI GGCC 3 cut(s) 319, 1003, 1034
Bsp1286I GDGCHC 2 cut(s) 89, 875
Bsp1407I TGTACA 1 cut(s) 565
Bsp143I GATC 4 cut(s) 229, 469, 831, 900
Bsp19I CCATGG 3 cut(s) 270, 747, 825
BspACI CCGC 2 cut(s) 647, 948
BspANI GGCC 3 cut(s) 319, 1003, 1034
BspHI TCATGA 2 cut(s) 292, 838
BspOI GCTAGC 4 cut(s) 341, 917, 981, 992
BspPI GGATC 2 cut(s) 826, 908
BspQI GCTCTTC 1 cut(s) 789
BsrFI RCCGGY 1 cut(s) 1030
BsrGI TGTACA 1 cut(s) 565
BsrI ACTGG 1 cut(s) 1035
BssAI RCCGGY 1 cut(s) 1030
BssECI CCNNGG 8 cut(s) 179, 270, 747, 800, 825, 849, 1008, 1042
BssMI GATC 4 cut(s) 229, 469, 831, 900
BssSI CACGAG 1 cut(s) 15
BssT1I CCWWGG 5 cut(s) 270, 747, 800, 825, 849
Bst2BI CACGAG 1 cut(s) 15
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 612, 789
BstAPI GCANNNNNTGC 2 cut(s) 422, 971
BstAUI TGTACA 1 cut(s) 565
BstDSI CCRYGG 3 cut(s) 270, 747, 825
BstF5I GGATG 7 cut(s) 10, 15, 353, 628, 649, 697, 821
BstHHI GCGC 1 cut(s) 941
BstKTI GATC 4 cut(s) 232, 472, 834, 903
BstMBI GATC 4 cut(s) 229, 469, 831, 900
BstMWI GCNNNNNNNGC 8 cut(s) 248, 422, 517, 923, 936, 947, 956, 971
BstSCI CCNGG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 961
BstX2I RGATCY 2 cut(s) 229, 831
BstYI RGATCY 2 cut(s) 229, 831
BsuRI GGCC 3 cut(s) 319, 1003, 1034
BtgI CCRYGG 3 cut(s) 270, 747, 825
BtsCI GGATG 7 cut(s) 10, 15, 353, 628, 649, 697, 821
CciI TCATGA 2 cut(s) 292, 838
CfoI GCGC 1 cut(s) 941
Cfr10I RCCGGY 1 cut(s) 1030
CseI GACGC 1 cut(s) 158
Csp6I GTAC 3 cut(s) 112, 143, 566
CviAII CATG 7 cut(s) 271, 293, 455, 581, 748, 826, 839
CviQI GTAC 3 cut(s) 112, 143, 566
DpnI GATC 4 cut(s) 231, 471, 833, 902
DpnII GATC 4 cut(s) 229, 469, 831, 900
EaeI YGGCCR 2 cut(s) 1001, 1032
Eam1104I CTCTTC 2 cut(s) 612, 789
EarI CTCTTC 2 cut(s) 612, 789
Eco130I CCWWGG 5 cut(s) 270, 747, 800, 825, 849
Eco147I AGGCCT 1 cut(s) 319
EcoRI GAATTC 2 cut(s) 66, 188
EcoT14I CCWWGG 5 cut(s) 270, 747, 800, 825, 849
ErhI CCWWGG 5 cut(s) 270, 747, 800, 825, 849
FaeI CATG 7 cut(s) 274, 296, 458, 584, 751, 829, 842
FalI AAGNNNNNCTT 2 cut(s) 372, 404
FatI CATG 7 cut(s) 270, 292, 454, 580, 747, 825, 838
FauI CCCGC 1 cut(s) 955
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 975
FokI GGATG 7 cut(s) 17, 22, 340, 635, 656, 704, 808
Fsp4HI GCNGC 1 cut(s) 975
FspBI CTAG 8 cut(s) 252, 312, 338, 633, 914, 978, 989, 1048
GlaI GCGC 1 cut(s) 940
GluI GCNGC 1 cut(s) 975
HaeIII GGCC 3 cut(s) 319, 1003, 1034
HapII CCGG 2 cut(s) 89, 1031
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 941
Hin1II CATG 7 cut(s) 274, 296, 458, 584, 751, 829, 842
Hin6I GCGC 1 cut(s) 939
HinP1I GCGC 1 cut(s) 939
HindIII AAGCTT 2 cut(s) 168, 372
HinfI GANTC 6 cut(s) 13, 308, 479, 524, 608, 760
HpaII CCGG 2 cut(s) 89, 1031
HphI GGTGA 1 cut(s) 433
Hpy188I TCNGA 4 cut(s) 183, 280, 613, 1012
Hpy188III TCNNGA 8 cut(s) 58, 131, 293, 326, 380, 489, 515, 839
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 5 cut(s) 178, 191, 330, 448, 774
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 9 cut(s) 100, 217, 349, 370, 425, 535, 602, 926, 965
HpyF10VI GCNNNNNNNGC 8 cut(s) 248, 422, 517, 923, 936, 947, 956, 971
Hsp92II CATG 7 cut(s) 274, 296, 458, 584, 751, 829, 842
HspAI GCGC 1 cut(s) 939
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 4 cut(s) 229, 469, 831, 900
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 2 cut(s) 649, 697
LpnPI CCDG 5 cut(s) 102, 944, 1017, 1033, 1044
Lsp1109I GCAGC 1 cut(s) 961
LweI GCATC 2 cut(s) 520, 634
MaeI CTAG 8 cut(s) 252, 312, 338, 633, 914, 978, 989, 1048
MalI GATC 4 cut(s) 231, 471, 833, 902
MboI GATC 4 cut(s) 229, 469, 831, 900
MboII GAAGA 5 cut(s) 341, 626, 629, 797, 806
MfeI CAATTG 2 cut(s) 212, 344
MflI RGATCY 2 cut(s) 229, 831
MhlI GDGCHC 2 cut(s) 89, 875
MluCI AATT 8 cut(s) 66, 188, 212, 255, 332, 344, 573, 789
MlyI GAGTC 4 cut(s) 7, 317, 488, 769
MroXI GAANNNNTTC 1 cut(s) 188
MseI TTAA 1 cut(s) 885
MslI CAYNNNNRTG 2 cut(s) 399, 585
MspI CCGG 2 cut(s) 89, 1031
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 2 cut(s) 212, 344
MwoI GCNNNNNNNGC 8 cut(s) 248, 422, 517, 923, 936, 947, 956, 971
NciI CCSGG 1 cut(s) 89
NcoI CCATGG 3 cut(s) 270, 747, 825
NdeII GATC 4 cut(s) 229, 469, 831, 900
NheI GCTAGC 4 cut(s) 337, 913, 977, 988
NlaIII CATG 7 cut(s) 274, 296, 458, 584, 751, 829, 842
NmeAIII GCCGAG 2 cut(s) 979, 1023
PagI TCATGA 2 cut(s) 292, 838
PceI AGGCCT 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 188
PfeI GAWTC 2 cut(s) 524, 608
PkrI GCNGC 1 cut(s) 976
PleI GAGTC 4 cut(s) 7, 316, 487, 768
PpsI GAGTC 4 cut(s) 7, 316, 487, 768
PsuI RGATCY 2 cut(s) 229, 831
RsaI GTAC 3 cut(s) 113, 144, 567
RsaNI GTAC 3 cut(s) 112, 143, 566
RseI CAYNNNNRTG 2 cut(s) 399, 585
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 1 cut(s) 885
SatI GCNGC 1 cut(s) 975
Sau3AI GATC 4 cut(s) 229, 469, 831, 900
SchI GAGTC 4 cut(s) 7, 317, 488, 769
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 2 cut(s) 89, 875
SfaNI GCATC 2 cut(s) 520, 634
SmiMI CAYNNNNRTG 2 cut(s) 399, 585
SmlI CTYRAG 3 cut(s) 246, 378, 515
SmoI CTYRAG 3 cut(s) 246, 378, 515
Sse9I AATT 8 cut(s) 66, 188, 212, 255, 332, 344, 573, 789
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 2 cut(s) 647, 948
SspI AATATT 1 cut(s) 461
SspMI CTAG 8 cut(s) 252, 312, 338, 633, 914, 978, 989, 1048
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 5 cut(s) 270, 747, 800, 825, 849
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 4 cut(s) 364, 507, 684, 738
TasI AATT 8 cut(s) 66, 188, 212, 255, 332, 344, 573, 789
TatI WGTACW 2 cut(s) 111, 565
TfiI GAWTC 2 cut(s) 524, 608
Tru1I TTAA 1 cut(s) 885
Tru9I TTAA 1 cut(s) 885
TseI GCWGC 1 cut(s) 974
TspDTI ATGAA 7 cut(s) 180, 181, 471, 603, 670, 718, 798
XapI RAATTY 3 cut(s) 66, 188, 255
XmnI GAANNNNTTC 1 cut(s) 188
XspI CTAG 8 cut(s) 252, 312, 338, 633, 914, 978, 989, 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.