Rroxscaffold_4G00309420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000195
Physical Location & Seq
Forward (+)
31218556 .. 31222457
3902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309420.1

Sequence Viewer

Length: 306 bp
ATGGGCACTTCCACTTCATCAAAATTAAGTCGTTTCATCTTGACATTTGGTTTATATCTATGCTGCTCAACTCCCGGGTACCACCTAGTGACCAAGAAAAGGATGGAAAACCACGCCTGTCCACACAGCTCTATTCCTTTCAAACCATATTGCCCACAATGCAGTAAAAAAACAAATCACGCTGCTCACCCACAAGTGTCCGACACCGACAGCACCCGCTCCACCAACTGCCTAGATTTTATGCAAGAATGTGAGTACAAGATGGGCATGTATCAAGAGACATTTGTATCCAATGCATATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.44

Weight (kDa)

8.49

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 219
AciI CCGC 1 cut(s) 217
AdeI CACNNNGTG 1 cut(s) 88
AfaI GTAC 2 cut(s) 80, 257
AfiI CCNNNNNNNGG 1 cut(s) 99
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 63, 182
Asp718I GGTACC 1 cut(s) 78
AsuC2I CCSGG 2 cut(s) 75, 76
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BanI GGYRCC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 50, 169
BccI CCATC 2 cut(s) 97, 256
BciVI GTATCC 1 cut(s) 298
BcnI CCSGG 2 cut(s) 75, 76
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 86, 233
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 2 cut(s) 64, 183
BlsI GCNGC 2 cut(s) 65, 184
Bme1390I CCNGG 2 cut(s) 75, 76
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 2 cut(s) 75, 76
BpuMI CCSGG 2 cut(s) 75, 76
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 50, 169
BshNI GGYRCC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 272
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 2 cut(s) 73, 74
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 2 cut(s) 50, 169
BsuI GTATCC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 108
Cfr9I CCCGGG 1 cut(s) 74
Csp6I GTAC 2 cut(s) 79, 256
CviAII CATG 1 cut(s) 268
CviJI RGCY 1 cut(s) 129
CviKI_1 RGCY 1 cut(s) 129
CviQI GTAC 2 cut(s) 79, 256
DraIII CACNNNGTG 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 298
FaeI CATG 1 cut(s) 271
FaiI YATR 7 cut(s) 55, 61, 148, 242, 269, 298, 304
FatI CATG 1 cut(s) 267
FauI CCCGC 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 64, 183
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 2 cut(s) 64, 183
FspBI CTAG 2 cut(s) 86, 233
GluI GCNGC 2 cut(s) 64, 183
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 271
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 40, 275
Hpy8I GTNNAC 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 162, 244, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
Hsp92II CATG 1 cut(s) 271
KpnI GGTACC 1 cut(s) 82
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 2 cut(s) 88, 130
Lsp1109I GCAGC 2 cut(s) 50, 169
MaeI CTAG 2 cut(s) 86, 233
MaeIII GTNAC 1 cut(s) 88
MbiI CCGCTC 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 225
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 1 cut(s) 26
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 75, 76
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 75, 76
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 271
PkrI GCNGC 2 cut(s) 65, 184
PspN4I GGNNCC 1 cut(s) 80
RsaI GTAC 2 cut(s) 80, 257
RsaNI GTAC 2 cut(s) 79, 256
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 2 cut(s) 64, 183
ScrFI CCNGG 2 cut(s) 75, 76
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 87, 131
SmaI CCCGGG 1 cut(s) 76
Sse9I AATT 1 cut(s) 23
SsiI CCGC 1 cut(s) 217
SspMI CTAG 2 cut(s) 86, 233
StyD4I CCNGG 2 cut(s) 73, 74
TasI AATT 1 cut(s) 23
TatI WGTACW 1 cut(s) 255
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 63, 182
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 6, 25
TspMI CCCGGG 1 cut(s) 74
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmaI CCCGGG 1 cut(s) 74
XspI CTAG 2 cut(s) 86, 233
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.