Rmu_sc0000245.1_g000013

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000245.1
OG0000195
Physical Location & Seq
Reverse (-)
49967 .. 54593
4627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000245.1_g000013.1.cds

Sequence Viewer

Length: 2046 bp
atggttgatcatgtcaccgcacgtctcgctgcggccttggccatctcggaggacggtcggatgtcctttggccaggctggcgttgctgctgtgtcttcccaccattttgctgtcggtaaactgctctttgttacggctaaacgccgcgccgatcccaaggcttttatgggcaccatgacctctctctgggggtttggtaatcgtctgtctgtccgggcacatcaagaccggtatgtgcttcaattctctcaattagaggaccgatcaaggattttggatggtggtctgtggttctttggtaagtgggcggttgctattacggaattcgacggcctgcagaatgtcgcggttgtcttgctcctctctatgccggtttgggttgagatcatgggcctccctcctgctcttatcactgagggagcggtggcgctaattggggctacgttaggggaggtgttacacctcgacaggccagggattagcaaggcatctgcaatggtgcgattcaagtatgaacgtctcgttggattttttcgtgtctgtggactgatggagcacccactatctggttgtactggagccccagaggcagtggtgatctcagtcggccataaccctaaccctcactcggctagggtttcatcctcttatagccagcaagctccgagccttgcaaaggtgttggctcaatcttcagcaccaaatttgttctttgatatgcccagatcacttcatattccggctccagtaactgtgcctagcataaagtccatgcaggttgatgttcaggccgataatccaattacaggaaagaaaagacctgcagtggtggctttggtacaatattcaaagcataagagaactagtgtcgtgccccctccaatgcttcggggatatgagcaacaaagttataatggtgaaggttatcaagagtggaatccctatatcgagagcccaatgctttgttacaaccaaccttgtgctttgtgtaattctccgtggctttcatcttttgagtgctctttgagatttgaatgcccaaattttatgcaagattgtgagtacaagatgaacatgtatcaagagacatttgtacccgacgcatatccacaagatgaagcttatgagcctaggaaggaattcgttgaaggcctactagctcaattgcaagcctcccgagatcttttacaagcctctcaagttaggatttcacaagagatcatgttgtccgaagtatatcctcatgagcaagcgtatgagtctaggaagccttctcttgaagaattgctagctcaattgcaagggtcccaagctcgattgcaagcttctcaagaaatacttatacataccaatgagcaacttgagactagtcttgcacaagagccaccctacaccatttatgagcatgaatctttctttgaccaagtggagcctatttcaagagaagaagtgtatatcgagcatcttgagcaagaatcctttatgcaagttgaaaatgatgatagtgatgttgatctacaagaaattgagcttggttatgaaagtttcaatgcaagtgaggtgagagactacacttcggaggaatgggtgcaatattggaaatctaagcttccaaatgaaggagagaaatttgaagatgattccgaagaagaggatgtcttatctagtgaggaggatgtggggtttgaagttatccaccataatcccttgttcatcaaggaggatgcggagcttgaagtcatacaccataatcccttattcattgaggtagatgttcccaaggaggaagatagtccttcaatactttgtgatggtcaaaaaattgaagagccaaggactttctctcctcctacatccaaggagatccattatgagcttcccaaggtggaaagtagagcattaagcacttatgttcttaatgagagcattgggatcaaggtacttttacctcctaatccatcattaagtgatcaatatttctacaatgaggtgatggattggaaaggaaatggagcacttgcactcatcctttcccatcactcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

681

Amino Acids

76.72

Weight (kDa)

4.79

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
Acc36I ACCTGC 2 cut(s) 766, 829
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 566
AccBSI CCGCTC 1 cut(s) 422
AccII CGCG 2 cut(s) 147, 347
AciI CCGC 7 cut(s) 18, 32, 145, 308, 347, 422, 1727
AclWI GGATC 3 cut(s) 146, 1858, 1940
AcoI YGGCCR 3 cut(s) 39, 70, 607
AcsI RAATTY 5 cut(s) 323, 703, 1042, 1139, 1628
AcuI CTGAAG 1 cut(s) 678
AfaI GTAC 5 cut(s) 574, 840, 1064, 1095, 1941
AfiI CCNNNNNNNGG 6 cut(s) 186, 566, 628, 676, 806, 1619
AflIII ACRYGT 1 cut(s) 1074
AgeI ACCGGT 1 cut(s) 228
AhlI ACTAGT 2 cut(s) 863, 1367
AjiI CACGTC 1 cut(s) 23
AjnI CCWGG 2 cut(s) 72, 472
AjuI GAANNNNNNNTTGG 4 cut(s) 507, 539, 1515, 1547
Alw21I GWGCWC 3 cut(s) 558, 1022, 2017
Alw26I GTCTC 5 cut(s) 29, 524, 1079, 1358, 1560
AlwI GGATC 3 cut(s) 146, 1858, 1940
AlwNI CAGNNNCTG 1 cut(s) 752
Ama87I CYCGRG 1 cut(s) 1176
AoxI GGCC 9 cut(s) 33, 39, 70, 331, 391, 470, 607, 789, 1150
ApeKI GCWGC 2 cut(s) 29, 86
ApoI RAATTY 5 cut(s) 323, 703, 1042, 1139, 1628
AsiGI ACCGGT 1 cut(s) 228
Asp700I GAANNNNTTC 1 cut(s) 1139
AspA2I CCTAGG 1 cut(s) 1130
AspLEI GCGC 2 cut(s) 149, 430
AspS9I GGNCC 3 cut(s) 259, 391, 1305
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 5 cut(s) 7, 607, 929, 1573, 2002
AsuNHI GCTAGC 1 cut(s) 1288
AvaI CYCGRG 1 cut(s) 1176
AvaII GGWCC 2 cut(s) 259, 1305
AvrII CCTAGG 1 cut(s) 1130
BaeGI GKGCMC 3 cut(s) 173, 220, 876
BaeI ACNNNNGTAYC 2 cut(s) 1077, 1110
BalI TGGCCA 2 cut(s) 41, 72
BanI GGYRCC 1 cut(s) 170
BanII GRGCYC 2 cut(s) 583, 956
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 3 cut(s) 558, 1022, 2017
BbvI GCAGC 2 cut(s) 16, 73
BccI CCATC 7 cut(s) 50, 272, 544, 1805, 1966, 1987, 2043
BceAI ACGGC 2 cut(s) 150, 346
BciT130I CCWGG 2 cut(s) 74, 474
BclI TGATCA 2 cut(s) 7, 1969
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 5 cut(s) 29, 524, 1079, 1358, 1560
BcuI ACTAGT 2 cut(s) 863, 1367
BfaI CTAG 9 cut(s) 633, 759, 864, 1131, 1157, 1263, 1289, 1368, 1665
BfmI CTRYAG 2 cut(s) 335, 822
BfoI RGCGCY 1 cut(s) 431
BfuAI ACCTGC 2 cut(s) 766, 829
BglI GCCNNNNNGGC 2 cut(s) 78, 587
BglII AGATCT 1 cut(s) 1180
BisI GCNGC 4 cut(s) 30, 33, 87, 145
BlnI CCTAGG 1 cut(s) 1130
BlsI GCNGC 4 cut(s) 31, 34, 88, 146
Bme1390I CCNGG 3 cut(s) 74, 215, 474
Bme18I GGWCC 2 cut(s) 259, 1305
BmeT110I CYCGRG 1 cut(s) 1176
BmgBI CACGTC 1 cut(s) 23
BmgT120I GGNCC 3 cut(s) 259, 391, 1305
BmiI GGNNCC 6 cut(s) 172, 580, 744, 1306, 1307, 1431
BmrFI CCNGG 3 cut(s) 74, 215, 474
BmsI GCATC 3 cut(s) 497, 1471, 1714
BmtI GCTAGC 1 cut(s) 1292
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 2 cut(s) 597, 729
BpuEI CTTGAG 4 cut(s) 1182, 1314, 1382, 1487
BpuMI CCSGG 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 1512
BsaJI CCNNGG 9 cut(s) 36, 156, 473, 998, 1130, 1779, 1832, 1857, 1881
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 1828, 1858
Bsc4I CCNNNNNNNGG 6 cut(s) 186, 566, 628, 676, 806, 1619
Bse118I RCCGGY 2 cut(s) 228, 370
Bse1I ACTGG 2 cut(s) 580, 746
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 1 cut(s) 1512
BseBI CCWGG 2 cut(s) 74, 474
BseDI CCNNGG 9 cut(s) 36, 156, 473, 998, 1130, 1779, 1832, 1857, 1881
BseGI GGATG 8 cut(s) 66, 283, 641, 1660, 1681, 1729, 1853, 2025
BseJI GATNNNNATC 1 cut(s) 1512
BseLI CCNNNNNNNGG 6 cut(s) 186, 566, 628, 676, 806, 1619
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 2 cut(s) 405, 615
BseNI ACTGG 2 cut(s) 580, 746
BseRI GAGGAG 3 cut(s) 350, 1685, 1836
BseSI GKGCMC 3 cut(s) 173, 220, 876
BseXI GCAGC 2 cut(s) 16, 73
Bsh1236I CGCG 2 cut(s) 147, 347
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 9 cut(s) 35, 41, 72, 333, 393, 472, 609, 791, 1152
BshNI GGYRCC 1 cut(s) 170
BshTI ACCGGT 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 3 cut(s) 558, 1022, 2017
BsiHKCI CYCGRG 1 cut(s) 1176
BsiSI CCGG 4 cut(s) 214, 229, 371, 740
BslFI GGGAC 1 cut(s) 1291
BslI CCNNNNNNNGG 6 cut(s) 186, 566, 628, 676, 806, 1619
BsmAI GTCTC 5 cut(s) 29, 524, 1079, 1358, 1560
BsmBI CGTCTC 2 cut(s) 29, 524
BsmFI GGGAC 1 cut(s) 1291
BsmI GAATGC 1 cut(s) 1040
BsnI GGCC 9 cut(s) 35, 41, 72, 333, 393, 472, 609, 791, 1152
BsoBI CYCGRG 1 cut(s) 1176
Bsp1286I GDGCHC 8 cut(s) 173, 220, 558, 583, 876, 956, 1022, 2017
BspACI CCGC 7 cut(s) 18, 32, 145, 308, 347, 422, 1727
BspANI GGCC 9 cut(s) 35, 41, 72, 333, 393, 472, 609, 791, 1152
BspCNI CTCAG 2 cut(s) 406, 614
BspFNI CGCG 2 cut(s) 147, 347
BspHI TCATGA 1 cut(s) 1243
BspLI GGNNCC 6 cut(s) 172, 580, 744, 1306, 1307, 1431
BspMAI CTGCAG 2 cut(s) 339, 826
BspMI ACCTGC 2 cut(s) 766, 829
BspOI GCTAGC 1 cut(s) 1292
BspPI GGATC 3 cut(s) 146, 1858, 1940
BspQI GCTCTTC 1 cut(s) 1821
BspT107I GGYRCC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 2 cut(s) 228, 370
BsrI ACTGG 2 cut(s) 580, 746
BssAI RCCGGY 2 cut(s) 228, 370
BssECI CCNNGG 9 cut(s) 36, 156, 473, 998, 1130, 1779, 1832, 1857, 1881
BssT1I CCWWGG 7 cut(s) 36, 156, 1130, 1779, 1832, 1857, 1881
Bst2UI CCWGG 2 cut(s) 74, 474
Bst4CI ACNGT 2 cut(s) 56, 754
Bst6I CTCTTC 2 cut(s) 1644, 1821
BstC8I GCNNGC 8 cut(s) 79, 335, 656, 660, 1170, 1251, 1290, 1323
BstDEI CTNAG 3 cut(s) 414, 601, 1605
BstDSI CCRYGG 1 cut(s) 998
BstENI CCTNNNNNAGG 1 cut(s) 674
BstF5I GGATG 8 cut(s) 66, 283, 641, 1660, 1681, 1729, 1853, 2025
BstFNI CGCG 2 cut(s) 147, 347
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 2 cut(s) 149, 430
BstMAI GTCTC 5 cut(s) 29, 524, 1079, 1358, 1560
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 7 cut(s) 26, 38, 78, 83, 587, 830, 1468
BstNI CCWGG 2 cut(s) 74, 474
BstNSI RCATGY 1 cut(s) 1078
BstSCI CCNGG 3 cut(s) 72, 213, 472
BstSFI CTRYAG 2 cut(s) 335, 822
BstSLI GKGCMC 3 cut(s) 173, 220, 876
BstUI CGCG 2 cut(s) 147, 347
BstV1I GCAGC 2 cut(s) 16, 73
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 2 cut(s) 1180, 1863
BstYI RGATCY 2 cut(s) 1180, 1863
BsuRI GGCC 9 cut(s) 35, 41, 72, 333, 393, 472, 609, 791, 1152
BtgI CCRYGG 1 cut(s) 998
BtrI CACGTC 1 cut(s) 23
BtsCI GGATG 8 cut(s) 66, 283, 641, 1660, 1681, 1729, 1853, 2025
BtsI GCAGTG 2 cut(s) 597, 831
BtsIMutI CAGTG 3 cut(s) 411, 597, 831
BveI ACCTGC 2 cut(s) 766, 829
Cac8I GCNNGC 8 cut(s) 79, 335, 656, 660, 1170, 1251, 1290, 1323
CaiI CAGNNNCTG 1 cut(s) 752
CciI TCATGA 1 cut(s) 1243
CfoI GCGC 2 cut(s) 149, 430
Cfr10I RCCGGY 2 cut(s) 228, 370
Cfr13I GGNCC 3 cut(s) 259, 391, 1305
CseI GACGC 1 cut(s) 1109
Csp6I GTAC 5 cut(s) 573, 839, 1063, 1094, 1940
CspAI ACCGGT 1 cut(s) 228
CviAII CATG 8 cut(s) 11, 175, 388, 772, 1075, 1222, 1244, 1406
CviQI GTAC 5 cut(s) 573, 839, 1063, 1094, 1940
DdeI CTNAG 3 cut(s) 414, 601, 1605
EaeI YGGCCR 3 cut(s) 39, 70, 607
Eam1104I CTCTTC 2 cut(s) 1644, 1821
EarI CTCTTC 2 cut(s) 1644, 1821
Eco130I CCWWGG 7 cut(s) 36, 156, 1130, 1779, 1832, 1857, 1881
Eco147I AGGCCT 1 cut(s) 1152
Eco24I GRGCYC 2 cut(s) 583, 956
Eco47I GGWCC 2 cut(s) 259, 1305
Eco57I CTGAAG 1 cut(s) 678
Eco88I CYCGRG 1 cut(s) 1176
EcoNI CCTNNNNNAGG 1 cut(s) 674
EcoO109I RGGNCCY 1 cut(s) 1305
EcoRI GAATTC 2 cut(s) 323, 1139
EcoRII CCWGG 2 cut(s) 72, 472
EcoT14I CCWWGG 7 cut(s) 36, 156, 1130, 1779, 1832, 1857, 1881
EcoT38I GRGCYC 2 cut(s) 583, 956
ErhI CCWWGG 7 cut(s) 36, 156, 1130, 1779, 1832, 1857, 1881
Esp3I CGTCTC 2 cut(s) 29, 524
FaeI CATG 8 cut(s) 14, 178, 391, 775, 1078, 1225, 1247, 1409
FalI AAGNNNNNCTT 2 cut(s) 1323, 1355
FaqI GGGAC 1 cut(s) 1291
FatI CATG 8 cut(s) 10, 174, 387, 771, 1074, 1221, 1243, 1405
FbaI TGATCA 2 cut(s) 7, 1969
Fnu4HI GCNGC 4 cut(s) 30, 33, 87, 145
FokI GGATG 8 cut(s) 73, 290, 628, 1667, 1688, 1736, 1840, 2012
FriOI GRGCYC 2 cut(s) 583, 956
Fsp4HI GCNGC 4 cut(s) 30, 33, 87, 145
FspBI CTAG 9 cut(s) 633, 759, 864, 1131, 1157, 1263, 1289, 1368, 1665
GlaI GCGC 2 cut(s) 148, 429
GluI GCNGC 4 cut(s) 30, 33, 87, 145
GsuI CTGGAG 2 cut(s) 597, 729
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 9 cut(s) 35, 41, 72, 333, 393, 472, 609, 791, 1152
HapII CCGG 4 cut(s) 214, 229, 371, 740
HgaI GACGC 1 cut(s) 1109
HhaI GCGC 2 cut(s) 149, 430
Hin1II CATG 8 cut(s) 14, 178, 391, 775, 1078, 1225, 1247, 1409
Hin6I GCGC 2 cut(s) 147, 428
HinP1I GCGC 2 cut(s) 147, 428
HindIII AAGCTT 3 cut(s) 1119, 1323, 1607
HinfI GANTC 6 cut(s) 504, 937, 1259, 1409, 1475, 1640
HpaII CCGG 4 cut(s) 214, 229, 371, 740
HphI GGTGA 5 cut(s) 7, 607, 929, 1573, 2002
Hpy166II GTNNAC 2 cut(s) 119, 545
Hpy188I TCNGA 6 cut(s) 49, 60, 666, 1231, 1579, 1645
Hpy8I GTNNAC 2 cut(s) 119, 545
Hpy99I CGWCG 2 cut(s) 332, 1103
HpyAV CCTTC 6 cut(s) 914, 1129, 1142, 1281, 1613, 1806
HpyCH4III ACNGT 2 cut(s) 56, 754
HpyCH4IV ACGT 3 cut(s) 22, 443, 517
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 38, 78, 83, 587, 830, 1468
HpyF3I CTNAG 3 cut(s) 414, 601, 1605
HpySE526I ACGT 3 cut(s) 22, 443, 517
Hsp92II CATG 8 cut(s) 14, 178, 391, 775, 1078, 1225, 1247, 1409
HspAI GCGC 2 cut(s) 147, 428
KflI GGGWCCC 1 cut(s) 1305
Ksp22I TGATCA 2 cut(s) 7, 1969
LguI GCTCTTC 1 cut(s) 1821
LmnI GCTCC 9 cut(s) 363, 419, 553, 578, 667, 748, 1429, 1729, 2012
Lsp1109I GCAGC 2 cut(s) 16, 73
LweI GCATC 3 cut(s) 497, 1471, 1714
MaeI CTAG 9 cut(s) 633, 759, 864, 1131, 1157, 1263, 1289, 1368, 1665
MaeII ACGT 3 cut(s) 22, 443, 517
MaeIII GTNAC 5 cut(s) 13, 130, 456, 748, 965
MbiI CCGCTC 1 cut(s) 422
MboII GAAGA 9 cut(s) 87, 684, 1292, 1457, 1646, 1658, 1661, 1799, 1838
MfeI CAATTG 2 cut(s) 1163, 1295
MflI RGATCY 2 cut(s) 1180, 1863
MhlI GDGCHC 8 cut(s) 173, 220, 558, 583, 876, 956, 1022, 2017
MlsI TGGCCA 2 cut(s) 41, 72
MluNI TGGCCA 2 cut(s) 41, 72
MlyI GAGTC 1 cut(s) 1268
MmeI TCCRAC 2 cut(s) 38, 505
Mox20I TGGCCA 2 cut(s) 41, 72
MroXI GAANNNNTTC 1 cut(s) 1139
MscI TGGCCA 2 cut(s) 41, 72
MseI TTAA 4 cut(s) 1901, 1917, 1964, 2044
MslI CAYNNNNRTG 1 cut(s) 1350
Msp20I TGGCCA 2 cut(s) 41, 72
MspI CCGG 4 cut(s) 214, 229, 371, 740
MspR9I CCNGG 3 cut(s) 74, 215, 474
MunI CAATTG 2 cut(s) 1163, 1295
Mva1269I GAATGC 1 cut(s) 1040
MvaI CCWGG 2 cut(s) 74, 474
MvnI CGCG 2 cut(s) 147, 347
MwoI GCNNNNNNNGC 7 cut(s) 26, 38, 78, 83, 587, 830, 1468
NciI CCSGG 1 cut(s) 215
NheI GCTAGC 1 cut(s) 1288
NlaIII CATG 8 cut(s) 14, 178, 391, 775, 1078, 1225, 1247, 1409
NlaIV GGNNCC 6 cut(s) 172, 580, 744, 1306, 1307, 1431
NmeAIII GCCGAG 1 cut(s) 608
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 1078
PagI TCATGA 1 cut(s) 1243
PceI AGGCCT 1 cut(s) 1152
PciI ACATGT 1 cut(s) 1074
PciSI GCTCTTC 1 cut(s) 1821
PctI GAATGC 1 cut(s) 1040
PdmI GAANNNNTTC 1 cut(s) 1139
PfeI GAWTC 5 cut(s) 504, 937, 1409, 1475, 1640
PflMI CCANNNNNTGG 1 cut(s) 566
PinAI ACCGGT 1 cut(s) 228
PkrI GCNGC 4 cut(s) 31, 34, 88, 146
PleI GAGTC 1 cut(s) 1267
PpsI GAGTC 1 cut(s) 1267
PpuMI RGGWCCY 1 cut(s) 1305
PscI ACATGT 1 cut(s) 1074
PsiI TTATAA 1 cut(s) 912
Psp5II RGGWCCY 1 cut(s) 1305
Psp6I CCWGG 2 cut(s) 72, 472
PspGI CCWGG 2 cut(s) 72, 472
PspN4I GGNNCC 6 cut(s) 172, 580, 744, 1306, 1307, 1431
PspPI GGNCC 3 cut(s) 259, 391, 1305
PspPPI RGGWCCY 1 cut(s) 1305
PstI CTGCAG 2 cut(s) 339, 826
PstNI CAGNNNCTG 1 cut(s) 752
PsuI RGATCY 2 cut(s) 1180, 1863
RsaI GTAC 5 cut(s) 574, 840, 1064, 1095, 1941
RsaNI GTAC 5 cut(s) 573, 839, 1063, 1094, 1940
RseI CAYNNNNRTG 1 cut(s) 1350
SapI GCTCTTC 1 cut(s) 1821
SaqAI TTAA 4 cut(s) 1901, 1917, 1964, 2044
SatI GCNGC 4 cut(s) 30, 33, 87, 145
Sau96I GGNCC 3 cut(s) 259, 391, 1305
SchI GAGTC 1 cut(s) 1268
ScrFI CCNGG 3 cut(s) 74, 215, 474
SduI GDGCHC 8 cut(s) 173, 220, 558, 583, 876, 956, 1022, 2017
SfaNI GCATC 3 cut(s) 497, 1471, 1714
SfcI CTRYAG 2 cut(s) 335, 822
SinI GGWCC 2 cut(s) 259, 1305
SmiMI CAYNNNNRTG 1 cut(s) 1350
SmlI CTYRAG 4 cut(s) 1197, 1329, 1361, 1466
SmoI CTYRAG 4 cut(s) 1197, 1329, 1361, 1466
SpeI ACTAGT 2 cut(s) 863, 1367
SseBI AGGCCT 1 cut(s) 1152
SsiI CCGC 7 cut(s) 18, 32, 145, 308, 347, 422, 1727
SspI AATATT 3 cut(s) 845, 1595, 1976
SspMI CTAG 9 cut(s) 633, 759, 864, 1131, 1157, 1263, 1289, 1368, 1665
StuI AGGCCT 1 cut(s) 1152
StyD4I CCNGG 3 cut(s) 72, 213, 472
StyI CCWWGG 7 cut(s) 36, 156, 1130, 1779, 1832, 1857, 1881
TaaI ACNGT 2 cut(s) 56, 754
TaiI ACGT 3 cut(s) 25, 446, 520
TaqI TCGA 5 cut(s) 327, 465, 948, 1315, 1458
TaqII GACCGA 1 cut(s) 276
TatI WGTACW 2 cut(s) 572, 1062
TauI GCSGC 2 cut(s) 35, 147
TfiI GAWTC 5 cut(s) 504, 937, 1409, 1475, 1640
Tru1I TTAA 4 cut(s) 1901, 1917, 1964, 2044
Tru9I TTAA 4 cut(s) 1901, 1917, 1964, 2044
TscAI CASTG 3 cut(s) 418, 597, 831
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 29, 86
Tsp45I GTSAC 1 cut(s) 13
TspGWI ACGGA 2 cut(s) 335, 987
TspRI CASTG 3 cut(s) 418, 597, 831
Van91I CCANNNNNTGG 1 cut(s) 566
VpaK11BI GGWCC 2 cut(s) 259, 1305
XagI CCTNNNNNAGG 1 cut(s) 674
XapI RAATTY 5 cut(s) 323, 703, 1042, 1139, 1628
XceI RCATGY 1 cut(s) 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmaJI CCTAGG 1 cut(s) 1130
XmnI GAANNNNTTC 1 cut(s) 1139
XspI CTAG 9 cut(s) 633, 759, 864, 1131, 1157, 1263, 1289, 1368, 1665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.