Rroxscaffold_7G00212090

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
62550944 .. 62551890
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212090.1

Sequence Viewer

Length: 564 bp
ATGGAGCTATGGATGGGAAGATCGAGGGGATATGAGCAAGAAAGTTTCTATGGTGGAGGTCATCAAGAGTGGAATTCTCATGCGGTGGGTTCTATGTCCTCCGGCAATGAAACTTGTGCTTTGTGTAATTCTCTGTGGCATTCACCTTTTGAGTGCTCTTTGAGATTTGAGTGCCTGGAATTTATGCAAGAGTTGGAGCCCATTTCAAGAGAAGAGGTACATATCAAGCATCTTGAGCAAGAATTGTTTATGCAAGTTGAAGATGATTATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTGTGAAAGTTCCAATGCAAGTGAGGTAGGAGACTACACTTCAGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCCAAATGGAGGGGAGATATTTGAAGATGATTCCGAAGAGGAAGATGGCTTGTCTAGTGAGGAGGATGCGGAGTTTGAAGTCATACACCATAATCCCTTGTTCATTGAGGAGGACGCGGAGCTTCAAGTCATATACCATAATCCCTTATTCATTGAGGTCAATATTCCCATAGAGGAAGAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.67

Weight (kDa)

4.05

Isoelectric Point (pI)

84.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 494
AciI CCGC 3 cut(s) 83, 446, 494
AcsI RAATTY 2 cut(s) 73, 179
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 2 cut(s) 219, 285
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 5 cut(s) 207, 260, 401, 455, 503
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 4 cut(s) 7, 298, 376, 499
AluI AGCT 4 cut(s) 7, 298, 376, 499
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 327
ApoI RAATTY 2 cut(s) 73, 179
AsuHPI GGTGA 1 cut(s) 135
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 158
BccI CCATC 2 cut(s) 7, 416
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 2 cut(s) 432, 562
BglII AGATCT 1 cut(s) 558
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 238, 433
BpuEI CTTGAG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 2 cut(s) 18, 448
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMI GCAATG 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 452, 500
Bsh1236I CGCG 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 158, 201
Bsp1407I TGTACA 1 cut(s) 283
Bsp143I GATC 2 cut(s) 20, 558
BspACI CCGC 3 cut(s) 83, 446, 494
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 112
BsrGI TGTACA 1 cut(s) 283
BssMI GATC 2 cut(s) 20, 558
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 3 cut(s) 207, 408, 549
BstAUI TGTACA 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 18, 448
BstFNI CGCG 1 cut(s) 494
BstKTI GATC 2 cut(s) 23, 561
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 2 cut(s) 20, 558
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstUI CGCG 1 cut(s) 494
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BtsCI GGATG 2 cut(s) 18, 448
CseI GACGC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 218, 284
CviAII CATG 1 cut(s) 80
CviJI RGCY 6 cut(s) 7, 199, 298, 376, 426, 499
CviKI_1 RGCY 6 cut(s) 7, 199, 298, 376, 426, 499
CviQI GTAC 2 cut(s) 218, 284
DdeI CTNAG 1 cut(s) 372
DpnI GATC 2 cut(s) 22, 560
DpnII GATC 2 cut(s) 20, 558
Eam1104I CTCTTC 3 cut(s) 207, 408, 549
EarI CTCTTC 3 cut(s) 207, 408, 549
Eco24I GRGCYC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 1 cut(s) 83
FatI CATG 1 cut(s) 79
FokI GGATG 2 cut(s) 25, 455
FriOI GRGCYC 1 cut(s) 201
FspBI CTAG 2 cut(s) 432, 562
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 500
Hin1II CATG 1 cut(s) 83
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 1 cut(s) 407
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 135
Hpy188I TCNGA 2 cut(s) 346, 412
Hpy188III TCNNGA 3 cut(s) 65, 207, 233
HpyCH4V TGCA 4 cut(s) 187, 253, 320, 358
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 2 cut(s) 20, 558
LmnI GCTCC 3 cut(s) 4, 196, 496
LpnPI CCDG 3 cut(s) 115, 161, 188
LweI GCATC 2 cut(s) 238, 433
MaeI CTAG 2 cut(s) 432, 562
MalI GATC 2 cut(s) 22, 560
MboI GATC 2 cut(s) 20, 558
MboII GAAGA 6 cut(s) 30, 224, 272, 413, 425, 431
MflI RGATCY 1 cut(s) 558
MhlI GDGCHC 2 cut(s) 158, 201
MluCI AATT 4 cut(s) 73, 127, 179, 242
MmeI TCCRAC 1 cut(s) 174
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 176
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeII GATC 2 cut(s) 20, 558
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 198
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 558
RsaI GTAC 2 cut(s) 219, 285
RsaNI GTAC 2 cut(s) 218, 284
Sau3AI GATC 2 cut(s) 20, 558
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 2 cut(s) 158, 201
SetI ASST 9 cut(s) 9, 61, 148, 219, 300, 330, 378, 501, 537
SfaNI GCATC 2 cut(s) 238, 433
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 4 cut(s) 73, 127, 179, 242
SsiI CCGC 3 cut(s) 83, 446, 494
SspI AATATT 2 cut(s) 362, 541
SspMI CTAG 2 cut(s) 432, 562
StyD4I CCNGG 1 cut(s) 174
TaqI TCGA 1 cut(s) 23
TasI AATT 4 cut(s) 73, 127, 179, 242
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 123, 469, 517
XapI RAATTY 2 cut(s) 73, 179
XspI CTAG 2 cut(s) 432, 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.