Rroxscaffold_5G00378950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000195
Physical Location & Seq
Forward (+)
59490409 .. 59491483
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378950.1

Sequence Viewer

Length: 315 bp
ATGGTACACAGGTATCCCGATGGGTCCCGGCCGATAGTGCCAAACTTAGTGGAGATTTCCCTATGCCCGGATTTTATGCAAAAGTGTGAGAACAAGATGGGAATTTATCAAGAGACATTTGTACCTAATGCATATCCACAAGATGAAGCTTATGAGCCTAGGAAGGAATTCGTTGAAGGACTAATAGCTCAATTGCAAGCCTCCCGAGATCTTTATTTACATGCCTCTCAAGCTAGGATTTCACAAGAGACTATGGTTCCCGAAGCATATCCTCATAAGCAACTGTATGAGTCTAGGAAGCCTAGCTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

12.08

Weight (kDa)

5.56

Isoelectric Point (pI)

54.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 2 cut(s) 102, 167
AfaI GTAC 2 cut(s) 6, 123
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 4 cut(s) 149, 188, 233, 306
AluI AGCT 4 cut(s) 149, 188, 233, 306
Alw26I GTCTC 2 cut(s) 107, 242
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 102, 167
Asp700I GAANNNNTTC 1 cut(s) 167
AspA2I CCTAGG 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 2 cut(s) 28, 68
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 158
BaeI ACNNNNGTAYC 4 cut(s) 29, 29, 105, 138
BccI CCATC 2 cut(s) 14, 91
BciVI GTATCC 1 cut(s) 24
BcnI CCSGG 2 cut(s) 28, 68
BcoDI GTCTC 2 cut(s) 107, 242
BfaI CTAG 4 cut(s) 159, 234, 294, 303
BfuI GTATCC 1 cut(s) 24
BglII AGATCT 1 cut(s) 208
BlnI CCTAGG 1 cut(s) 158
Bme1390I CCNGG 2 cut(s) 28, 68
Bme18I GGWCC 1 cut(s) 24
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 3 cut(s) 25, 26, 258
BmrFI CCNGG 2 cut(s) 28, 68
BpuEI CTTGAG 1 cut(s) 213
BpuMI CCSGG 2 cut(s) 28, 68
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 67
BseX3I CGGCCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 2 cut(s) 28, 68
BslFI GGGAC 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 107, 242
BsmFI GGGAC 1 cut(s) 10
BsnI GGCC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 204
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 25, 26, 258
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 46
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 2 cut(s) 107, 242
BstMBI GATC 1 cut(s) 208
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 37, 230
BstNSI RCATGY 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 26, 66
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BstZI CGGCCG 1 cut(s) 29
BsuI GTATCC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 5, 122
CspCI CAANNNNNGTGG 2 cut(s) 30, 65
CviAII CATG 1 cut(s) 221
CviJI RGCY 8 cut(s) 31, 149, 157, 188, 200, 233, 301, 306
CviKI_1 RGCY 8 cut(s) 31, 149, 157, 188, 200, 233, 301, 306
CviQI GTAC 2 cut(s) 5, 122
DdeI CTNAG 1 cut(s) 46
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 29
EagI CGGCCG 1 cut(s) 29
EclXI CGGCCG 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 24
Eco52I CGGCCG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 158
EcoT22I ATGCAT 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 1 cut(s) 224
FaiI YATR 9 cut(s) 64, 77, 133, 153, 222, 254, 268, 276, 288
FalI AAGNNNNNCTT 1 cut(s) 290
FaqI GGGAC 1 cut(s) 10
FatI CATG 1 cut(s) 220
FspBI CTAG 4 cut(s) 159, 234, 294, 303
HaeIII GGCC 1 cut(s) 31
HapII CCGG 2 cut(s) 28, 68
Hin1II CATG 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 1 cut(s) 290
HpaII CCGG 2 cut(s) 28, 68
Hpy166II GTNNAC 1 cut(s) 7
Hpy188III TCNNGA 4 cut(s) 17, 110, 204, 260
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 2 cut(s) 157, 170
HpyCH4III ACNGT 1 cut(s) 285
HpyCH4V TGCA 3 cut(s) 79, 131, 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 230
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 1 cut(s) 224
KflI GGGWCCC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 208
LpnPI CCDG 2 cut(s) 41, 81
MaeI CTAG 4 cut(s) 159, 234, 294, 303
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MfeI CAATTG 1 cut(s) 191
MflI RGATCY 1 cut(s) 208
MluCI AATT 3 cut(s) 102, 167, 191
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 3 cut(s) 211, 235, 282
Mph1103I ATGCAT 1 cut(s) 133
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 1 cut(s) 313
MspI CCGG 2 cut(s) 28, 68
MspR9I CCNGG 2 cut(s) 28, 68
MunI CAATTG 1 cut(s) 191
MwoI GCNNNNNNNGC 2 cut(s) 37, 230
NciI CCSGG 2 cut(s) 28, 68
NdeII GATC 1 cut(s) 208
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 3 cut(s) 25, 26, 258
NsiI ATGCAT 1 cut(s) 133
NspI RCATGY 1 cut(s) 224
PdmI GAANNNNTTC 1 cut(s) 167
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PpuMI RGGWCCY 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 24
PspN4I GGNNCC 3 cut(s) 25, 26, 258
PspPI GGNCC 1 cut(s) 24
PspPPI RGGWCCY 1 cut(s) 24
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 2 cut(s) 6, 123
RsaNI GTAC 2 cut(s) 5, 122
SaqAI TTAA 1 cut(s) 313
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 2 cut(s) 28, 68
SetI ASST 6 cut(s) 14, 127, 151, 190, 235, 308
SinI GGWCC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 3 cut(s) 102, 167, 191
SspMI CTAG 4 cut(s) 159, 234, 294, 303
StyD4I CCNGG 2 cut(s) 26, 66
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 285
TasI AATT 3 cut(s) 102, 167, 191
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 2 cut(s) 102, 167
XceI RCATGY 1 cut(s) 224
XmaJI CCTAGG 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 4 cut(s) 159, 234, 294, 303
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.