Rroxscaffold_3G00234580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000195
Physical Location & Seq
Reverse (-)
21092642 .. 21093330
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234580.1

Sequence Viewer

Length: 567 bp
ATGTACCACAATCCCGTATTCATTGAGGTCGTACTTGAACATGATTCCAAAAAGGATGATGGCTTATGTAGTGAGGAGGATGTGGAGTTTGAAGTCATAAACCATAATCCCTTATTCATTGAGGCTGATATTCCCATGGAGGAAGAGAGTCCTTCACTACCTTATGATGAAGAAGTTGAAAAGGCAAGGACTTTCTCTCCTCCCACATCCAAAGAGATGCATCATGAACTTCCCAAGCTGGAGAGTAGGACAATGAGCATTTATGTTCTTAATGGGAAGATTGAGATTAAGGGCACCATCTCGGGCACCATGGTGATCGAGCCCGTGACCCAGGCTGCCGGGCTGGCCCAAGAAGAAGAGAAGAGGGAGACGCGCGTAGCCGAAGACGTGAAGCCCAACCTCTTGTCGTCTAGCGCCGACAGCTTAGCGGGGAGGGTTTGCGCCATGATTTTGTCGTCTAGTGGCGTGGGGGTGCAGTGGGGGTGCGACGTGGCGTGTAGCCGTTGGGCTACTTTTGAGTTTGAATGCAACGGTCCACAGATCTGGACCGTTGATTTTGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.98

Weight (kDa)

4.43

Isoelectric Point (pI)

70.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 293, 305
AccII CGCG 2 cut(s) 373, 375
AciI CCGC 1 cut(s) 428
AfaI GTAC 2 cut(s) 5, 33
AgsI TTSAA 4 cut(s) 38, 92, 179, 524
AjiI CACGTC 2 cut(s) 388, 490
AjnI CCWGG 1 cut(s) 330
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 2 cut(s) 238, 423
AluI AGCT 2 cut(s) 238, 423
Alw26I GTCTC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 335
AspLEI GCGC 3 cut(s) 375, 416, 443
AspS9I GGNCC 3 cut(s) 346, 533, 546
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 2 cut(s) 533, 546
BaeGI GKGCMC 2 cut(s) 296, 308
BanI GGYRCC 2 cut(s) 293, 305
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 322
BccI CCATC 2 cut(s) 53, 305
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 1 cut(s) 332
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 2 cut(s) 411, 459
BfoI RGCGCY 1 cut(s) 417
BglI GCCNNNNNGGC 1 cut(s) 344
BglII AGATCT 1 cut(s) 540
BisI GCNGC 1 cut(s) 336
BlpI GCTNAGC 1 cut(s) 424
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 332, 340
Bme18I GGWCC 2 cut(s) 533, 546
BmeT110I CYCGRG 1 cut(s) 301
BmgBI CACGTC 2 cut(s) 388, 490
BmgT120I GGNCC 3 cut(s) 346, 533, 546
BmiI GGNNCC 2 cut(s) 295, 307
BmrFI CCNGG 2 cut(s) 332, 340
BmsI GCATC 2 cut(s) 207, 229
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 340
BsaJI CCNNGG 3 cut(s) 135, 309, 330
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 3 cut(s) 135, 309, 330
BseGI GGATG 3 cut(s) 61, 85, 206
BseRI GAGGAG 2 cut(s) 89, 189
BseSI GKGCMC 2 cut(s) 296, 308
BseXI GCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 494
Bsh1236I CGCG 2 cut(s) 373, 375
BshFI GGCC 1 cut(s) 347
BshNI GGYRCC 2 cut(s) 293, 305
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 362
BsmBI CGTCTC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 530
BsnI GGCC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 3 cut(s) 296, 308, 324
Bsp143I GATC 2 cut(s) 315, 540
Bsp1720I GCTNAGC 1 cut(s) 424
Bsp19I CCATGG 2 cut(s) 135, 309
BspACI CCGC 1 cut(s) 428
BspANI GGCC 1 cut(s) 347
BspFNI CGCG 2 cut(s) 373, 375
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 295, 307
BspT107I GGYRCC 2 cut(s) 293, 305
BssECI CCNNGG 3 cut(s) 135, 309, 330
BssMI GATC 2 cut(s) 315, 540
BssT1I CCWWGG 2 cut(s) 135, 309
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 533, 550
Bst6I CTCTTC 3 cut(s) 138, 351, 356
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 424
BstDSI CCRYGG 2 cut(s) 135, 309
BstF5I GGATG 3 cut(s) 61, 85, 206
BstFNI CGCG 2 cut(s) 373, 375
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 3 cut(s) 375, 416, 443
BstKTI GATC 2 cut(s) 318, 543
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 315, 540
BstMWI GCNNNNNNNGC 2 cut(s) 344, 420
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 2 cut(s) 330, 338
BstSLI GKGCMC 2 cut(s) 296, 308
BstUI CGCG 2 cut(s) 373, 375
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 540
BstXI CCANNNNNNTGG 1 cut(s) 543
BstYI RGATCY 1 cut(s) 540
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 2 cut(s) 135, 309
BtrI CACGTC 2 cut(s) 388, 490
BtsCI GGATG 3 cut(s) 61, 85, 206
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 223
CfoI GCGC 3 cut(s) 375, 416, 443
Cfr13I GGNCC 3 cut(s) 346, 533, 546
CseI GACGC 1 cut(s) 379
Csp6I GTAC 2 cut(s) 4, 32
CviAII CATG 5 cut(s) 41, 136, 224, 310, 445
CviQI GTAC 2 cut(s) 4, 32
DdeI CTNAG 1 cut(s) 424
DpnI GATC 2 cut(s) 317, 542
DpnII GATC 2 cut(s) 315, 540
Eam1104I CTCTTC 3 cut(s) 138, 351, 356
EarI CTCTTC 3 cut(s) 138, 351, 356
Eco130I CCWWGG 2 cut(s) 135, 309
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 2 cut(s) 533, 546
Eco88I CYCGRG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 2 cut(s) 135, 309
EcoT22I ATGCAT 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 135, 309
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 5 cut(s) 44, 139, 227, 313, 448
FatI CATG 5 cut(s) 40, 135, 223, 309, 444
FauI CCCGC 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 3 cut(s) 68, 92, 193
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 2 cut(s) 411, 459
GlaI GCGC 3 cut(s) 374, 415, 442
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 260
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 1 cut(s) 347
HapII CCGG 1 cut(s) 339
HgaI GACGC 1 cut(s) 379
HhaI GCGC 3 cut(s) 375, 416, 443
Hin1II CATG 5 cut(s) 44, 139, 227, 313, 448
Hin6I GCGC 3 cut(s) 373, 414, 441
HinP1I GCGC 3 cut(s) 373, 414, 441
HinfI GANTC 2 cut(s) 44, 148
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 536
Hpy188III TCNNGA 2 cut(s) 224, 544
Hpy8I GTNNAC 1 cut(s) 536
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 1 cut(s) 162
HpyCH4III ACNGT 2 cut(s) 533, 550
HpyCH4IV ACGT 2 cut(s) 387, 489
HpyCH4V TGCA 3 cut(s) 220, 475, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 420
HpyF3I CTNAG 1 cut(s) 424
HpySE526I ACGT 2 cut(s) 387, 489
Hsp92II CATG 5 cut(s) 44, 139, 227, 313, 448
HspAI GCGC 3 cut(s) 373, 414, 441
Kzo9I GATC 2 cut(s) 315, 540
LpnPI CCDG 6 cut(s) 224, 317, 329, 344, 352, 529
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 2 cut(s) 207, 229
MaeI CTAG 2 cut(s) 411, 459
MaeII ACGT 2 cut(s) 387, 489
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 317, 542
MboI GATC 2 cut(s) 315, 540
MboII GAAGA 7 cut(s) 155, 182, 289, 365, 368, 373, 395
MflI RGATCY 1 cut(s) 540
MhlI GDGCHC 3 cut(s) 296, 308, 324
MluCI AATT 1 cut(s) 562
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 9 cut(s) 19, 67, 70, 115, 133, 210, 357, 410, 426
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 3 cut(s) 270, 288, 565
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 332, 340
Mva1269I GAATGC 1 cut(s) 530
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 2 cut(s) 373, 375
MwoI GCNNNNNNNGC 2 cut(s) 344, 420
NciI CCSGG 1 cut(s) 340
NcoI CCATGG 2 cut(s) 135, 309
NdeII GATC 2 cut(s) 315, 540
NlaIII CATG 5 cut(s) 44, 139, 227, 313, 448
NlaIV GGNNCC 2 cut(s) 295, 307
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 311
PagI TCATGA 1 cut(s) 223
PctI GAATGC 1 cut(s) 530
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 295, 307
PspPI GGNCC 3 cut(s) 346, 533, 546
PsuI RGATCY 1 cut(s) 540
RsaI GTAC 2 cut(s) 5, 33
RsaNI GTAC 2 cut(s) 4, 32
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 3 cut(s) 270, 288, 565
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 315, 540
Sau96I GGNCC 3 cut(s) 346, 533, 546
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 2 cut(s) 332, 340
SduI GDGCHC 3 cut(s) 296, 308, 324
SetI ASST 7 cut(s) 30, 163, 240, 390, 402, 425, 492
SfaNI GCATC 2 cut(s) 207, 229
SinI GGWCC 2 cut(s) 533, 546
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 1 cut(s) 562
SsiI CCGC 1 cut(s) 428
SspMI CTAG 2 cut(s) 411, 459
StyD4I CCNGG 2 cut(s) 330, 338
StyI CCWWGG 2 cut(s) 135, 309
TaaI ACNGT 2 cut(s) 533, 550
TaiI ACGT 2 cut(s) 390, 492
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 562
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 3 cut(s) 270, 288, 565
Tru9I TTAA 3 cut(s) 270, 288, 565
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 4 cut(s) 10, 106, 183, 240
TspRI CASTG 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 533, 546
XspI CTAG 2 cut(s) 411, 459
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.