Rroxscaffold_158G00443700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000158
OG0000195
Physical Location & Seq
Reverse (-)
19366 .. 21653
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_158G00443700.1

Sequence Viewer

Length: 1371 bp
ATGGATCGGTGGAACTATGGATGGGAAGACCCGTGGGGATATGAGCAAGAAAGTTTATATGGTGGTGGTTATCAAGCTTATGAGCCTAGGAAGGAATTTGTTGAAGGACTACTAGCTCAATTGCAAGCCTCTCAAGCTCTATTGCAAGCCTCCCAAGCTCGATTGCAAACTTCTCAAGAGATGCTTATACATTCCAATGAGCAACGTAAGGCTAGTCTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAATGGAGCCTAATTCAAGAGAAGAAGTGTATATCGAGCATCTTGAGCAAGAGTCTTTTATGCAAGTTGAAGATGATGATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTGTGAAAGTCTCAATGCAAGTGGGGTGAATGACTACACTTCGGAGGAATTGGTGCAATATTGGAAATCTAAGCTTCCAAATGGAGAAGAGATACTTGAAGATGATTCTGAAGAAGATGATAGCTTATCTAGTGAGGAGGATGCAGAGTTTGAAGTCATATACCATAATCCCTTGTTCATTGAGGAGGAGGATGCGAAGCTTGAAGCCATACATCATAATCCCTTATTCATTGAGGCCGAAATTCCCAAGGAGGAAGATAGGGAGATCCATCATGAGCTTCCCAAGGTGGAGAGTAGAGCATTGAGCACTTATGTTCTTAATGAGAGCATTGGGATCAAGGTACTTTTACCTCCCAATCCACAATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATGGAGCACTTGCACTCACCCTTTCCCATCACTCTCAAGAGGTTCTATCACCTATTGTTCCTATGAGCATCATTTCTAATCCACTTGAGAAGAAGAAGGCAAGGATATTGGCTTCTAGAAGAAAAATCGAGAAGAAGAGGAAGATTAAGAAGCTCCACTTTTGGTCACCAATTGCAATATTCATGGATAGCTCTTGGTCTTGTCTCTATGACACATCGAGGAGTCCCTTAGCCCCAAAAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGACAAGATTGTTCTATATGGACCGGCAATGAAGTCCTTAAACAAAGCGCTCGCTAGGGAGGCAACCCTAGCACATCATCGTTTTCCATTTGAGCCTCTCTACCTTCAGATATGGTGTTCCAAGGAACAGGGGCAGAAACAGGCACAACAGAAACTGCAGAACAGATCATCGTGGAGTGTGTTGGATGTGGTCAAGGCCATGTGCTTAATGGATGACTCTTTTCCTTATTCTTTGAAGTGGTTGTTGTGTGACACATTGCTCAAGGACATTTATGTTCTAAATGGAGTCGATCTTTTCATGAGCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

456

Amino Acids

52.66

Weight (kDa)

4.8

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 12, 640, 722
AcsI RAATTY 2 cut(s) 95, 621
AcuI CTGAAG 2 cut(s) 510, 1151
AfaI GTAC 3 cut(s) 363, 723, 1043
AfeI AGCGCT 1 cut(s) 1110
AfiI CCNNNNNNNGG 1 cut(s) 1031
AgsI TTSAA 7 cut(s) 104, 285, 338, 479, 533, 584, 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
Alw21I GWGCWC 3 cut(s) 689, 799, 1367
Alw26I GTCTC 2 cut(s) 395, 998
AlwI GGATC 3 cut(s) 12, 640, 722
AlwNI CAGNNNCTG 1 cut(s) 1216
Aor51HI AGCGCT 1 cut(s) 1110
AoxI GGCC 2 cut(s) 615, 1257
ApoI RAATTY 2 cut(s) 95, 621
AspA2I CCTAGG 1 cut(s) 86
AspLEI GCGC 1 cut(s) 1111
AspS9I GGNCC 1 cut(s) 1082
AsuHPI GGTGA 6 cut(s) 229, 418, 784, 799, 831, 948
AvaII GGWCC 1 cut(s) 1082
AvrII CCTAGG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 3 cut(s) 689, 799, 1367
BccI CCATC 4 cut(s) 15, 657, 769, 825
BciVI GTATCC 1 cut(s) 1064
BcoDI GTCTC 2 cut(s) 395, 998
BfaI CTAG 8 cut(s) 87, 113, 213, 510, 906, 1116, 1130, 1369
BfmI CTRYAG 1 cut(s) 1217
BfoI RGCGCY 1 cut(s) 1112
BfuI GTATCC 1 cut(s) 1064
BlnI CCTAGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 1082
BmgT120I GGNCC 1 cut(s) 1082
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 5 cut(s) 171, 316, 511, 562, 867
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 1018
BpuEI CTTGAG 7 cut(s) 117, 159, 332, 810, 896, 1066, 1307
BsaJI CCNNGG 5 cut(s) 32, 86, 627, 663, 1182
Bsc4I CCNNNNNNNGG 1 cut(s) 1031
Bse118I RCCGGY 1 cut(s) 1084
Bse3DI GCAATG 2 cut(s) 1095, 1316
BseDI CCNNGG 5 cut(s) 32, 86, 627, 663, 1182
BseGI GGATG 5 cut(s) 26, 526, 577, 1252, 1279
BseLI CCNNNNNNNGG 1 cut(s) 1031
BseMI GCAATG 2 cut(s) 1095, 1316
BseRI GAGGAG 4 cut(s) 530, 578, 581, 1024
BshFI GGCC 2 cut(s) 617, 1259
BsiHKAI GWGCWC 3 cut(s) 689, 799, 1367
BsiSI CCGG 1 cut(s) 1085
BslFI GGGAC 1 cut(s) 999
BslI CCNNNNNNNGG 1 cut(s) 1031
BsmAI GTCTC 2 cut(s) 395, 998
BsmFI GGGAC 1 cut(s) 999
BsnI GGCC 2 cut(s) 617, 1259
Bsp1286I GDGCHC 3 cut(s) 689, 799, 1367
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 5 cut(s) 4, 645, 714, 1226, 1351
BspANI GGCC 2 cut(s) 617, 1259
BspHI TCATGA 2 cut(s) 652, 1359
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 1221
BspPI GGATC 3 cut(s) 12, 640, 722
BsrDI GCAATG 2 cut(s) 1095, 1316
BsrFI RCCGGY 1 cut(s) 1084
BsrGI TGTACA 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 1084
BssECI CCNNGG 5 cut(s) 32, 86, 627, 663, 1182
BssMI GATC 5 cut(s) 4, 645, 714, 1226, 1351
BssT1I CCWWGG 4 cut(s) 86, 627, 663, 1182
Bst6I CTCTTC 2 cut(s) 462, 920
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 126, 147, 1113
BstDEI CTNAG 2 cut(s) 450, 1018
BstDSI CCRYGG 1 cut(s) 32
BstEII GGTNACC 1 cut(s) 954
BstF5I GGATG 5 cut(s) 26, 526, 577, 1252, 1279
BstH2I RGCGCY 1 cut(s) 1112
BstHHI GCGC 1 cut(s) 1111
BstKTI GATC 5 cut(s) 7, 648, 717, 1229, 1354
BstMAI GTCTC 2 cut(s) 395, 998
BstMBI GATC 5 cut(s) 4, 645, 714, 1226, 1351
BstMWI GCNNNNNNNGC 6 cut(s) 134, 155, 218, 313, 1121, 1130
BstPI GGTNACC 1 cut(s) 954
BstSFI CTRYAG 1 cut(s) 1217
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 2 cut(s) 617, 1259
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 5 cut(s) 26, 526, 577, 1252, 1279
Cac8I GCNNGC 3 cut(s) 126, 147, 1113
CaiI CAGNNNCTG 1 cut(s) 1216
CciI TCATGA 2 cut(s) 652, 1359
CfoI GCGC 1 cut(s) 1111
Cfr10I RCCGGY 1 cut(s) 1084
Cfr13I GGNCC 1 cut(s) 1082
Csp6I GTAC 3 cut(s) 362, 722, 1042
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 5 cut(s) 251, 653, 973, 1261, 1360
CviQI GTAC 3 cut(s) 362, 722, 1042
DdeI CTNAG 2 cut(s) 450, 1018
DpnI GATC 5 cut(s) 6, 647, 716, 1228, 1353
DpnII GATC 5 cut(s) 4, 645, 714, 1226, 1351
Eam1104I CTCTTC 2 cut(s) 462, 920
EarI CTCTTC 2 cut(s) 462, 920
Eco130I CCWWGG 4 cut(s) 86, 627, 663, 1182
Eco47I GGWCC 1 cut(s) 1082
Eco47III AGCGCT 1 cut(s) 1110
Eco57I CTGAAG 2 cut(s) 510, 1151
Eco91I GGTNACC 1 cut(s) 954
EcoO65I GGTNACC 1 cut(s) 954
EcoT14I CCWWGG 4 cut(s) 86, 627, 663, 1182
ErhI CCWWGG 4 cut(s) 86, 627, 663, 1182
FaeI CATG 5 cut(s) 254, 656, 976, 1264, 1363
FalI AAGNNNNNCTT 6 cut(s) 168, 200, 459, 491, 932, 964
FaqI GGGAC 1 cut(s) 999
FatI CATG 5 cut(s) 250, 652, 972, 1260, 1359
FokI GGATG 5 cut(s) 33, 533, 584, 1259, 1286
FspBI CTAG 8 cut(s) 87, 113, 213, 510, 906, 1116, 1130, 1369
GlaI GCGC 1 cut(s) 1110
HaeII RGCGCY 1 cut(s) 1112
HaeIII GGCC 2 cut(s) 617, 1259
HapII CCGG 1 cut(s) 1085
HhaI GCGC 1 cut(s) 1111
Hin1II CATG 5 cut(s) 254, 656, 976, 1264, 1363
Hin6I GCGC 1 cut(s) 1109
HinP1I GCGC 1 cut(s) 1109
HindIII AAGCTT 3 cut(s) 75, 452, 578
HinfI GANTC 6 cut(s) 254, 320, 485, 1012, 1277, 1347
HpaII CCGG 1 cut(s) 1085
HphI GGTGA 6 cut(s) 229, 418, 784, 799, 831, 948
Hpy188I TCNGA 3 cut(s) 424, 490, 1170
Hpy188III TCNNGA 8 cut(s) 176, 285, 311, 653, 827, 906, 919, 1360
HpyAV CCTTC 5 cut(s) 85, 98, 244, 880, 1175
HpyCH4IV ACGT 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 155, 218, 313, 1121, 1130
HpyF3I CTNAG 2 cut(s) 450, 1018
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 5 cut(s) 254, 656, 976, 1264, 1363
HspAI GCGC 1 cut(s) 1109
Kzo9I GATC 5 cut(s) 4, 645, 714, 1226, 1351
LmnI GCTCC 3 cut(s) 274, 794, 948
LpnPI CCDG 3 cut(s) 1098, 1175, 1187
LweI GCATC 5 cut(s) 171, 316, 511, 562, 867
MaeI CTAG 8 cut(s) 87, 113, 213, 510, 906, 1116, 1130, 1369
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 2 cut(s) 954, 1310
MalI GATC 5 cut(s) 6, 647, 716, 1228, 1353
MboI GATC 5 cut(s) 4, 645, 714, 1226, 1351
MfeI CAATTG 2 cut(s) 119, 960
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 3 cut(s) 689, 799, 1367
MluCI AATT 7 cut(s) 95, 119, 280, 428, 621, 743, 960
MlyI GAGTC 4 cut(s) 329, 1021, 1271, 1356
MmeI TCCRAC 1 cut(s) 1224
MseI TTAA 5 cut(s) 699, 746, 936, 1100, 1268
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 1 cut(s) 1085
MunI CAATTG 2 cut(s) 119, 960
MwoI GCNNNNNNNGC 6 cut(s) 134, 155, 218, 313, 1121, 1130
NdeII GATC 5 cut(s) 4, 645, 714, 1226, 1351
NlaIII CATG 5 cut(s) 254, 656, 976, 1264, 1363
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 2 cut(s) 954, 1310
PagI TCATGA 2 cut(s) 652, 1359
PfeI GAWTC 2 cut(s) 254, 485
PleI GAGTC 4 cut(s) 328, 1020, 1271, 1355
PpsI GAGTC 4 cut(s) 328, 1020, 1271, 1355
PspEI GGTNACC 1 cut(s) 954
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 1082
PstI CTGCAG 1 cut(s) 1221
PstNI CAGNNNCTG 1 cut(s) 1216
PsuI RGATCY 1 cut(s) 645
RsaI GTAC 3 cut(s) 363, 723, 1043
RsaNI GTAC 3 cut(s) 362, 722, 1042
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 5 cut(s) 699, 746, 936, 1100, 1268
Sau3AI GATC 5 cut(s) 4, 645, 714, 1226, 1351
Sau96I GGNCC 1 cut(s) 1082
SchI GAGTC 4 cut(s) 329, 1021, 1271, 1356
SduI GDGCHC 3 cut(s) 689, 799, 1367
SfaNI GCATC 5 cut(s) 171, 316, 511, 562, 867
SfcI CTRYAG 1 cut(s) 1217
SinI GGWCC 1 cut(s) 1082
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 7 cut(s) 132, 174, 311, 825, 875, 1045, 1322
SmoI CTYRAG 7 cut(s) 132, 174, 311, 825, 875, 1045, 1322
Sse9I AATT 7 cut(s) 95, 119, 280, 428, 621, 743, 960
SspI AATATT 2 cut(s) 440, 969
SspMI CTAG 8 cut(s) 87, 113, 213, 510, 906, 1116, 1130, 1369
StyI CCWWGG 4 cut(s) 86, 627, 663, 1182
TaiI ACGT 1 cut(s) 208
TaqI TCGA 5 cut(s) 160, 303, 918, 1007, 1350
TasI AATT 7 cut(s) 95, 119, 280, 428, 621, 743, 960
TatI WGTACW 1 cut(s) 361
TfiI GAWTC 2 cut(s) 254, 485
Tru1I TTAA 5 cut(s) 699, 746, 936, 1100, 1268
Tru9I TTAA 5 cut(s) 699, 746, 936, 1100, 1268
TseFI GTSAC 2 cut(s) 954, 1310
Tsp45I GTSAC 2 cut(s) 954, 1310
TspDTI ATGAA 6 cut(s) 267, 547, 598, 961, 1106, 1348
VpaK11BI GGWCC 1 cut(s) 1082
XapI RAATTY 2 cut(s) 95, 621
XbaI TCTAGA 1 cut(s) 905
XcmI CCANNNNNNNNNTGG 2 cut(s) 1032, 1267
XmaJI CCTAGG 1 cut(s) 86
XspI CTAG 8 cut(s) 87, 113, 213, 510, 906, 1116, 1130, 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.