Rroxscaffold_4G00324230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000195
Physical Location & Seq
Forward (+)
55498555 .. 55502243
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324230.1

Sequence Viewer

Length: 1044 bp
ATGGATCGAAGGAATTATGGATGGGATGACCCAATGGGATACGAGCAACCTCCTCAAGATCAAGCTTATGCACCTTCAAAGCCATCCATCGAAGAATTGTTTGCTCAATTCAAAGCTATAAGTGAGAGTGTAGATCCAATCATGGAGCAATTCAAGGCTAGCCTACTTCAAGAGCAACCTCCCACCACTTTATATTTGCAAGAGCCTTTCTTTAATCAAGTGGAGCCTATTTCAAGAGAAGAGGTACATATCAAGCATCTTGAGCAAGAGTCGTTGCAAATTGATGATTATAGTGATGTTGATGTACAAGAAAGTGGGGTGAAAGACTACACTTCGGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCCTAATGGAGGGGAGATATTTGAAGATGATTCCGATGAAGAGGATGTCTTTTCTAGTGAGAATGATGTGGAATTCAAAGTCATACACCATAATCCTTTGTTCATTGAGGAGGATGCGGAGCTTGAAGTCATACATCATAATCCATTATTCATTGAGGTTGATTTTTCCATGGAGGAAGAGAGTCCTTCACTACCTTGTGATGAAGAAGTTGAAGAACCAAGGACTTTCTCTCCTCCCACATCCAAAGAGATCCATCATGAGTTTCCCAATGTGGATTGTAGAATATTGAGCACTTATGTTCTTAATGAGAGGATTGGGATCAAGATACTTTTACCTCTCAATGATCCCAATCCACCCTTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATAGAGCACTTGCACTCACCATTTCCCATCACTCTCAAGAGCTTCTACCCCCTATTGTTCCTATGTGCATCATTTCTACACCACTTGAGCAGGAGAAGGCAAGGATAGCTCCTAGAAGAAAAATTGAGAAGAAGAGGAAGATTAAGAAGCTATACTTTTGGCACCCAAATGGAGTATTCTTATGTAGCTCTTGGTCTTGTCTCTATGACACATCGAAGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

40.3

Weight (kDa)

4.63

Isoelectric Point (pI)

62.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 933
AciI CCGC 1 cut(s) 485
AclWI GGATC 5 cut(s) 12, 128, 613, 695, 707
AcsI RAATTY 1 cut(s) 440
AfaI GTAC 3 cut(s) 246, 306, 1023
AfiI CCNNNNNNNGG 2 cut(s) 377, 731
AflII CTTAAG 1 cut(s) 727
AgsI TTSAA 9 cut(s) 78, 112, 154, 170, 234, 392, 445, 494, 581
AluBI AGCT 8 cut(s) 65, 116, 367, 490, 814, 881, 922, 960
AluI AGCT 8 cut(s) 65, 116, 367, 490, 814, 881, 922, 960
Alw21I GWGCWC 2 cut(s) 662, 781
Alw26I GTCTC 1 cut(s) 977
AlwI GGATC 5 cut(s) 12, 128, 613, 695, 707
ApoI RAATTY 1 cut(s) 440
AsuHPI GGTGA 3 cut(s) 331, 766, 781
AsuNHI GCTAGC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 933
Bbv12I GWGCWC 2 cut(s) 662, 781
BccI CCATC 6 cut(s) 15, 91, 95, 630, 751, 807
BciVI GTATCC 2 cut(s) 32, 1044
BcoDI GTCTC 1 cut(s) 977
BfaI CTAG 3 cut(s) 159, 423, 885
BfrI CTTAAG 1 cut(s) 727
BfuI GTATCC 2 cut(s) 32, 1044
BmiI GGNNCC 2 cut(s) 225, 935
BmsI GCATC 3 cut(s) 265, 472, 849
BmtI GCTAGC 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 997
BpuEI CTTGAG 4 cut(s) 39, 281, 792, 878
BsaBI GATNNNNATC 2 cut(s) 686, 717
BsaJI CCNNGG 2 cut(s) 537, 587
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 731
Bse8I GATNNNNATC 2 cut(s) 686, 717
BseDI CCNNGG 2 cut(s) 537, 587
BseGI GGATG 6 cut(s) 26, 31, 83, 418, 487, 608
BseJI GATNNNNATC 2 cut(s) 686, 717
BseLI CCNNNNNNNGG 2 cut(s) 377, 731
BseRI GAGGAG 3 cut(s) 42, 491, 591
BshNI GGYRCC 1 cut(s) 933
BsiHKAI GWGCWC 2 cut(s) 662, 781
BslFI GGGAC 1 cut(s) 978
BslI CCNNNNNNNGG 2 cut(s) 377, 731
BsmAI GTCTC 1 cut(s) 977
BsmFI GGGAC 1 cut(s) 978
Bsp1286I GDGCHC 2 cut(s) 662, 781
Bsp1407I TGTACA 1 cut(s) 304
Bsp143I GATC 6 cut(s) 4, 58, 133, 618, 687, 712
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 1 cut(s) 485
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 225, 935
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 5 cut(s) 12, 128, 613, 695, 707
BspT107I GGYRCC 1 cut(s) 933
BspTI CTTAAG 1 cut(s) 727
BsrGI TGTACA 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 537, 587
BssMI GATC 6 cut(s) 4, 58, 133, 618, 687, 712
BssT1I CCWWGG 2 cut(s) 537, 587
Bst6I CTCTTC 5 cut(s) 234, 402, 540, 899, 983
BstAFI CTTAAG 1 cut(s) 727
BstAUI TGTACA 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 363, 997
BstDSI CCRYGG 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 375
BstF5I GGATG 6 cut(s) 26, 31, 83, 418, 487, 608
BstKTI GATC 6 cut(s) 7, 61, 136, 621, 690, 715
BstMAI GTCTC 1 cut(s) 977
BstMBI GATC 6 cut(s) 4, 58, 133, 618, 687, 712
BstMWI GCNNNNNNNGC 2 cut(s) 262, 878
BstX2I RGATCY 2 cut(s) 133, 618
BstYI RGATCY 2 cut(s) 133, 618
BsuI GTATCC 2 cut(s) 32, 1044
BtgI CCRYGG 1 cut(s) 537
BtsCI GGATG 6 cut(s) 26, 31, 83, 418, 487, 608
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 625
Csp6I GTAC 3 cut(s) 245, 305, 1022
CviAII CATG 3 cut(s) 142, 538, 626
CviQI GTAC 3 cut(s) 245, 305, 1022
DdeI CTNAG 2 cut(s) 363, 997
DpnI GATC 6 cut(s) 6, 60, 135, 620, 689, 714
DpnII GATC 6 cut(s) 4, 58, 133, 618, 687, 712
Eam1104I CTCTTC 5 cut(s) 234, 402, 540, 899, 983
EarI CTCTTC 5 cut(s) 234, 402, 540, 899, 983
Eco130I CCWWGG 2 cut(s) 537, 587
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoRI GAATTC 1 cut(s) 440
EcoT14I CCWWGG 2 cut(s) 537, 587
ErhI CCWWGG 2 cut(s) 537, 587
FaeI CATG 3 cut(s) 145, 541, 629
FalI AAGNNNNNCTT 4 cut(s) 911, 943, 980, 1012
FaqI GGGAC 1 cut(s) 978
FatI CATG 3 cut(s) 141, 537, 625
FokI GGATG 6 cut(s) 33, 38, 70, 425, 494, 595
FspBI CTAG 3 cut(s) 159, 423, 885
Hin1II CATG 3 cut(s) 145, 541, 629
HindIII AAGCTT 2 cut(s) 63, 365
HinfI GANTC 4 cut(s) 269, 398, 550, 991
HphI GGTGA 3 cut(s) 331, 766, 781
Hpy188I TCNGA 2 cut(s) 337, 403
Hpy188III TCNNGA 7 cut(s) 56, 170, 234, 260, 626, 691, 809
HpyAV CCTTC 4 cut(s) 3, 84, 564, 862
HpyCH4V TGCA 6 cut(s) 71, 199, 277, 349, 785, 840
HpyF10VI GCNNNNNNNGC 2 cut(s) 262, 878
HpyF3I CTNAG 2 cut(s) 363, 997
Hsp92II CATG 3 cut(s) 145, 541, 629
Kzo9I GATC 6 cut(s) 4, 58, 133, 618, 687, 712
LmnI GCTCC 4 cut(s) 145, 223, 487, 886
LpnPI CCDG 1 cut(s) 848
LweI GCATC 3 cut(s) 265, 472, 849
MaeI CTAG 3 cut(s) 159, 423, 885
MalI GATC 6 cut(s) 6, 60, 135, 620, 689, 714
MboI GATC 6 cut(s) 4, 58, 133, 618, 687, 712
MflI RGATCY 2 cut(s) 133, 618
MhlI GDGCHC 2 cut(s) 662, 781
MluCI AATT 7 cut(s) 13, 95, 107, 149, 279, 440, 894
MlyI GAGTC 3 cut(s) 278, 559, 1000
MseI TTAA 4 cut(s) 213, 672, 728, 915
MslI CAYNNNNRTG 1 cut(s) 939
MspCI CTTAAG 1 cut(s) 727
MwoI GCNNNNNNNGC 2 cut(s) 262, 878
NcoI CCATGG 1 cut(s) 537
NdeII GATC 6 cut(s) 4, 58, 133, 618, 687, 712
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 3 cut(s) 145, 541, 629
NlaIV GGNNCC 2 cut(s) 225, 935
PagI TCATGA 1 cut(s) 625
PfeI GAWTC 1 cut(s) 398
PleI GAGTC 3 cut(s) 277, 558, 999
PpsI GAGTC 3 cut(s) 277, 558, 999
PspN4I GGNNCC 2 cut(s) 225, 935
PsuI RGATCY 2 cut(s) 133, 618
RsaI GTAC 3 cut(s) 246, 306, 1023
RsaNI GTAC 3 cut(s) 245, 305, 1022
RseI CAYNNNNRTG 1 cut(s) 939
SaqAI TTAA 4 cut(s) 213, 672, 728, 915
Sau3AI GATC 6 cut(s) 4, 58, 133, 618, 687, 712
SchI GAGTC 3 cut(s) 278, 559, 1000
SduI GDGCHC 2 cut(s) 662, 781
SfaNI GCATC 3 cut(s) 265, 472, 849
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 6 cut(s) 54, 260, 727, 807, 857, 1025
SmoI CTYRAG 6 cut(s) 54, 260, 727, 807, 857, 1025
Sse9I AATT 7 cut(s) 13, 95, 107, 149, 279, 440, 894
SsiI CCGC 1 cut(s) 485
SspI AATATT 2 cut(s) 353, 654
SspMI CTAG 3 cut(s) 159, 423, 885
StyI CCWWGG 2 cut(s) 537, 587
TaqI TCGA 3 cut(s) 7, 90, 986
TasI AATT 7 cut(s) 13, 95, 107, 149, 279, 440, 894
TatI WGTACW 1 cut(s) 304
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 4 cut(s) 213, 672, 728, 915
Tru9I TTAA 4 cut(s) 213, 672, 728, 915
TspDTI ATGAA 4 cut(s) 420, 460, 508, 585
Vha464I CTTAAG 1 cut(s) 727
XagI CCTNNNNNAGG 1 cut(s) 375
XapI RAATTY 1 cut(s) 440
XspI CTAG 3 cut(s) 159, 423, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.