Rmu_sc0020577.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020577.1
OG0000195
Physical Location & Seq
Reverse (-)
546 .. 1364
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020577.1_g000001.1.cds

Sequence Viewer

Length: 819 bp
atggttcccgaagcatattctcatgagcaagtgtatgagtctaggaggccttctcttgaagaattgctagctcaattgcaagcgtcccacgctcaattgcaagcttctcaagaaatgcttacatattccaatgagcaacttgaggctagtcttgcacaagagcaacccttcaccatttatgagcatgaatctttctttgaccaagtggagcctatttcaagagaagaagtttatatcgagcatcttaagcaagagtcttttatgcaagttgaaaatgatgatagtgatgttgatgtacaagaaattgatcttggttatgaaagtttcaatgcaagtgaggtgagagactacacttcagaggaatgggtacaatattggaaatctaagcttctaaatgaaggtgagatatttgaagatgattccgaagaagatgatggcttatctagtaaggaggatgcggagtttgaagtcatacaccataatcccttattcattgaggaggatgcagtgcttcaagttatataccataatcccttattcattgaggctaatattcccatggaggaagatagtccttcaatactttgtgatgatgaagaaattgaagagccaaggattttctctcctcgtacatctaaagagatccatcatgagcttcctaaggtggagagtaggacattgagcacttatgttcttaatggaaagtttgagattaaggcatttttatctctcaatccaccattaagtggtcaatgtttctatagtgaggtgatggattggaaaggaaaacttacactcaaccttttcagtcactcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

31.69

Weight (kDa)

4.24

Isoelectric Point (pI)

64.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 746
AciI CCGC 1 cut(s) 458
AclWI GGATC 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 297, 369, 631
AfiI CCNNNNNNNGG 1 cut(s) 746
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 9 cut(s) 59, 219, 272, 328, 413, 467, 515, 579, 605
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 4 cut(s) 71, 104, 388, 655
AluI AGCT 4 cut(s) 71, 104, 388, 655
Alw21I GWGCWC 1 cut(s) 686
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 637
AoxI GGCC 1 cut(s) 47
AsuHPI GGTGA 4 cut(s) 163, 352, 413, 781
AsuNHI GCTAGC 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 686
BccI CCATC 3 cut(s) 428, 654, 766
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 4 cut(s) 42, 68, 147, 444
BfmI CTRYAG 1 cut(s) 760
BfrI CTTAAG 1 cut(s) 245
BmiI GGNNCC 2 cut(s) 6, 210
BmsI GCATC 3 cut(s) 250, 445, 493
BmtI GCTAGC 1 cut(s) 71
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpuEI CTTGAG 2 cut(s) 93, 161
BsaJI CCNNGG 2 cut(s) 558, 611
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse21I CCTNAGG 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 558, 611
BseGI GGATG 2 cut(s) 460, 508
BseLI CCNNNNNNNGG 1 cut(s) 746
BseRI GAGGAG 2 cut(s) 512, 615
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 686
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 746
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 686
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 2 cut(s) 307, 642
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 1 cut(s) 458
BspANI GGCC 1 cut(s) 49
BspHI TCATGA 2 cut(s) 22, 649
BspLI GGNNCC 2 cut(s) 6, 210
BspOI GCTAGC 1 cut(s) 71
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 600
BspTI CTTAAG 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 558, 611
BssMI GATC 2 cut(s) 307, 642
BssT1I CCWWGG 2 cut(s) 558, 611
Bst6I CTCTTC 1 cut(s) 600
BstAFI CTTAAG 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 295
BstC8I GCNNGC 3 cut(s) 69, 81, 102
BstDEI CTNAG 2 cut(s) 384, 660
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 2 cut(s) 460, 508
BstKTI GATC 2 cut(s) 310, 645
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 307, 642
BstMWI GCNNNNNNNGC 3 cut(s) 89, 152, 247
BstSFI CTRYAG 1 cut(s) 760
BstX2I RGATCY 1 cut(s) 642
BstYI RGATCY 1 cut(s) 642
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 2 cut(s) 460, 508
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 3 cut(s) 69, 81, 102
CciI TCATGA 2 cut(s) 22, 649
CseI GACGC 1 cut(s) 72
Csp6I GTAC 3 cut(s) 296, 368, 630
CviAII CATG 4 cut(s) 23, 185, 559, 650
CviQI GTAC 3 cut(s) 296, 368, 630
DdeI CTNAG 2 cut(s) 384, 660
DpnI GATC 2 cut(s) 309, 644
DpnII GATC 2 cut(s) 307, 642
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Eco130I CCWWGG 2 cut(s) 558, 611
Eco147I AGGCCT 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 660
EcoT14I CCWWGG 2 cut(s) 558, 611
ErhI CCWWGG 2 cut(s) 558, 611
FaeI CATG 4 cut(s) 26, 188, 562, 653
FalI AAGNNNNNCTT 4 cut(s) 102, 134, 774, 806
FaqI GGGAC 1 cut(s) 70
FatI CATG 4 cut(s) 22, 184, 558, 649
FokI GGATG 2 cut(s) 467, 515
FspBI CTAG 4 cut(s) 42, 68, 147, 444
HaeIII GGCC 1 cut(s) 49
HgaI GACGC 1 cut(s) 72
Hin1II CATG 4 cut(s) 26, 188, 562, 653
HindIII AAGCTT 2 cut(s) 102, 386
HinfI GANTC 4 cut(s) 38, 188, 254, 419
HphI GGTGA 4 cut(s) 163, 352, 413, 781
Hpy188I TCNGA 2 cut(s) 358, 424
Hpy188III TCNNGA 6 cut(s) 8, 23, 56, 110, 219, 650
HpyAV CCTTC 4 cut(s) 60, 178, 392, 585
HpyCH4V TGCA 6 cut(s) 79, 100, 155, 265, 332, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 152, 247
HpyF3I CTNAG 2 cut(s) 384, 660
Hsp92II CATG 4 cut(s) 26, 188, 562, 653
Kzo9I GATC 2 cut(s) 307, 642
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 1 cut(s) 208
LweI GCATC 3 cut(s) 250, 445, 493
MaeI CTAG 4 cut(s) 42, 68, 147, 444
MaeIII GTNAC 1 cut(s) 809
MalI GATC 2 cut(s) 309, 644
MboI GATC 2 cut(s) 307, 642
MboII GAAGA 8 cut(s) 71, 236, 425, 437, 440, 578, 608, 617
MfeI CAATTG 2 cut(s) 74, 95
MflI RGATCY 1 cut(s) 642
MhlI GDGCHC 1 cut(s) 686
MluCI AATT 5 cut(s) 62, 74, 95, 303, 600
MlyI GAGTC 2 cut(s) 47, 263
MseI TTAA 5 cut(s) 246, 696, 714, 743, 817
MspCI CTTAAG 1 cut(s) 245
MunI CAATTG 2 cut(s) 74, 95
MwoI GCNNNNNNNGC 3 cut(s) 89, 152, 247
NcoI CCATGG 1 cut(s) 558
NdeII GATC 2 cut(s) 307, 642
NheI GCTAGC 1 cut(s) 67
NlaIII CATG 4 cut(s) 26, 188, 562, 653
NlaIV GGNNCC 2 cut(s) 6, 210
NmuCI GTSAC 1 cut(s) 809
PagI TCATGA 2 cut(s) 22, 649
PceI AGGCCT 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 600
PfeI GAWTC 2 cut(s) 188, 419
PflMI CCANNNNNTGG 1 cut(s) 746
PleI GAGTC 2 cut(s) 46, 262
PpsI GAGTC 2 cut(s) 46, 262
PspN4I GGNNCC 2 cut(s) 6, 210
PsuI RGATCY 1 cut(s) 642
RsaI GTAC 3 cut(s) 297, 369, 631
RsaNI GTAC 3 cut(s) 296, 368, 630
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 5 cut(s) 246, 696, 714, 743, 817
Sau3AI GATC 2 cut(s) 307, 642
SchI GAGTC 2 cut(s) 47, 263
SduI GDGCHC 1 cut(s) 686
SetI ASST 9 cut(s) 73, 106, 342, 390, 403, 657, 666, 771, 804
SfaNI GCATC 3 cut(s) 250, 445, 493
SfcI CTRYAG 1 cut(s) 760
SmlI CTYRAG 3 cut(s) 108, 140, 245
SmoI CTYRAG 3 cut(s) 108, 140, 245
Sse9I AATT 5 cut(s) 62, 74, 95, 303, 600
SseBI AGGCCT 1 cut(s) 49
SsiI CCGC 1 cut(s) 458
SspI AATATT 2 cut(s) 374, 553
SspMI CTAG 4 cut(s) 42, 68, 147, 444
StuI AGGCCT 1 cut(s) 49
StyI CCWWGG 2 cut(s) 558, 611
TaqI TCGA 1 cut(s) 237
TasI AATT 5 cut(s) 62, 74, 95, 303, 600
TatI WGTACW 1 cut(s) 295
TfiI GAWTC 2 cut(s) 188, 419
Tru1I TTAA 5 cut(s) 246, 696, 714, 743, 817
Tru9I TTAA 5 cut(s) 246, 696, 714, 743, 817
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 1 cut(s) 809
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 6 cut(s) 201, 333, 411, 481, 529, 609
TspRI CASTG 1 cut(s) 513
Van91I CCANNNNNTGG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 245
XspI CTAG 4 cut(s) 42, 68, 147, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.