Rroxscaffold_4G00316420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000195
Physical Location & Seq
Forward (+)
41282833 .. 41283759
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316420.1

Sequence Viewer

Length: 927 bp
ATGGATCAATGGAGCTATGGATGGGAAGACCCAAGGGGATATGAGCAAGAATGTTTCTATGGTGGAGGTCATCATGAGTGGAATTCTCATGCGGTGGGTTCTATGTCCTCTTGCCATGAAACTTGTGCTTTGTGTAATTCTCCGTGGCATTCACGTTTTGAGTGCTCTATGAGATTTGAATGCTCAAATTTTATGCAAGAGCATGAGTACATGTATCAAGAGACATTTGTACCCGACGCATATCCACAAAATGAAGCTAATGAGCCTAGGAAGGAATTTGTTAAAGGACTACTAGCTCAATTGCAAGCCTCCCGAGATCTTTTACAAGCCTCTCAAGCTAAAATTTCACAAGAGACCATGGTTCTTGAAGCATATCCTCATGAGCAAGCGTATGAGTCTAGGAAGCCTTCTCTTGAAGAATTGCTAGCTCAATTGCAAGCGTCCCAATCTCGATTGCAAGCTTCTCAAGAAATACTTATACATACCAATGATCAACTTGAGACTAGTCTTGCACAAGAGCCACCCTTCATCATTTATGAGCATGAATCTTTCTTTGACCAAGTGGAGCCTATTTCAAGAGAAGAAGTGTATATCGAGCATCTTGAGCAAGAATCCTTTATGCAAGTTGAAAATGATGACAGTGATGTTGATGTACAAGAAATTGAGCTTGGTTATGAAAGTTTTAATGCAAGTGAGGTGAGAGACTACACTTTAGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCGAAATGGAGGGGAGATATTATTTGAAGATGATTCCGAAGAAGAGGATGTCTTGTCTAGTGAGGAGGATGCGGAGCTTGAAGTTATACACCATAATTGTAACGTCCCGAACCTAAACTCACTGTTTACTAGTCATTTAGACGGTAAACGACCTTTACTTTCACTTTTACTTTCGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

35.86

Weight (kDa)

4.34

Isoelectric Point (pI)

64.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 92, 818
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 4 cut(s) 82, 187, 275, 342
AfaI GTAC 3 cut(s) 209, 231, 654
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 7 cut(s) 179, 368, 416, 576, 629, 773, 827
AhlI ACTAGT 2 cut(s) 503, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 651, 683
AluBI AGCT 9 cut(s) 15, 257, 296, 338, 428, 461, 667, 745, 823
AluI AGCT 9 cut(s) 15, 257, 296, 338, 428, 461, 667, 745, 823
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 4 cut(s) 215, 347, 494, 696
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 312
ApoI RAATTY 4 cut(s) 82, 187, 275, 342
AspA2I CCTAGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 709
AsuII TTCGAA 1 cut(s) 748
AsuNHI GCTAGC 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 312
AvrII CCTAGG 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 1 cut(s) 15
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 4 cut(s) 215, 347, 494, 696
BcuI ACTAGT 2 cut(s) 503, 875
BfaI CTAG 7 cut(s) 267, 293, 399, 425, 504, 804, 876
BglII AGATCT 1 cut(s) 316
BlnI CCTAGG 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 567
BmsI GCATC 2 cut(s) 607, 805
BmtI GCTAGC 1 cut(s) 428
BpiI GAAGAC 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 748
BpuEI CTTGAG 4 cut(s) 318, 450, 518, 623
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 32, 143, 266, 357
BseDI CCNNGG 4 cut(s) 32, 143, 266, 357
BseGI GGATG 3 cut(s) 26, 799, 820
BseRI GAGGAG 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 312
BslFI GGGAC 2 cut(s) 427, 836
BsmAI GTCTC 4 cut(s) 215, 347, 494, 696
BsmFI GGGAC 2 cut(s) 427, 836
BsmI GAATGC 2 cut(s) 148, 185
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 748
Bsp1286I GDGCHC 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 652
Bsp143I GATC 3 cut(s) 4, 316, 490
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 2 cut(s) 92, 818
BspHI TCATGA 2 cut(s) 73, 379
BspLI GGNNCC 1 cut(s) 567
BspOI GCTAGC 1 cut(s) 428
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 748
BspTNI GGTCTC 1 cut(s) 347
BsrGI TGTACA 1 cut(s) 652
BssECI CCNNGG 4 cut(s) 32, 143, 266, 357
BssMI GATC 3 cut(s) 4, 316, 490
BssT1I CCWWGG 3 cut(s) 32, 266, 357
Bst4CI ACNGT 3 cut(s) 641, 870, 890
Bst6I CTCTTC 1 cut(s) 783
BstAUI TGTACA 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 748
BstC8I GCNNGC 5 cut(s) 306, 387, 426, 438, 459
BstDEI CTNAG 1 cut(s) 741
BstDSI CCRYGG 2 cut(s) 143, 357
BstF5I GGATG 3 cut(s) 26, 799, 820
BstKTI GATC 3 cut(s) 7, 319, 493
BstMAI GTCTC 4 cut(s) 215, 347, 494, 696
BstMBI GATC 3 cut(s) 4, 316, 490
BstMWI GCNNNNNNNGC 2 cut(s) 335, 604
BstNSI RCATGY 1 cut(s) 214
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 316
BstYI RGATCY 1 cut(s) 316
BtgI CCRYGG 2 cut(s) 143, 357
BtsCI GGATG 3 cut(s) 26, 799, 820
BtsIMutI CAGTG 2 cut(s) 646, 866
Cac8I GCNNGC 5 cut(s) 306, 387, 426, 438, 459
CciI TCATGA 2 cut(s) 73, 379
CseI GACGC 2 cut(s) 245, 429
Csp6I GTAC 3 cut(s) 208, 230, 653
CviAII CATG 8 cut(s) 74, 89, 116, 203, 211, 358, 380, 542
CviQI GTAC 3 cut(s) 208, 230, 653
DdeI CTNAG 1 cut(s) 741
DpnI GATC 3 cut(s) 6, 318, 492
DpnII GATC 3 cut(s) 4, 316, 490
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
Eco130I CCWWGG 3 cut(s) 32, 266, 357
Eco31I GGTCTC 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 312
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 3 cut(s) 32, 266, 357
ErhI CCWWGG 3 cut(s) 32, 266, 357
FaeI CATG 8 cut(s) 77, 92, 119, 206, 214, 361, 383, 545
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 2 cut(s) 427, 836
FatI CATG 8 cut(s) 73, 88, 115, 202, 210, 357, 379, 541
FbaI TGATCA 1 cut(s) 490
FokI GGATG 3 cut(s) 33, 806, 827
FspBI CTAG 7 cut(s) 267, 293, 399, 425, 504, 804, 876
HgaI GACGC 2 cut(s) 245, 429
Hin1II CATG 8 cut(s) 77, 92, 119, 206, 214, 361, 383, 545
HindIII AAGCTT 2 cut(s) 459, 743
HinfI GANTC 4 cut(s) 395, 545, 611, 779
HphI GGTGA 1 cut(s) 709
Hpy166II GTNNAC 2 cut(s) 873, 893
Hpy188I TCNGA 1 cut(s) 784
Hpy8I GTNNAC 2 cut(s) 873, 893
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 265, 417, 535
HpyCH4III ACNGT 3 cut(s) 641, 870, 890
HpyCH4IV ACGT 2 cut(s) 154, 849
HpyCH4V TGCA 8 cut(s) 196, 304, 436, 457, 512, 622, 689, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 604
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 2 cut(s) 154, 849
Hsp92II CATG 8 cut(s) 77, 92, 119, 206, 214, 361, 383, 545
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 3 cut(s) 4, 316, 490
LmnI GCTCC 3 cut(s) 12, 565, 820
LweI GCATC 2 cut(s) 607, 805
MaeI CTAG 7 cut(s) 267, 293, 399, 425, 504, 804, 876
MaeII ACGT 2 cut(s) 154, 849
MaeIII GTNAC 1 cut(s) 845
MalI GATC 3 cut(s) 6, 318, 492
MboI GATC 3 cut(s) 4, 316, 490
MboII GAAGA 6 cut(s) 38, 428, 593, 785, 797, 800
MfeI CAATTG 2 cut(s) 299, 431
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 167
MlyI GAGTC 1 cut(s) 404
MseI TTAA 2 cut(s) 282, 684
MslI CAYNNNNRTG 1 cut(s) 486
MunI CAATTG 2 cut(s) 299, 431
Mva1269I GAATGC 2 cut(s) 148, 185
MwoI GCNNNNNNNGC 2 cut(s) 335, 604
NcoI CCATGG 1 cut(s) 357
NdeII GATC 3 cut(s) 4, 316, 490
NheI GCTAGC 1 cut(s) 424
NlaIII CATG 8 cut(s) 77, 92, 119, 206, 214, 361, 383, 545
NlaIV GGNNCC 1 cut(s) 567
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 748
PagI TCATGA 2 cut(s) 73, 379
PciI ACATGT 1 cut(s) 210
PctI GAATGC 2 cut(s) 148, 185
PfeI GAWTC 3 cut(s) 545, 611, 779
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PscI ACATGT 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 567
PsuI RGATCY 1 cut(s) 316
RsaI GTAC 3 cut(s) 209, 231, 654
RsaNI GTAC 3 cut(s) 208, 230, 653
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 2 cut(s) 282, 684
Sau3AI GATC 3 cut(s) 4, 316, 490
SchI GAGTC 1 cut(s) 404
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 2 cut(s) 607, 805
SfuI TTCGAA 1 cut(s) 748
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 4 cut(s) 333, 465, 497, 602
SmoI CTYRAG 4 cut(s) 333, 465, 497, 602
SpeI ACTAGT 2 cut(s) 503, 875
SsiI CCGC 2 cut(s) 92, 818
SspI AATATT 1 cut(s) 731
SspMI CTAG 7 cut(s) 267, 293, 399, 425, 504, 804, 876
StyI CCWWGG 3 cut(s) 32, 266, 357
TaaI ACNGT 3 cut(s) 641, 870, 890
TaiI ACGT 2 cut(s) 157, 852
TaqI TCGA 3 cut(s) 451, 594, 748
TatI WGTACW 2 cut(s) 207, 652
TfiI GAWTC 3 cut(s) 545, 611, 779
Tru1I TTAA 2 cut(s) 282, 684
Tru9I TTAA 2 cut(s) 282, 684
TscAI CASTG 2 cut(s) 646, 873
TspDTI ATGAA 5 cut(s) 132, 267, 517, 558, 690
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 646, 873
XapI RAATTY 4 cut(s) 82, 187, 275, 342
XceI RCATGY 1 cut(s) 214
XmaJI CCTAGG 1 cut(s) 266
XspI CTAG 7 cut(s) 267, 293, 399, 425, 504, 804, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.