Rroxscaffold_4G00324170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000195
Physical Location & Seq
Reverse (-)
55457224 .. 55458539
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324170.1

Sequence Viewer

Length: 1275 bp
ATGGATCGATGGAGCTATGGATGGGATGATCGTAGGGGATATGAGCAACAAAGTTATAATGGTGAAGGTTATCAAGAATGGAATCCATATGCCGAGAGTCCTATGCCTTGTTACAACCAACCTTGTGCTTTGTGTAATTCTCCGTGGCACTCACCTTTTGAATGCTCTTTGAGATTTGAGTATCCGGATTTTATGAGAGAGTATGAGTACAAGATGGGGATGTATCAAGAGACATTTGGACCCGAAGCATATCCTCATGAACAAGCTTTTGATCCTAGGAAGCCATCACTTGAAGAACAACTAGCTCAATTGGAAGCCTCTAATGCTCAATTGCAAGCCTCCCAAGCTCAATCTCGATTGCATGCTAAATTGGAAGCCTTTAATGCTCAATTGCAAGCTTCTCAAGAAATGACTTCACATTCCAATGAGCAACTTGAGCCTAGTTTTGAGCAAGAGCCACCATTCACCATTTGTCATGAGCAAGATTCTTTCTTTGATCAAGTGGAGCCTAATTCAAGAGAAGAAATATATTTTGAGCATCATGAACAAGAGTTGCCTCTTCAAGATCGAGAGGGTGATGTTCATGTACTTGAAAGTGTGCTTGGTTATGGAAATTTTGAAGCAAATGGGTTGAGAGACTACACTTCGGAGGAACCGGTGCAATATTGGAAATCTAATCTTCACAATGAAGATGAGGATAGCTTGTCTAGTGAGGAAGAGGCGGAGCTTGAAGAGCTAGACCATATTCCCTTAATTGTTGAGGCCGATATTCCCAAGGAGGAAGAGAGTCCTTCAATACCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTCTCCTCCCACATCCACGAAGATCCATCATGTGCTTCCCAAGGTGGATTGTCGAATATTGAGCACTTATGTTATTCATGAGAAGATTGAGATTAAGGTACTTTTACCTCTCAATCCACCATTAAGTGATCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAGTGGAGCACTTGCACTCACTATTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTAAGAGCATTATTTCTACATCACTTGAGAAGGAGAAGGCAAGGTTGGCTCCTAGAAGAAAAATTGAGAAGAAGGAGAAGATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTGGTCTTGCCTTTATGACATGTCACGGAGTCCCTTAGCCCCTAACAATAGGGTGGTCGCACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

49.28

Weight (kDa)

4.69

Isoelectric Point (pI)

68.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 1172
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 1 cut(s) 722
AclWI GGATC 3 cut(s) 12, 266, 853
AcoI YGGCCR 1 cut(s) 1163
AcsI RAATTY 1 cut(s) 613
AfaI GTAC 3 cut(s) 209, 588, 936
AfiI CCNNNNNNNGG 1 cut(s) 1172
AflIII ACRYGT 1 cut(s) 1212
AgeI ACCGGT 1 cut(s) 655
AgsI TTSAA 9 cut(s) 161, 293, 516, 563, 593, 620, 731, 795, 821
AjuI GAANNNNNNNTTGG 4 cut(s) 585, 617, 1091, 1123
Alw21I GWGCWC 2 cut(s) 902, 1012
Alw26I GTCTC 2 cut(s) 224, 630
AlwI GGATC 3 cut(s) 12, 266, 853
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 2 cut(s) 762, 1163
ApoI RAATTY 1 cut(s) 613
AsiGI ACCGGT 1 cut(s) 655
AspA2I CCTAGG 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 5 cut(s) 74, 144, 457, 587, 997
AvaII GGWCC 1 cut(s) 239
AvrII CCTAGG 1 cut(s) 275
BalI TGGCCA 1 cut(s) 1165
Bbv12I GWGCWC 2 cut(s) 902, 1012
BccI CCATC 7 cut(s) 3, 15, 208, 292, 870, 982, 1038
BciVI GTATCC 2 cut(s) 192, 1275
BclI TGATCA 2 cut(s) 496, 964
BcoDI GTCTC 2 cut(s) 224, 630
BfaI CTAG 6 cut(s) 276, 302, 441, 708, 737, 1116
BfuI GTATCC 2 cut(s) 192, 1275
BlnI CCTAGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 4 cut(s) 241, 507, 654, 1113
BmsI GCATC 1 cut(s) 547
Bpu10I CCTNAGC 1 cut(s) 1228
BpuEI CTTGAG 4 cut(s) 387, 455, 1023, 1109
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 5 cut(s) 143, 275, 774, 827, 876
BsaWI WCCGGW 2 cut(s) 184, 655
BsaXI ACNNNNNCTCC 2 cut(s) 823, 853
Bsc4I CCNNNNNNNGG 1 cut(s) 1172
Bse118I RCCGGY 1 cut(s) 655
BseAI TCCGGA 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 5 cut(s) 143, 275, 774, 827, 876
BseGI GGATG 4 cut(s) 26, 31, 225, 848
BseLI CCNNNNNNNGG 1 cut(s) 1172
BseRI GAGGAG 1 cut(s) 831
BshFI GGCC 2 cut(s) 764, 1165
BshTI ACCGGT 1 cut(s) 655
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 902, 1012
BsiSI CCGG 2 cut(s) 185, 656
BslFI GGGAC 1 cut(s) 1209
BslI CCNNNNNNNGG 1 cut(s) 1172
BsmAI GTCTC 2 cut(s) 224, 630
BsmFI GGGAC 1 cut(s) 1209
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 764, 1165
Bsp1286I GDGCHC 2 cut(s) 902, 1012
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 7 cut(s) 4, 28, 271, 496, 565, 858, 964
BspACI CCGC 1 cut(s) 722
BspANI GGCC 2 cut(s) 764, 1165
BspDI ATCGAT 1 cut(s) 7
BspEI TCCGGA 1 cut(s) 184
BspHI TCATGA 4 cut(s) 256, 475, 541, 913
BspLI GGNNCC 4 cut(s) 241, 507, 654, 1113
BspPI GGATC 3 cut(s) 12, 266, 853
BspQI GCTCTTC 2 cut(s) 726, 816
BsrFI RCCGGY 1 cut(s) 655
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 5 cut(s) 143, 275, 774, 827, 876
BssMI GATC 7 cut(s) 4, 28, 271, 496, 565, 858, 964
BssT1I CCWWGG 4 cut(s) 275, 774, 827, 876
Bst6I CTCTTC 5 cut(s) 564, 711, 726, 777, 816
BstC8I GCNNGC 3 cut(s) 336, 363, 396
BstDEI CTNAG 2 cut(s) 1065, 1228
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 4 cut(s) 26, 31, 225, 848
BstKTI GATC 7 cut(s) 7, 31, 274, 499, 568, 861, 967
BstMAI GTCTC 2 cut(s) 224, 630
BstMBI GATC 7 cut(s) 4, 28, 271, 496, 565, 858, 964
BstMWI GCNNNNNNNGC 6 cut(s) 323, 344, 383, 436, 733, 1109
BstNSI RCATGY 2 cut(s) 365, 1216
BstX2I RGATCY 1 cut(s) 858
BstYI RGATCY 1 cut(s) 858
Bsu15I ATCGAT 1 cut(s) 7
BsuI GTATCC 2 cut(s) 192, 1275
BsuRI GGCC 2 cut(s) 764, 1165
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 4 cut(s) 26, 31, 225, 848
Cac8I GCNNGC 3 cut(s) 336, 363, 396
CciI TCATGA 4 cut(s) 256, 475, 541, 913
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 3 cut(s) 208, 587, 935
CspAI ACCGGT 1 cut(s) 655
CviAII CATG 8 cut(s) 257, 362, 476, 542, 584, 866, 914, 1213
CviQI GTAC 3 cut(s) 208, 587, 935
DdeI CTNAG 2 cut(s) 1065, 1228
DpnI GATC 7 cut(s) 6, 30, 273, 498, 567, 860, 966
DpnII GATC 7 cut(s) 4, 28, 271, 496, 565, 858, 964
EaeI YGGCCR 1 cut(s) 1163
Eam1104I CTCTTC 5 cut(s) 564, 711, 726, 777, 816
EarI CTCTTC 5 cut(s) 564, 711, 726, 777, 816
EciI GGCGGA 1 cut(s) 737
Eco130I CCWWGG 4 cut(s) 275, 774, 827, 876
Eco47I GGWCC 1 cut(s) 239
EcoT14I CCWWGG 4 cut(s) 275, 774, 827, 876
ErhI CCWWGG 4 cut(s) 275, 774, 827, 876
FaeI CATG 8 cut(s) 260, 365, 479, 545, 587, 869, 917, 1216
FalI AAGNNNNNCTT 2 cut(s) 1142, 1174
FaqI GGGAC 1 cut(s) 1209
FatI CATG 8 cut(s) 256, 361, 475, 541, 583, 865, 913, 1212
FauNDI CATATG 1 cut(s) 88
FbaI TGATCA 2 cut(s) 496, 964
FokI GGATG 4 cut(s) 33, 38, 232, 835
FspBI CTAG 6 cut(s) 276, 302, 441, 708, 737, 1116
HaeIII GGCC 2 cut(s) 764, 1165
HapII CCGG 2 cut(s) 185, 656
Hin1II CATG 8 cut(s) 260, 365, 479, 545, 587, 869, 917, 1216
HindIII AAGCTT 2 cut(s) 264, 396
HinfI GANTC 5 cut(s) 82, 97, 485, 787, 1222
HpaII CCGG 2 cut(s) 185, 656
HphI GGTGA 5 cut(s) 74, 144, 457, 587, 997
Hpy188I TCNGA 1 cut(s) 649
HpyAV CCTTC 5 cut(s) 59, 801, 1087, 1093, 1129
HpyCH4V TGCA 5 cut(s) 334, 361, 394, 661, 1016
HpyF10VI GCNNNNNNNGC 6 cut(s) 323, 344, 383, 436, 733, 1109
HpyF3I CTNAG 2 cut(s) 1065, 1228
Hsp92II CATG 8 cut(s) 260, 365, 479, 545, 587, 869, 917, 1216
Kpn2I TCCGGA 1 cut(s) 184
Ksp22I TGATCA 2 cut(s) 496, 964
Kzo9I GATC 7 cut(s) 4, 28, 271, 496, 565, 858, 964
LguI GCTCTTC 2 cut(s) 726, 816
LmnI GCTCC 5 cut(s) 12, 505, 724, 1007, 1117
LpnPI CCDG 2 cut(s) 198, 669
LweI GCATC 1 cut(s) 547
MaeI CTAG 6 cut(s) 276, 302, 441, 708, 737, 1116
MaeIII GTNAC 2 cut(s) 110, 1215
MalI GATC 7 cut(s) 6, 30, 273, 498, 567, 860, 966
MboI GATC 7 cut(s) 4, 28, 271, 496, 565, 858, 964
MfeI CAATTG 4 cut(s) 308, 329, 389, 1170
MflI RGATCY 1 cut(s) 858
MhlI GDGCHC 2 cut(s) 902, 1012
MlsI TGGCCA 1 cut(s) 1165
MluNI TGGCCA 1 cut(s) 1165
MlyI GAGTC 3 cut(s) 106, 796, 1231
Mox20I TGGCCA 1 cut(s) 1165
MroI TCCGGA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 5 cut(s) 381, 752, 930, 959, 1146
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 1165
MspI CCGG 2 cut(s) 185, 656
MunI CAATTG 4 cut(s) 308, 329, 389, 1170
Mva1269I GAATGC 1 cut(s) 167
MwoI GCNNNNNNNGC 6 cut(s) 323, 344, 383, 436, 733, 1109
NdeI CATATG 1 cut(s) 88
NdeII GATC 7 cut(s) 4, 28, 271, 496, 565, 858, 964
NlaIII CATG 8 cut(s) 260, 365, 479, 545, 587, 869, 917, 1216
NlaIV GGNNCC 4 cut(s) 241, 507, 654, 1113
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 1215
NspI RCATGY 2 cut(s) 365, 1216
PaeI GCATGC 1 cut(s) 365
PagI TCATGA 4 cut(s) 256, 475, 541, 913
PciI ACATGT 1 cut(s) 1212
PciSI GCTCTTC 2 cut(s) 726, 816
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 82, 485
PflMI CCANNNNNTGG 1 cut(s) 1172
PinAI ACCGGT 1 cut(s) 655
PleI GAGTC 3 cut(s) 105, 795, 1230
PpsI GAGTC 3 cut(s) 105, 795, 1230
PscI ACATGT 1 cut(s) 1212
PsiI TTATAA 1 cut(s) 57
PspN4I GGNNCC 4 cut(s) 241, 507, 654, 1113
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 858
RsaI GTAC 3 cut(s) 209, 588, 936
RsaNI GTAC 3 cut(s) 208, 587, 935
RseI CAYNNNNRTG 1 cut(s) 423
SapI GCTCTTC 2 cut(s) 726, 816
SaqAI TTAA 5 cut(s) 381, 752, 930, 959, 1146
Sau3AI GATC 7 cut(s) 4, 28, 271, 496, 565, 858, 964
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 3 cut(s) 106, 796, 1231
SduI GDGCHC 2 cut(s) 902, 1012
SfaNI GCATC 1 cut(s) 547
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 5 cut(s) 402, 434, 1038, 1088, 1256
SmoI CTYRAG 5 cut(s) 402, 434, 1038, 1088, 1256
SphI GCATGC 1 cut(s) 365
SsiI CCGC 1 cut(s) 722
SspI AATATT 2 cut(s) 665, 894
SspMI CTAG 6 cut(s) 276, 302, 441, 708, 737, 1116
StyI CCWWGG 4 cut(s) 275, 774, 827, 876
TaqI TCGA 4 cut(s) 7, 355, 568, 889
TatI WGTACW 2 cut(s) 207, 586
TfiI GAWTC 2 cut(s) 82, 485
Tru1I TTAA 5 cut(s) 381, 752, 930, 959, 1146
Tru9I TTAA 5 cut(s) 381, 752, 930, 959, 1146
TseFI GTSAC 1 cut(s) 1215
Tsp45I GTSAC 1 cut(s) 1215
TspDTI ATGAA 6 cut(s) 273, 558, 572, 702, 825, 902
TspGWI ACGGA 2 cut(s) 132, 1234
Van91I CCANNNNNTGG 1 cut(s) 1172
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 613
XceI RCATGY 2 cut(s) 365, 1216
XmaJI CCTAGG 1 cut(s) 275
XspI CTAG 6 cut(s) 276, 302, 441, 708, 737, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.