Rroxscaffold_5G00346790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000195
Physical Location & Seq
Reverse (-)
17812334 .. 17813300
967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346790.1

Sequence Viewer

Length: 822 bp
ATGGATCAATGGAGCTATGGATGGGATGATCGTATGGGATATGAGCAACAAAGTTATGATGGTGAAGGTTATCAAGAATGGAATCCCTATGCCGAGAGTCCTATGCCTTGTTACAACCAACCTTGTGCTTTGTGTAATTCTCCGTGGCATTCACCTTTTGAGTGTTCTTTGAGGTTTGAGTATTGGGATTTTATGCAAGAATATGAGTACAAGATGGCGATGTATCTAGAGACATGTCAAGCTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTAGCTCAATTGGAAGCCTCTAATGCTCAATTGCAAGCCTCCCAAGCTCGATTGCATGCTAAATTGGAAGCCTTCAATGCTCAATTGCAAGCTTCTCAAGAAATGATTTCACATTCCAATGAGCAACTTGAGCCTAGTCTTGAGCAAGAGCCACCTTTCACCATTTTTCATGAGCAAGATTCTTCCTTTGACCAAGTGGAGCCTAATTCAAGAGAAGGAATATATTTTGAGCATTATGAACAAGAGTTGCCTTTTCAAGATCGAGAGGATGAGGTATATGAAGTTGATTCCGAAGAACAGGATAGCTTGTCTAGTGAGGAGGATGCGGAGCTTGAAGAGCTACACCATGATCCCTTAATCCTTGAGGCCGATATTCCTAAGGAGGAAGAGAGTCCTTTAATGCATTGTAATGATAAAGGAAGTGGAGCACTTGCACTCAACCTTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTACGATCATCATTTCTACACCACTTTTGAAGGAGAATACAAGGTTAGCTTCTAGAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

31.86

Weight (kDa)

4.28

Isoelectric Point (pI)

65.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 602
AclWI GGATC 2 cut(s) 12, 620
AfaI GTAC 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 6 cut(s) 269, 352, 486, 533, 611, 787
AluBI AGCT 9 cut(s) 15, 242, 281, 323, 368, 582, 607, 616, 806
AluI AGCT 9 cut(s) 15, 242, 281, 323, 368, 582, 607, 616, 806
Alw21I GWGCWC 1 cut(s) 706
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 2 cut(s) 12, 620
AoxI GGCC 1 cut(s) 642
AspA2I CCTAGG 1 cut(s) 251
AsuHPI GGTGA 3 cut(s) 74, 144, 427
AvrII CCTAGG 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 706
BccI CCATC 5 cut(s) 15, 53, 208, 268, 732
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 6 cut(s) 227, 252, 278, 411, 588, 810
BlnI CCTAGG 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 477
BmsI GCATC 1 cut(s) 589
BpuEI CTTGAG 5 cut(s) 357, 425, 437, 659, 717
BsaJI CCNNGG 2 cut(s) 143, 251
Bse21I CCTNAGG 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 143, 251
BseGI GGATG 4 cut(s) 26, 31, 550, 604
BseRI GAGGAG 1 cut(s) 608
BshFI GGCC 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 706
BsmAI GTCTC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 706
Bsp143I GATC 5 cut(s) 4, 28, 535, 625, 762
BspACI CCGC 1 cut(s) 602
BspANI GGCC 1 cut(s) 644
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 477
BspPI GGATC 2 cut(s) 12, 620
BspQI GCTCTTC 1 cut(s) 606
BssECI CCNNGG 2 cut(s) 143, 251
BssMI GATC 5 cut(s) 4, 28, 535, 625, 762
BssT1I CCWWGG 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 606, 657
BstC8I GCNNGC 3 cut(s) 312, 333, 366
BstDEI CTNAG 1 cut(s) 654
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 4 cut(s) 26, 31, 550, 604
BstKTI GATC 5 cut(s) 7, 31, 538, 628, 765
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 5 cut(s) 4, 28, 535, 625, 762
BstMWI GCNNNNNNNGC 6 cut(s) 256, 299, 320, 353, 406, 613
BstNSI RCATGY 2 cut(s) 237, 335
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 233
BtsCI GGATG 4 cut(s) 26, 31, 550, 604
Cac8I GCNNGC 3 cut(s) 312, 333, 366
CciI TCATGA 1 cut(s) 445
Csp6I GTAC 1 cut(s) 208
CviAII CATG 4 cut(s) 234, 332, 446, 623
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 654
DpnI GATC 5 cut(s) 6, 30, 537, 627, 764
DpnII GATC 5 cut(s) 4, 28, 535, 625, 762
Eam1104I CTCTTC 2 cut(s) 606, 657
EarI CTCTTC 2 cut(s) 606, 657
Eco130I CCWWGG 1 cut(s) 251
Eco81I CCTNAGG 1 cut(s) 654
EcoT14I CCWWGG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 251
FaeI CATG 4 cut(s) 237, 335, 449, 626
FalI AAGNNNNNCTT 2 cut(s) 790, 822
FatI CATG 4 cut(s) 233, 331, 445, 622
FokI GGATG 4 cut(s) 33, 38, 557, 611
FspBI CTAG 6 cut(s) 227, 252, 278, 411, 588, 810
HaeIII GGCC 1 cut(s) 644
Hin1II CATG 4 cut(s) 237, 335, 449, 626
HindIII AAGCTT 2 cut(s) 240, 366
HinfI GANTC 5 cut(s) 82, 97, 455, 563, 667
HphI GGTGA 3 cut(s) 74, 144, 427
Hpy188I TCNGA 1 cut(s) 568
HpyAV CCTTC 4 cut(s) 59, 358, 485, 781
HpyCH4V TGCA 6 cut(s) 196, 310, 331, 364, 679, 710
HpyF10VI GCNNNNNNNGC 6 cut(s) 256, 299, 320, 353, 406, 613
HpyF3I CTNAG 1 cut(s) 654
Hsp92II CATG 4 cut(s) 237, 335, 449, 626
Kzo9I GATC 5 cut(s) 4, 28, 535, 625, 762
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 4 cut(s) 12, 475, 604, 701
LpnPI CCDG 1 cut(s) 560
LweI GCATC 1 cut(s) 589
MaeI CTAG 6 cut(s) 227, 252, 278, 411, 588, 810
MaeIII GTNAC 1 cut(s) 110
MalI GATC 5 cut(s) 6, 30, 537, 627, 764
MboI GATC 5 cut(s) 4, 28, 535, 625, 762
MboII GAAGA 5 cut(s) 281, 450, 581, 623, 674
MfeI CAATTG 3 cut(s) 284, 305, 359
MhlI GDGCHC 1 cut(s) 706
MluCI AATT 6 cut(s) 136, 284, 305, 338, 359, 481
MlyI GAGTC 2 cut(s) 106, 676
MnlI CCTC 9 cut(s) 165, 304, 325, 535, 541, 586, 589, 634, 652
Mph1103I ATGCAT 1 cut(s) 681
MseI TTAA 2 cut(s) 632, 674
MslI CAYNNNNRTG 2 cut(s) 393, 684
MunI CAATTG 3 cut(s) 284, 305, 359
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 6 cut(s) 256, 299, 320, 353, 406, 613
NdeII GATC 5 cut(s) 4, 28, 535, 625, 762
NlaIII CATG 4 cut(s) 237, 335, 449, 626
NlaIV GGNNCC 1 cut(s) 477
NmeAIII GCCGAG 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 681
NspI RCATGY 2 cut(s) 237, 335
PaeI GCATGC 1 cut(s) 335
PagI TCATGA 1 cut(s) 445
PciI ACATGT 1 cut(s) 233
PciSI GCTCTTC 1 cut(s) 606
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 82, 455, 563
PleI GAGTC 2 cut(s) 105, 675
PpsI GAGTC 2 cut(s) 105, 675
PscI ACATGT 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 477
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 393, 684
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 632, 674
Sau3AI GATC 5 cut(s) 4, 28, 535, 625, 762
SchI GAGTC 2 cut(s) 106, 676
SduI GDGCHC 1 cut(s) 706
SfaNI GCATC 1 cut(s) 589
SmiMI CAYNNNNRTG 2 cut(s) 393, 684
SmlI CTYRAG 5 cut(s) 372, 404, 416, 638, 732
SmoI CTYRAG 5 cut(s) 372, 404, 416, 638, 732
SphI GCATGC 1 cut(s) 335
Sse9I AATT 6 cut(s) 136, 284, 305, 338, 359, 481
SsiI CCGC 1 cut(s) 602
SspMI CTAG 6 cut(s) 227, 252, 278, 411, 588, 810
StyI CCWWGG 1 cut(s) 251
TaqI TCGA 2 cut(s) 325, 538
TasI AATT 6 cut(s) 136, 284, 305, 338, 359, 481
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 3 cut(s) 82, 455, 563
Tru1I TTAA 2 cut(s) 632, 674
Tru9I TTAA 2 cut(s) 632, 674
TspDTI ATGAA 3 cut(s) 434, 528, 570
TspGWI ACGGA 1 cut(s) 132
XbaI TCTAGA 2 cut(s) 226, 809
XceI RCATGY 2 cut(s) 237, 335
XmaJI CCTAGG 1 cut(s) 251
XspI CTAG 6 cut(s) 227, 252, 278, 411, 588, 810
Zsp2I ATGCAT 1 cut(s) 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.