RchiOBHm_Chr1g0372841

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000195
Physical Location & Seq
Forward (+)
61361098 .. 61363283
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59681

Sequence Viewer

Length: 798 bp
ATGGAGCCTAATTCAAGAGAAGAAGTATATTATGAGCATCATGAGCAAGAGTTGCCTATTCAAGATCGAGATGGTGATGTTCATGAACAAGAAAGTGAGCTTGGTTATGAAAGTTCCGATGCAAGTGGGGTGAGTGACTACACTTCGGAGGAATTGGTGCAATATTGGGAATCTAATCTTCACAATGAAGAGGAGGTATATGAAGTTGATTCCGAAGAGGATAGATTGACTAGTGAGGAAGATGTGGAGCTTGAAGACTTACACCATGATCCCTTAATCGTTGAGGTCGATATTCCCAAAGAGAAAGAGAGTCATTCAATACCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTCTCCTCCCACATCCATGGAGATCCATCATGAGCTTCCGAAGGTGGAGAGTAGGACATTGAGCACTTACATTCTTAATGAGAGGATTGGGATCAAGGTACTTTTACCTCCAAATCCACCATTAAGTGGCCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATGGAGCACTTGCACTCAACTTTTCCCATCACTCTCAAGAGCTTCTACCACCTATTTTTCCTATGAGCATCATTTCTACACCACTTTTGAAGGAGAAGGCAAGGTTGGCTCCTACAAGAATAATTGAGAAGAAGGGGAAGATTAAGAAGCTACACTTTTGGCCACCAATTGGAATATTCATAGTTAGCTCTTGGTCTTGCCTCTATGATATATCAAGGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGCACTTGAGAAATATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

30.54

Weight (kDa)

4.6

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 485, 695
AclWI GGATC 3 cut(s) 263, 376, 458
AcoI YGGCCR 2 cut(s) 487, 686
AfaI GTAC 1 cut(s) 459
AfiI CCNNNNNNNGG 2 cut(s) 485, 695
AgsI TTSAA 6 cut(s) 15, 62, 254, 318, 344, 616
AhlI ACTAGT 1 cut(s) 230
AjuI GAANNNNNNNTTGG 4 cut(s) 84, 116, 614, 646
AluBI AGCT 6 cut(s) 100, 250, 394, 568, 676, 714
AluI AGCT 6 cut(s) 100, 250, 394, 568, 676, 714
Alw21I GWGCWC 2 cut(s) 425, 535
AlwI GGATC 3 cut(s) 263, 376, 458
AoxI GGCC 2 cut(s) 487, 686
AsuHPI GGTGA 3 cut(s) 86, 142, 520
BalI TGGCCA 2 cut(s) 489, 688
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 425, 535
BccI CCATC 4 cut(s) 65, 393, 505, 561
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 6, 636
BmsI GCATC 3 cut(s) 46, 109, 603
BpiI GAAGAC 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 751
BpuEI CTTGAG 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 350, 375
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 695
Bse8I GATNNNNATC 1 cut(s) 449
BseDI CCNNGG 2 cut(s) 350, 375
BseGI GGATG 1 cut(s) 371
BseJI GATNNNNATC 1 cut(s) 449
BseLI CCNNNNNNNGG 2 cut(s) 485, 695
BseRI GAGGAG 2 cut(s) 206, 354
BshFI GGCC 2 cut(s) 489, 688
BsiHKAI GWGCWC 2 cut(s) 425, 535
BslFI GGGAC 1 cut(s) 732
BslI CCNNNNNNNGG 2 cut(s) 485, 695
BsmFI GGGAC 1 cut(s) 732
BsnI GGCC 2 cut(s) 489, 688
Bsp1286I GDGCHC 2 cut(s) 425, 535
Bsp143I GATC 4 cut(s) 64, 268, 381, 450
Bsp19I CCATGG 1 cut(s) 375
BspANI GGCC 2 cut(s) 489, 688
BspHI TCATGA 3 cut(s) 40, 82, 388
BspLI GGNNCC 2 cut(s) 6, 636
BspPI GGATC 3 cut(s) 263, 376, 458
BspQI GCTCTTC 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 350, 375
BssMI GATC 4 cut(s) 64, 268, 381, 450
BssT1I CCWWGG 2 cut(s) 350, 375
Bst6I CTCTTC 3 cut(s) 183, 210, 339
BstAPI GCANNNNNTGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 751
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 371
BstKTI GATC 4 cut(s) 67, 271, 384, 453
BstMBI GATC 4 cut(s) 64, 268, 381, 450
BstMWI GCNNNNNNNGC 3 cut(s) 43, 52, 632
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 376
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 2 cut(s) 489, 688
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 371
CciI TCATGA 3 cut(s) 40, 82, 388
Csp6I GTAC 1 cut(s) 458
CviAII CATG 5 cut(s) 41, 83, 266, 376, 389
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 1 cut(s) 751
DpnI GATC 4 cut(s) 66, 270, 383, 452
DpnII GATC 4 cut(s) 64, 268, 381, 450
EaeI YGGCCR 2 cut(s) 487, 686
Eam1104I CTCTTC 3 cut(s) 183, 210, 339
EarI CTCTTC 3 cut(s) 183, 210, 339
Eco130I CCWWGG 2 cut(s) 350, 375
EcoT14I CCWWGG 2 cut(s) 350, 375
ErhI CCWWGG 2 cut(s) 350, 375
FaeI CATG 5 cut(s) 44, 86, 269, 379, 392
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FaqI GGGAC 1 cut(s) 732
FatI CATG 5 cut(s) 40, 82, 265, 375, 388
FokI GGATG 1 cut(s) 358
FspBI CTAG 1 cut(s) 231
HaeIII GGCC 2 cut(s) 489, 688
Hin1II CATG 5 cut(s) 44, 86, 269, 379, 392
HinfI GANTC 4 cut(s) 170, 209, 310, 745
HphI GGTGA 3 cut(s) 86, 142, 520
Hpy188I TCNGA 4 cut(s) 118, 148, 214, 399
Hpy188III TCNNGA 7 cut(s) 15, 41, 62, 68, 83, 389, 563
HpyAV CCTTC 4 cut(s) 394, 610, 616, 652
HpyCH4V TGCA 3 cut(s) 122, 160, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 52, 632
HpyF3I CTNAG 1 cut(s) 751
Hsp92II CATG 5 cut(s) 44, 86, 269, 379, 392
Kzo9I GATC 4 cut(s) 64, 268, 381, 450
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 4 cut(s) 4, 247, 530, 640
LweI GCATC 3 cut(s) 46, 109, 603
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 134
MalI GATC 4 cut(s) 66, 270, 383, 452
MboI GATC 4 cut(s) 64, 268, 381, 450
MfeI CAATTG 1 cut(s) 693
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 2 cut(s) 425, 535
MlsI TGGCCA 2 cut(s) 489, 688
MluCI AATT 5 cut(s) 10, 152, 339, 648, 693
MluNI TGGCCA 2 cut(s) 489, 688
MlyI GAGTC 2 cut(s) 319, 754
Mox20I TGGCCA 2 cut(s) 489, 688
MscI TGGCCA 2 cut(s) 489, 688
MseI TTAA 4 cut(s) 275, 435, 482, 669
MslI CAYNNNNRTG 1 cut(s) 374
Msp20I TGGCCA 2 cut(s) 489, 688
MunI CAATTG 1 cut(s) 693
MwoI GCNNNNNNNGC 3 cut(s) 43, 52, 632
NcoI CCATGG 1 cut(s) 375
NdeII GATC 4 cut(s) 64, 268, 381, 450
NlaIII CATG 5 cut(s) 44, 86, 269, 379, 392
NlaIV GGNNCC 2 cut(s) 6, 636
NmuCI GTSAC 1 cut(s) 134
PagI TCATGA 3 cut(s) 40, 82, 388
PciSI GCTCTTC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 2 cut(s) 170, 209
PflMI CCANNNNNTGG 2 cut(s) 485, 695
PleI GAGTC 2 cut(s) 318, 753
PpsI GAGTC 2 cut(s) 318, 753
PspN4I GGNNCC 2 cut(s) 6, 636
PsuI RGATCY 1 cut(s) 381
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 374
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 4 cut(s) 275, 435, 482, 669
Sau3AI GATC 4 cut(s) 64, 268, 381, 450
SchI GAGTC 2 cut(s) 319, 754
SduI GDGCHC 2 cut(s) 425, 535
SfaNI GCATC 3 cut(s) 46, 109, 603
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 561, 779
SmoI CTYRAG 2 cut(s) 561, 779
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 5 cut(s) 10, 152, 339, 648, 693
SspI AATATT 2 cut(s) 164, 702
SspMI CTAG 1 cut(s) 231
StyI CCWWGG 2 cut(s) 350, 375
TaqI TCGA 2 cut(s) 67, 288
TasI AATT 5 cut(s) 10, 152, 339, 648, 693
TfiI GAWTC 2 cut(s) 170, 209
Tru1I TTAA 4 cut(s) 275, 435, 482, 669
Tru9I TTAA 4 cut(s) 275, 435, 482, 669
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 7 cut(s) 71, 99, 123, 201, 216, 348, 694
Van91I CCANNNNNTGG 2 cut(s) 485, 695
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.