Rroxscaffold_6G00418900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000195
Physical Location & Seq
Reverse (-)
40460378 .. 40465472
5095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418900.1

Sequence Viewer

Length: 1335 bp
ATGGCTTCTTCATCGTCGTTGATAGCTCCCGCAGTCCGGTTCGGCGGCTCTTGCAGTCCGGTTCGGCAGCTCCTGCAGTTCGGTTGGCAGTTCCTCCTGCAGTCCGGTTCGGCAGTTCCTCCTCCGGTTTCAGTTCCGAGCAGTCCATTTCCGGTTCCAAGTTCGGTCTCTAAAGTTCCGGGCTGCTCAAGTGGACAGTCCTATACTTTTTCGATGGAGGAATTAAAGGTTTTCACTTCACTTCATCAAGGCTTCATCACCACAAGGGATTTTGACTTTGGTAAAGAGTGGGGACTTAATTTCAAGTTGGGTTCATATTTGCCTCTAGCAATTTGTTATCAAGTTTATGAGCCTAGGAAGGAATTCGTTGAAGGACTACTAGCTCAATTGCAAGCCTCTCAAGCTCTATTGCAAGCCTCCCAAGCTCAATTGCAAGCTTCTCAAGAAATACTTGTACATTCCAATGAGCAACTTGAGGCAAGTCTTGCACAAGAGCCACCCTTCGCCATTTATGAGCATGAATCTTTCTTTGACCACGTGGAGCCTATTTCAAGAGAAGAGGTACATATCAAGCATCTTGAGAAAGAGTCCTTTATGCAAGTTGAAAATGATGATAGTGATGTTGATGTACAAGAAATTGAGCTTGGTTATGAAAGTTGCAATTCAAGTGGGGTAAGAGACTACACTTCGGAGGAATGGGTACAATATTGGAAATCTAAGCTTCCAAATGAAGATGAGATATTTGAAGATGATTCCGAAGAAGAGGATGGCTTGTCTAGTGAGGAGGATGCGGAGTTTGAGGTCATACACCATAATCCCTTGTTCATTGAGGAGGATGCGGAGCTTCAAGTCATACACCATAATCCCTTATTCATTGAGGTCGATATTCTCATGGAGGAAGAAAGTCCTTCACTACCTTGTGATGAAGAAGTTAAAGAACCTAGGACTTTCTCACCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGATTGTAGAATATTGAGCACTTATGTTATTCATGAGAAGATTGAGATCAAGGTACTTTTACCTTCTAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATGGAGCACTTGCACTCACCCTTTACCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTATGAGCATCAATTCTACACCACTTGAGAAGGAGAAGGCAAGGTTGGCTCCTAGAAGAAAAATTGAGAAGAGGGGAAGACTAAGAAGCTACACTTTTGCCCACCAATTGGAGTATTCTTATGTATTTCTTGTTCTTGTATCTATGACACATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

50.5

Weight (kDa)

4.72

Isoelectric Point (pI)

66.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1076, 1285
AciI CCGC 4 cut(s) 30, 45, 791, 839
AclWI GGATC 1 cut(s) 967
AcsI RAATTY 1 cut(s) 362
AcvI CACGTG 1 cut(s) 538
AfaI GTAC 5 cut(s) 456, 564, 630, 702, 1050
AfiI CCNNNNNNNGG 3 cut(s) 36, 1076, 1285
AgsI TTSAA 7 cut(s) 304, 371, 552, 605, 666, 746, 848
AjuI GAANNNNNNNTTGG 4 cut(s) 627, 659, 1205, 1237
Alw21I GWGCWC 2 cut(s) 1016, 1126
Alw26I GTCTC 2 cut(s) 172, 672
AlwI GGATC 1 cut(s) 967
AlwNI CAGNNNCTG 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 67, 183
ApoI RAATTY 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 362
AspA2I CCTAGG 2 cut(s) 353, 941
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 4 cut(s) 250, 945, 1111, 1126
AvrII CCTAGG 2 cut(s) 353, 941
BbrPI CACGTG 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 1261
Bbv12I GWGCWC 2 cut(s) 1016, 1126
BbvI GCAGC 2 cut(s) 79, 170
BccI CCATC 5 cut(s) 208, 761, 984, 1096, 1152
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 2 cut(s) 172, 672
BfaI CTAG 6 cut(s) 326, 354, 380, 777, 942, 1230
BfmI CTRYAG 2 cut(s) 74, 98
BisI GCNGC 3 cut(s) 46, 68, 184
BlnI CCTAGG 2 cut(s) 353, 941
BlsI GCNGC 3 cut(s) 47, 69, 185
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 3 cut(s) 156, 543, 1227
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 4 cut(s) 583, 778, 826, 1194
BpiI GAAGAC 1 cut(s) 1261
BpuEI CTTGAG 7 cut(s) 172, 384, 426, 494, 599, 1137, 1223
BpuMI CCSGG 1 cut(s) 180
Bsa29I ATCGAT 1 cut(s) 1330
BsaAI YACGTR 1 cut(s) 538
BsaBI GATNNNNATC 1 cut(s) 1040
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 4 cut(s) 353, 941, 966, 990
BsaWI WCCGGW 5 cut(s) 36, 58, 104, 124, 151
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 1076, 1285
Bse8I GATNNNNATC 1 cut(s) 1040
BseCI ATCGAT 1 cut(s) 1330
BseDI CCNNGG 4 cut(s) 353, 941, 966, 990
BseGI GGATG 4 cut(s) 772, 793, 841, 962
BseJI GATNNNNATC 1 cut(s) 1040
BseLI CCNNNNNNNGG 3 cut(s) 36, 1076, 1285
BseRI GAGGAG 3 cut(s) 111, 797, 845
BseXI GCAGC 2 cut(s) 79, 170
BshVI ATCGAT 1 cut(s) 1330
BsiHKAI GWGCWC 2 cut(s) 1016, 1126
BsiSI CCGG 6 cut(s) 37, 59, 105, 125, 152, 179
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 3 cut(s) 36, 1076, 1285
BsmAI GTCTC 2 cut(s) 172, 672
BsmFI GGGAC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 1016, 1126
Bsp1407I TGTACA 2 cut(s) 454, 628
Bsp143I GATC 2 cut(s) 972, 1041
Bsp19I CCATGG 1 cut(s) 966
BspACI CCGC 4 cut(s) 30, 45, 791, 839
BspDI ATCGAT 1 cut(s) 1330
BspHI TCATGA 2 cut(s) 979, 1027
BspLI GGNNCC 3 cut(s) 156, 543, 1227
BspMAI CTGCAG 2 cut(s) 78, 102
BspPI GGATC 1 cut(s) 967
BspTNI GGTCTC 1 cut(s) 172
BsrGI TGTACA 2 cut(s) 454, 628
BssECI CCNNGG 4 cut(s) 353, 941, 966, 990
BssMI GATC 2 cut(s) 972, 1041
BssT1I CCWWGG 4 cut(s) 353, 941, 966, 990
Bst4CI ACNGT 1 cut(s) 198
Bst6I CTCTTC 3 cut(s) 552, 756, 1241
BstAPI GCANNNNNTGC 2 cut(s) 73, 485
BstAUI TGTACA 2 cut(s) 454, 628
BstBAI YACGTR 1 cut(s) 538
BstC8I GCNNGC 3 cut(s) 393, 414, 435
BstDEI CTNAG 2 cut(s) 717, 1259
BstDSI CCRYGG 1 cut(s) 966
BstF5I GGATG 4 cut(s) 772, 793, 841, 962
BstKTI GATC 2 cut(s) 975, 1044
BstMAI GTCTC 2 cut(s) 172, 672
BstMBI GATC 2 cut(s) 972, 1041
BstMWI GCNNNNNNNGC 6 cut(s) 51, 73, 401, 422, 485, 1223
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 2 cut(s) 74, 98
BstV1I GCAGC 2 cut(s) 79, 170
BstV2I GAAGAC 1 cut(s) 1261
BstX2I RGATCY 1 cut(s) 972
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 1 cut(s) 972
Bsu15I ATCGAT 1 cut(s) 1330
BsuTUI ATCGAT 1 cut(s) 1330
BtgI CCRYGG 1 cut(s) 966
BtsCI GGATG 4 cut(s) 772, 793, 841, 962
Cac8I GCNNGC 3 cut(s) 393, 414, 435
CaiI CAGNNNCTG 1 cut(s) 73
CciI TCATGA 2 cut(s) 979, 1027
ClaI ATCGAT 1 cut(s) 1330
Csp6I GTAC 5 cut(s) 455, 563, 629, 701, 1049
CspCI CAANNNNNGTGG 2 cut(s) 649, 684
CviAII CATG 5 cut(s) 518, 892, 967, 980, 1028
CviQI GTAC 5 cut(s) 455, 563, 629, 701, 1049
DdeI CTNAG 2 cut(s) 717, 1259
DpnI GATC 2 cut(s) 974, 1043
DpnII GATC 2 cut(s) 972, 1041
Eam1104I CTCTTC 3 cut(s) 552, 756, 1241
EarI CTCTTC 3 cut(s) 552, 756, 1241
Eco130I CCWWGG 4 cut(s) 353, 941, 966, 990
Eco31I GGTCTC 1 cut(s) 172
Eco72I CACGTG 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 362
EcoT14I CCWWGG 4 cut(s) 353, 941, 966, 990
ErhI CCWWGG 4 cut(s) 353, 941, 966, 990
FaeI CATG 5 cut(s) 521, 895, 970, 983, 1031
FalI AAGNNNNNCTT 4 cut(s) 435, 467, 1255, 1287
FaqI GGGAC 1 cut(s) 306
FatI CATG 5 cut(s) 517, 891, 966, 979, 1027
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 46, 68, 184
FokI GGATG 4 cut(s) 779, 800, 848, 949
Fsp4HI GCNGC 3 cut(s) 46, 68, 184
FspBI CTAG 6 cut(s) 326, 354, 380, 777, 942, 1230
GluI GCNGC 3 cut(s) 46, 68, 184
HapII CCGG 6 cut(s) 37, 59, 105, 125, 152, 179
Hin1II CATG 5 cut(s) 521, 895, 970, 983, 1031
HindIII AAGCTT 2 cut(s) 435, 719
HinfI GANTC 3 cut(s) 521, 587, 752
HpaII CCGG 6 cut(s) 37, 59, 105, 125, 152, 179
HphI GGTGA 4 cut(s) 250, 945, 1111, 1126
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 3 cut(s) 138, 691, 757
Hpy188III TCNNGA 6 cut(s) 443, 552, 578, 980, 1028, 1154
Hpy8I GTNNAC 1 cut(s) 194
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 7 cut(s) 352, 365, 511, 918, 1068, 1201, 1207
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 537
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 73, 401, 422, 485, 1223
HpyF3I CTNAG 2 cut(s) 717, 1259
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 5 cut(s) 521, 895, 970, 983, 1031
Kzo9I GATC 2 cut(s) 972, 1041
LmnI GCTCC 6 cut(s) 31, 75, 541, 841, 1121, 1231
LpnPI CCDG 8 cut(s) 50, 72, 86, 110, 118, 138, 165, 192
Lsp1109I GCAGC 2 cut(s) 79, 170
LweI GCATC 4 cut(s) 583, 778, 826, 1194
MaeI CTAG 6 cut(s) 326, 354, 380, 777, 942, 1230
MaeII ACGT 1 cut(s) 537
MalI GATC 2 cut(s) 974, 1043
MboI GATC 2 cut(s) 972, 1041
MfeI CAATTG 3 cut(s) 386, 428, 1283
MflI RGATCY 1 cut(s) 972
MhlI GDGCHC 2 cut(s) 1016, 1126
MlyI GAGTC 1 cut(s) 596
MroXI GAANNNNTTC 1 cut(s) 362
MseI TTAA 4 cut(s) 224, 297, 933, 1073
MslI CAYNNNNRTG 3 cut(s) 462, 965, 1330
MspI CCGG 6 cut(s) 37, 59, 105, 125, 152, 179
MspR9I CCNGG 1 cut(s) 180
MunI CAATTG 3 cut(s) 386, 428, 1283
MwoI GCNNNNNNNGC 6 cut(s) 51, 73, 401, 422, 485, 1223
NciI CCSGG 1 cut(s) 180
NcoI CCATGG 1 cut(s) 966
NdeII GATC 2 cut(s) 972, 1041
NlaIII CATG 5 cut(s) 521, 895, 970, 983, 1031
NlaIV GGNNCC 3 cut(s) 156, 543, 1227
PagI TCATGA 2 cut(s) 979, 1027
PdmI GAANNNNTTC 1 cut(s) 362
PfeI GAWTC 2 cut(s) 521, 752
PflMI CCANNNNNTGG 2 cut(s) 1076, 1285
PkrI GCNGC 3 cut(s) 47, 69, 185
PleI GAGTC 1 cut(s) 595
PmaCI CACGTG 1 cut(s) 538
PmlI CACGTG 1 cut(s) 538
PpsI GAGTC 1 cut(s) 595
Ppu21I YACGTR 1 cut(s) 538
PspCI CACGTG 1 cut(s) 538
PspN4I GGNNCC 3 cut(s) 156, 543, 1227
PsrI GAACNNNNNNTAC 2 cut(s) 1293, 1325
PstI CTGCAG 2 cut(s) 78, 102
PstNI CAGNNNCTG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 972
RsaI GTAC 5 cut(s) 456, 564, 630, 702, 1050
RsaNI GTAC 5 cut(s) 455, 563, 629, 701, 1049
RseI CAYNNNNRTG 3 cut(s) 462, 965, 1330
SaqAI TTAA 4 cut(s) 224, 297, 933, 1073
SatI GCNGC 3 cut(s) 46, 68, 184
Sau3AI GATC 2 cut(s) 972, 1041
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 2 cut(s) 1016, 1126
SfaNI GCATC 4 cut(s) 583, 778, 826, 1194
SfcI CTRYAG 2 cut(s) 74, 98
SmiMI CAYNNNNRTG 3 cut(s) 462, 965, 1330
SmlI CTYRAG 7 cut(s) 187, 399, 441, 473, 578, 1152, 1202
SmoI CTYRAG 7 cut(s) 187, 399, 441, 473, 578, 1152, 1202
SsiI CCGC 4 cut(s) 30, 45, 791, 839
SspI AATATT 2 cut(s) 707, 1008
SspMI CTAG 6 cut(s) 326, 354, 380, 777, 942, 1230
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 4 cut(s) 353, 941, 966, 990
TaaI ACNGT 1 cut(s) 198
TaiI ACGT 1 cut(s) 540
TaqI TCGA 3 cut(s) 212, 882, 1330
TaqII GACCGA 1 cut(s) 154
TatI WGTACW 2 cut(s) 454, 628
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 521, 752
Tru1I TTAA 4 cut(s) 224, 297, 933, 1073
Tru9I TTAA 4 cut(s) 224, 297, 933, 1073
TseI GCWGC 2 cut(s) 67, 183
Van91I CCANNNNNTGG 2 cut(s) 1076, 1285
XapI RAATTY 1 cut(s) 362
XmaJI CCTAGG 2 cut(s) 353, 941
XmnI GAANNNNTTC 1 cut(s) 362
XspI CTAG 6 cut(s) 326, 354, 380, 777, 942, 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.