Rroxscaffold_1G00031320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000195
Physical Location & Seq
Reverse (-)
44021209 .. 44026957
5749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031320.1

Sequence Viewer

Length: 489 bp
ATGATAAAATATGGGGAAGAAGTTTCACCATACAAAGGAAGGAGCCTCCCAGGCTCGGATCAATGGAGCTATGGATGGGAAGATCCGAGAGGATATGAGCAAAAAAGTTTCTATGGTGGAGGTCACCAAGAGTGGAGTTCTTATGCGGGAGGTTCTATGTCCTCTTGCAATGAAACTTGTGCTTTGTGTAATTCTCCGTGGCATTCACCTTTTGAGTGCTCTTTGAGATTTGAGTGCCCGGATTTTATGCAAGAGTGTGAGTACAAGATGGACATGTATCAAGAGACATTTGTACCCAATGCATATTCACAAGATGAAGCTTATGAGCCTAGGAAGGAATTCGTTGAAGGACTACTAGCCCAATTGCAAGCCTCCCGAGATCTTTTGCATGCCTCTCAAGCTAGGATCTCACAAGAGACCATGGTCCCGAAGCATATCCTCATGAGCAAGTGTATGAGTCTAGGAAGCCTTCTCTTGAAGAATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.54

Weight (kDa)

4.97

Isoelectric Point (pI)

75.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 146
AclWI GGATC 3 cut(s) 66, 77, 413
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 2 cut(s) 263, 294
AfiI CCNNNNNNNGG 2 cut(s) 35, 55
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 347, 478
AjnI CCWGG 1 cut(s) 49
AluBI AGCT 3 cut(s) 69, 320, 401
AluI AGCT 3 cut(s) 69, 320, 401
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 278, 410
AlwI GGATC 3 cut(s) 66, 77, 413
Ama87I CYCGRG 1 cut(s) 375
ApoI RAATTY 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 338
AspA2I CCTAGG 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 424
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 3 cut(s) 18, 116, 198
AvaI CYCGRG 1 cut(s) 375
AvaII GGWCC 1 cut(s) 424
AvrII CCTAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 239
BaeI ACNNNNGTAYC 2 cut(s) 276, 309
Bbv12I GWGCWC 1 cut(s) 221
BccI CCATC 2 cut(s) 69, 262
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 278, 410
BfaI CTAG 5 cut(s) 330, 356, 402, 461, 487
BglI GCCNNNNNGGC 1 cut(s) 51
BglII AGATCT 1 cut(s) 379
BlnI CCTAGG 1 cut(s) 329
Bme1390I CCNGG 2 cut(s) 51, 239
Bme18I GGWCC 1 cut(s) 424
BmeT110I CYCGRG 1 cut(s) 375
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 2 cut(s) 44, 426
BmrFI CCNGG 2 cut(s) 51, 239
BoxI GACNNNNGTC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 239
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 4 cut(s) 49, 197, 329, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 55
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 51
BseDI CCNNGG 4 cut(s) 49, 197, 329, 420
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 2 cut(s) 35, 55
BseMI GCAATG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 375
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 2 cut(s) 35, 55
BsmAI GTCTC 2 cut(s) 278, 410
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 202
Bso31I GGTCTC 1 cut(s) 410
BsoBI CYCGRG 1 cut(s) 375
Bsp1286I GDGCHC 2 cut(s) 221, 239
Bsp143I GATC 4 cut(s) 58, 82, 379, 405
Bsp19I CCATGG 1 cut(s) 420
BspACI CCGC 1 cut(s) 146
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 44, 426
BspPI GGATC 3 cut(s) 66, 77, 413
BspTNI GGTCTC 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 175
BssECI CCNNGG 4 cut(s) 49, 197, 329, 420
BssMI GATC 4 cut(s) 58, 82, 379, 405
BssT1I CCWWGG 2 cut(s) 329, 420
Bst2UI CCWGG 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 369, 390
BstDSI CCRYGG 2 cut(s) 197, 420
BstEII GGTNACC 1 cut(s) 122
BstF5I GGATG 1 cut(s) 80
BstKTI GATC 4 cut(s) 61, 85, 382, 408
BstMAI GTCTC 2 cut(s) 278, 410
BstMBI GATC 4 cut(s) 58, 82, 379, 405
BstMWI GCNNNNNNNGC 2 cut(s) 51, 398
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 2 cut(s) 277, 392
BstPAI GACNNNNGTC 1 cut(s) 422
BstPI GGTNACC 1 cut(s) 122
BstSCI CCNGG 2 cut(s) 49, 237
BstSLI GKGCMC 1 cut(s) 239
BstX2I RGATCY 3 cut(s) 82, 379, 405
BstYI RGATCY 3 cut(s) 82, 379, 405
BtgI CCRYGG 2 cut(s) 197, 420
BtsCI GGATG 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 369, 390
CciI TCATGA 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 262, 293
CviAII CATG 4 cut(s) 274, 389, 421, 442
CviJI RGCY 9 cut(s) 45, 54, 69, 320, 328, 359, 371, 401, 468
CviKI_1 RGCY 9 cut(s) 45, 54, 69, 320, 328, 359, 371, 401, 468
CviQI GTAC 2 cut(s) 262, 293
DpnI GATC 4 cut(s) 60, 84, 381, 407
DpnII GATC 4 cut(s) 58, 82, 379, 405
Eco130I CCWWGG 2 cut(s) 329, 420
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 424
Eco88I CYCGRG 1 cut(s) 375
Eco91I GGTNACC 1 cut(s) 122
EcoO65I GGTNACC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 329, 420
EcoT22I ATGCAT 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 329, 420
FaeI CATG 4 cut(s) 277, 392, 424, 445
FaqI GGGAC 1 cut(s) 410
FatI CATG 4 cut(s) 273, 388, 420, 441
FauI CCCGC 1 cut(s) 139
FokI GGATG 1 cut(s) 87
FspBI CTAG 5 cut(s) 330, 356, 402, 461, 487
HapII CCGG 1 cut(s) 239
Hin1II CATG 4 cut(s) 277, 392, 424, 445
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 457
HpaII CCGG 1 cut(s) 239
HphI GGTGA 3 cut(s) 18, 116, 198
Hpy188I TCNGA 2 cut(s) 58, 87
Hpy188III TCNNGA 5 cut(s) 281, 375, 427, 442, 475
HpyAV CCTTC 4 cut(s) 33, 328, 341, 479
HpyCH4V TGCA 5 cut(s) 168, 250, 302, 367, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 398
Hsp92II CATG 4 cut(s) 277, 392, 424, 445
Kzo9I GATC 4 cut(s) 58, 82, 379, 405
LmnI GCTCC 2 cut(s) 42, 66
LpnPI CCDG 3 cut(s) 36, 63, 252
MaeI CTAG 5 cut(s) 330, 356, 402, 461, 487
MaeIII GTNAC 1 cut(s) 122
MalI GATC 4 cut(s) 60, 84, 381, 407
MboI GATC 4 cut(s) 58, 82, 379, 405
MboII GAAGA 2 cut(s) 29, 92
MfeI CAATTG 1 cut(s) 362
MflI RGATCY 3 cut(s) 82, 379, 405
MhlI GDGCHC 2 cut(s) 221, 239
MluCI AATT 4 cut(s) 190, 338, 362, 481
MlyI GAGTC 1 cut(s) 466
MnlI CCTC 8 cut(s) 56, 83, 113, 143, 172, 382, 403, 449
Mph1103I ATGCAT 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 338
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 51, 239
MunI CAATTG 1 cut(s) 362
Mva1269I GAATGC 1 cut(s) 202
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 51, 398
NciI CCSGG 1 cut(s) 239
NcoI CCATGG 1 cut(s) 420
NdeII GATC 4 cut(s) 58, 82, 379, 405
NlaIII CATG 4 cut(s) 277, 392, 424, 445
NlaIV GGNNCC 2 cut(s) 44, 426
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 2 cut(s) 277, 392
PaeI GCATGC 1 cut(s) 392
PagI TCATGA 1 cut(s) 441
PciI ACATGT 1 cut(s) 273
PctI GAATGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 338
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PscI ACATGT 1 cut(s) 273
PshAI GACNNNNGTC 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 49
PspEI GGTNACC 1 cut(s) 122
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 44, 426
PspPI GGNCC 1 cut(s) 424
PsuI RGATCY 3 cut(s) 82, 379, 405
RsaI GTAC 2 cut(s) 263, 294
RsaNI GTAC 2 cut(s) 262, 293
Sau3AI GATC 4 cut(s) 58, 82, 379, 405
Sau96I GGNCC 1 cut(s) 424
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 2 cut(s) 51, 239
SduI GDGCHC 2 cut(s) 221, 239
SetI ASST 6 cut(s) 71, 124, 154, 211, 322, 403
SinI GGWCC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
SphI GCATGC 1 cut(s) 392
Sse9I AATT 4 cut(s) 190, 338, 362, 481
SsiI CCGC 1 cut(s) 146
SspMI CTAG 5 cut(s) 330, 356, 402, 461, 487
StyD4I CCNGG 2 cut(s) 49, 237
StyI CCWWGG 2 cut(s) 329, 420
TasI AATT 4 cut(s) 190, 338, 362, 481
TatI WGTACW 1 cut(s) 261
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 186, 330
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 1 cut(s) 338
XceI RCATGY 2 cut(s) 277, 392
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 5 cut(s) 330, 356, 402, 461, 487
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.