Rmu_sc0006986.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006986.1
OG0000195
Physical Location & Seq
Reverse (-)
62327 .. 63724
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006986.1_g000020.1.cds

Sequence Viewer

Length: 1236 bp
atgtcctcttgcaatggaacttgtgctttgtgtaattctccatggcattcacgttttgagtgctctatgagatttgaatgcccaaattttatgcaagagcgtgagtacatgtatcaagagacatttgtactcgacgtatatccacaaaatgaagcttacgagcctaggaaggaattcgttgaaggactactagctcaattgcaagcctcccaagatctattacaagcctctcaagctagaatttcacaagataccatggtttccgaagcatattctcatgagcaagtgtatgagtctaggaggccttctcttgaagaattgctagctcaattgcaaacatccgaagctcgattgcaagcttctcaagaaatgcttatacattccaatgagcaacttgaagcaaaagtgtatgtcgagcatcttgagcaagaatcctttatgcaagttgaaaatgatgatagtgatgttgataaatctaagcttccaaatggagtagagatatttgaagatgattccgaagaagaggatgtcttgtctagtgaggaggatgtggagcttgaagttatacatcaaaatcccttgttcatcgaggaggatgtggagcttcaagtcatataccataatcccttattcattgaggtcgatattcccatggaggaaaagagtccttcaatactttgtgatgatgaagaaattgaagagccaaggactttattgcctcctacatccatggagatccatcatgagcttcccaaggtggagagtagaacattgagcacttatgttcttaatgagaggattgggatcaaggtacttttacctcccaatctaccattaagtggtcaatgtttctacaatgaggtgatagattggaaaggaaatggagcatttgcactcaccctttcccatcactttcaagagcttctaccacctattgttcctatgagcatcaattctataccacttgagaaggagaaggcaaggatattgattcctagaagaaaaattgagaagaagaggaatattaagaagctacacttttggtcaccaattggattattcatggatagctcttggtcttgtctctatgatacatcaatgagtcccttagcccaaataatagggtggttgtacttgagatgtatacaccttgacaagatcatgttctatggaccagcaatgaaatctttaaacaaagtgctcgcaagggaggcaaccctagcacatcatcggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

411

Amino Acids

47.62

Weight (kDa)

4.73

Isoelectric Point (pI)

65.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 839
AccI GTMKAC 1 cut(s) 1144
AclWI GGATC 2 cut(s) 730, 812
AcsI RAATTY 3 cut(s) 85, 173, 240
AfaI GTAC 4 cut(s) 107, 129, 813, 1133
AfiI CCNNNNNNNGG 1 cut(s) 839
AflIII ACRYGT 1 cut(s) 108
Alw21I GWGCWC 3 cut(s) 65, 779, 1203
Alw26I GTCTC 2 cut(s) 113, 1088
AlwI GGATC 2 cut(s) 730, 812
AoxI GGCC 1 cut(s) 302
ApoI RAATTY 3 cut(s) 85, 173, 240
Asp700I GAANNNNTTC 1 cut(s) 173
AspA2I CCTAGG 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 1172
AsuHPI GGTGA 3 cut(s) 874, 889, 1038
AsuNHI GCTAGC 1 cut(s) 322
AvaII GGWCC 1 cut(s) 1172
AvrII CCTAGG 1 cut(s) 164
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
Bbv12I GWGCWC 3 cut(s) 65, 779, 1203
BccI CCATC 2 cut(s) 747, 915
BcoDI GTCTC 2 cut(s) 113, 1088
BfaI CTAG 8 cut(s) 165, 191, 237, 297, 323, 537, 996, 1220
BglII AGATCT 1 cut(s) 214
BlnI CCTAGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 1172
BmgT120I GGNCC 1 cut(s) 1172
BmsI GCATC 2 cut(s) 427, 957
BmtI GCTAGC 1 cut(s) 326
BplI GAGNNNNNCTC 2 cut(s) 292, 324
Bpu10I CCTNAGC 1 cut(s) 1108
BpuEI CTTGAG 5 cut(s) 216, 348, 443, 986, 1156
BsaBI GATNNNNATC 1 cut(s) 803
BsaJI CCNNGG 7 cut(s) 41, 164, 255, 651, 704, 729, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 839
Bse3DI GCAATG 2 cut(s) 19, 1185
Bse8I GATNNNNATC 1 cut(s) 803
BseDI CCNNGG 7 cut(s) 41, 164, 255, 651, 704, 729, 753
BseGI GGATG 5 cut(s) 338, 532, 553, 601, 725
BseJI GATNNNNATC 1 cut(s) 803
BseLI CCNNNNNNNGG 1 cut(s) 839
BseMI GCAATG 2 cut(s) 19, 1185
BseRI GAGGAG 2 cut(s) 557, 605
BshFI GGCC 1 cut(s) 304
BsiHKAI GWGCWC 3 cut(s) 65, 779, 1203
BslFI GGGAC 1 cut(s) 1089
BslI CCNNNNNNNGG 1 cut(s) 839
BsmAI GTCTC 2 cut(s) 113, 1088
BsmFI GGGAC 1 cut(s) 1089
BsmI GAATGC 2 cut(s) 46, 83
BsnI GGCC 1 cut(s) 304
Bsp1286I GDGCHC 3 cut(s) 65, 779, 1203
Bsp143I GATC 4 cut(s) 214, 735, 804, 1158
Bsp19I CCATGG 4 cut(s) 41, 255, 651, 729
BspANI GGCC 1 cut(s) 304
BspHI TCATGA 2 cut(s) 277, 742
BspOI GCTAGC 1 cut(s) 326
BspPI GGATC 2 cut(s) 730, 812
BspQI GCTCTTC 1 cut(s) 693
BsrDI GCAATG 2 cut(s) 19, 1185
BssECI CCNNGG 7 cut(s) 41, 164, 255, 651, 704, 729, 753
BssMI GATC 4 cut(s) 214, 735, 804, 1158
BssNAI GTATAC 1 cut(s) 1145
BssT1I CCWWGG 7 cut(s) 41, 164, 255, 651, 704, 729, 753
Bst1107I GTATAC 1 cut(s) 1145
Bst6I CTCTTC 3 cut(s) 516, 693, 1010
BstC8I GCNNGC 4 cut(s) 204, 324, 357, 1203
BstDEI CTNAG 2 cut(s) 477, 1108
BstDSI CCRYGG 4 cut(s) 41, 255, 651, 729
BstEII GGTNACC 1 cut(s) 1044
BstF5I GGATG 5 cut(s) 338, 532, 553, 601, 725
BstKTI GATC 4 cut(s) 217, 738, 807, 1161
BstMAI GTCTC 2 cut(s) 113, 1088
BstMBI GATC 4 cut(s) 214, 735, 804, 1158
BstMWI GCNNNNNNNGC 4 cut(s) 233, 424, 1211, 1220
BstNSI RCATGY 1 cut(s) 112
BstPI GGTNACC 1 cut(s) 1044
BstX2I RGATCY 2 cut(s) 214, 735
BstYI RGATCY 2 cut(s) 214, 735
BstZ17I GTATAC 1 cut(s) 1145
BsuRI GGCC 1 cut(s) 304
BtgI CCRYGG 4 cut(s) 41, 255, 651, 729
BtsCI GGATG 5 cut(s) 338, 532, 553, 601, 725
Cac8I GCNNGC 4 cut(s) 204, 324, 357, 1203
CciI TCATGA 2 cut(s) 277, 742
Cfr13I GGNCC 1 cut(s) 1172
Csp6I GTAC 4 cut(s) 106, 128, 812, 1132
CviAII CATG 9 cut(s) 42, 109, 256, 278, 652, 730, 743, 1063, 1162
CviQI GTAC 4 cut(s) 106, 128, 812, 1132
DdeI CTNAG 2 cut(s) 477, 1108
DpnI GATC 4 cut(s) 216, 737, 806, 1160
DpnII GATC 4 cut(s) 214, 735, 804, 1158
DraI TTTAAA 1 cut(s) 1191
Eam1104I CTCTTC 3 cut(s) 516, 693, 1010
EarI CTCTTC 3 cut(s) 516, 693, 1010
Eco130I CCWWGG 7 cut(s) 41, 164, 255, 651, 704, 729, 753
Eco147I AGGCCT 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 1172
Eco91I GGTNACC 1 cut(s) 1044
EcoO65I GGTNACC 1 cut(s) 1044
EcoRI GAATTC 1 cut(s) 173
EcoT14I CCWWGG 7 cut(s) 41, 164, 255, 651, 704, 729, 753
ErhI CCWWGG 7 cut(s) 41, 164, 255, 651, 704, 729, 753
FaeI CATG 9 cut(s) 45, 112, 259, 281, 655, 733, 746, 1066, 1165
FalI AAGNNNNNCTT 4 cut(s) 357, 389, 1022, 1054
FaqI GGGAC 1 cut(s) 1089
FatI CATG 9 cut(s) 41, 108, 255, 277, 651, 729, 742, 1062, 1161
FblI GTMKAC 1 cut(s) 1144
FokI GGATG 5 cut(s) 325, 539, 560, 608, 712
FspBI CTAG 8 cut(s) 165, 191, 237, 297, 323, 537, 996, 1220
HaeIII GGCC 1 cut(s) 304
Hin1II CATG 9 cut(s) 45, 112, 259, 281, 655, 733, 746, 1066, 1165
HindIII AAGCTT 3 cut(s) 153, 357, 479
HinfI GANTC 6 cut(s) 293, 431, 512, 664, 991, 1102
HphI GGTGA 3 cut(s) 874, 889, 1038
Hpy166II GTNNAC 1 cut(s) 1145
Hpy188I TCNGA 3 cut(s) 265, 343, 517
Hpy188III TCNNGA 7 cut(s) 116, 278, 311, 365, 422, 743, 917
Hpy8I GTNNAC 1 cut(s) 1145
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 6 cut(s) 163, 176, 315, 678, 964, 970
HpyCH4IV ACGT 2 cut(s) 52, 135
HpyCH4V TGCA 7 cut(s) 12, 94, 202, 334, 355, 442, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 424, 1211, 1220
HpyF3I CTNAG 2 cut(s) 477, 1108
HpySE526I ACGT 2 cut(s) 52, 135
Hsp92II CATG 9 cut(s) 45, 112, 259, 281, 655, 733, 746, 1066, 1165
Kzo9I GATC 4 cut(s) 214, 735, 804, 1158
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 3 cut(s) 553, 601, 884
LpnPI CCDG 1 cut(s) 1188
LweI GCATC 2 cut(s) 427, 957
MaeI CTAG 8 cut(s) 165, 191, 237, 297, 323, 537, 996, 1220
MaeII ACGT 2 cut(s) 52, 135
MaeIII GTNAC 1 cut(s) 1044
MalI GATC 4 cut(s) 216, 737, 806, 1160
MboI GATC 4 cut(s) 214, 735, 804, 1158
MboII GAAGA 9 cut(s) 326, 518, 530, 533, 701, 710, 1011, 1024, 1027
MfeI CAATTG 3 cut(s) 197, 329, 1050
MflI RGATCY 2 cut(s) 214, 735
MhlI GDGCHC 3 cut(s) 65, 779, 1203
MlyI GAGTC 3 cut(s) 302, 673, 1111
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 4 cut(s) 789, 836, 1026, 1190
MslI CAYNNNNRTG 1 cut(s) 384
MunI CAATTG 3 cut(s) 197, 329, 1050
Mva1269I GAATGC 2 cut(s) 46, 83
MwoI GCNNNNNNNGC 4 cut(s) 233, 424, 1211, 1220
NcoI CCATGG 4 cut(s) 41, 255, 651, 729
NdeII GATC 4 cut(s) 214, 735, 804, 1158
NheI GCTAGC 1 cut(s) 322
NlaIII CATG 9 cut(s) 45, 112, 259, 281, 655, 733, 746, 1066, 1165
NmuCI GTSAC 1 cut(s) 1044
NspI RCATGY 1 cut(s) 112
PagI TCATGA 2 cut(s) 277, 742
PceI AGGCCT 1 cut(s) 304
PciI ACATGT 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 693
PctI GAATGC 2 cut(s) 46, 83
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 431, 512, 991
PflMI CCANNNNNTGG 1 cut(s) 839
PleI GAGTC 3 cut(s) 301, 672, 1110
PpsI GAGTC 3 cut(s) 301, 672, 1110
PscI ACATGT 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 1044
PspPI GGNCC 1 cut(s) 1172
PsuI RGATCY 2 cut(s) 214, 735
RsaI GTAC 4 cut(s) 107, 129, 813, 1133
RsaNI GTAC 4 cut(s) 106, 128, 812, 1132
RseI CAYNNNNRTG 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 4 cut(s) 789, 836, 1026, 1190
Sau3AI GATC 4 cut(s) 214, 735, 804, 1158
Sau96I GGNCC 1 cut(s) 1172
SchI GAGTC 3 cut(s) 302, 673, 1111
SduI GDGCHC 3 cut(s) 65, 779, 1203
SfaNI GCATC 2 cut(s) 427, 957
SinI GGWCC 1 cut(s) 1172
SmiMI CAYNNNNRTG 1 cut(s) 384
SmlI CTYRAG 5 cut(s) 231, 363, 422, 965, 1135
SmoI CTYRAG 5 cut(s) 231, 363, 422, 965, 1135
SseBI AGGCCT 1 cut(s) 304
SspI AATATT 1 cut(s) 1024
SspMI CTAG 8 cut(s) 165, 191, 237, 297, 323, 537, 996, 1220
StuI AGGCCT 1 cut(s) 304
StyI CCWWGG 7 cut(s) 41, 164, 255, 651, 704, 729, 753
TaiI ACGT 2 cut(s) 55, 138
TaqI TCGA 5 cut(s) 132, 349, 414, 588, 642
TatI WGTACW 3 cut(s) 105, 127, 1131
TfiI GAWTC 3 cut(s) 431, 512, 991
Tru1I TTAA 4 cut(s) 789, 836, 1026, 1190
Tru9I TTAA 4 cut(s) 789, 836, 1026, 1190
TseFI GTSAC 1 cut(s) 1044
Tsp45I GTSAC 1 cut(s) 1044
TspDTI ATGAA 6 cut(s) 165, 574, 622, 702, 1051, 1196
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 1 cut(s) 1172
XapI RAATTY 3 cut(s) 85, 173, 240
XceI RCATGY 1 cut(s) 112
XmaJI CCTAGG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 1144
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 8 cut(s) 165, 191, 237, 297, 323, 537, 996, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.