Rw1G003000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000195
Physical Location & Seq
Forward (+)
5486940 .. 5487686
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003000.1

Sequence Viewer

Length: 747 bp
ATGGATCGATGGAGCTATGGATGGGAAGATCCGAGAGGATATGAGCAAGAAAGTTTCTATGGTGGAGGTCATCAAGAGTGGAATTCTCATGCGGTGGGTTCTATGTCCTCTTGCAATGAAATTTGTGCTTTGTGCAATTCTCCTTGGCATTCACCTTTTGAGTGCTCTTTGAGATTTGAGTGCCTAGGTTTTATGCAAGAGTGTGAGTACAAGATGGGCATGTATCAAGAGACATTTATACCCAATGCATATCCACAAGAAGAAGCTTATGAGCCTAGTAAGGAATTTGTTGACGGACTACTAGCTCAATTGCACGCCTCCCAAGCTCTATTACAAGCCTCTCAAGTTAGTATTTCACAAGAGACCATGGTTCCCGAAGCATATCCTCATGAGCAAGCATATGAGTCTAGGAGGCCTTCTCTTGAAGAATTGCTAGCTCAATTGCAAGCCTCCCAAGCCCACTTGCAAGCCTCCCAAGCTCGATTGCAAGCTTCACAAGAGATGCTTATACATTCCAACGAGCAACTTAAGGCTAGTCTTGCACAAGAGTCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAGTGGAGCCTATTTCAAGAGAAGAAGTGTATATCAAGCATCTTGAGCAAGACTCTTGTATTCAAGTTGAAGATGATGATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTTCAATGCAAATGAGGTGAGAGACTACACTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

28.49

Weight (kDa)

4.29

Isoelectric Point (pI)

74.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 12, 23
AcsI RAATTY 3 cut(s) 82, 120, 284
AfaI GTAC 2 cut(s) 209, 684
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 5 cut(s) 425, 606, 653, 659, 715
AjuI GAANNNNNNNTTGG 2 cut(s) 681, 713
AluBI AGCT 8 cut(s) 15, 266, 305, 326, 437, 479, 491, 697
AluI AGCT 8 cut(s) 15, 266, 305, 326, 437, 479, 491, 697
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 3 cut(s) 224, 356, 726
AlwI GGATC 2 cut(s) 12, 23
AoxI GGCC 1 cut(s) 413
ApoI RAATTY 3 cut(s) 82, 120, 284
AspA2I CCTAGG 1 cut(s) 184
AsuHPI GGTGA 4 cut(s) 144, 543, 550, 739
AsuNHI GCTAGC 1 cut(s) 433
AvrII CCTAGG 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 3 cut(s) 3, 15, 208
BcoDI GTCTC 3 cut(s) 224, 356, 726
BfaI CTAG 6 cut(s) 185, 276, 302, 408, 434, 534
BfrI CTTAAG 1 cut(s) 527
BlnI CCTAGG 1 cut(s) 184
BmiI GGNNCC 2 cut(s) 372, 597
BmsI GCATC 2 cut(s) 492, 637
BmtI GCTAGC 1 cut(s) 437
BplI GAGNNNNNCTC 4 cut(s) 403, 435, 626, 658
BpuEI CTTGAG 2 cut(s) 327, 653
Bsa29I ATCGAT 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 3 cut(s) 143, 184, 366
Bse3DI GCAATG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 143, 184, 366
BseGI GGATG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 121
BshFI GGCC 1 cut(s) 415
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 167
BsmAI GTCTC 3 cut(s) 224, 356, 726
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 415
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 682
Bsp143I GATC 2 cut(s) 4, 28
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 7
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 372, 597
BspOI GCTAGC 1 cut(s) 437
BspPI GGATC 2 cut(s) 12, 23
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 682
BssECI CCNNGG 3 cut(s) 143, 184, 366
BssMI GATC 2 cut(s) 4, 28
BssT1I CCWWGG 3 cut(s) 143, 184, 366
BstAFI CTTAAG 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 682
BstC8I GCNNGC 6 cut(s) 315, 396, 435, 447, 468, 489
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 2 cut(s) 7, 31
BstMAI GTCTC 3 cut(s) 224, 356, 726
BstMBI GATC 2 cut(s) 4, 28
BstMWI GCNNNNNNNGC 5 cut(s) 323, 455, 476, 539, 634
BstNSI RCATGY 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 1 cut(s) 415
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 6 cut(s) 315, 396, 435, 447, 468, 489
CciI TCATGA 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 2 cut(s) 208, 683
CviAII CATG 5 cut(s) 89, 220, 367, 389, 572
CviQI GTAC 2 cut(s) 208, 683
DpnI GATC 2 cut(s) 6, 30
DpnII GATC 2 cut(s) 4, 28
Eco130I CCWWGG 3 cut(s) 143, 184, 366
Eco147I AGGCCT 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 3 cut(s) 143, 184, 366
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 3 cut(s) 143, 184, 366
FaeI CATG 5 cut(s) 92, 223, 370, 392, 575
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 5 cut(s) 88, 219, 366, 388, 571
FauNDI CATATG 1 cut(s) 400
FokI GGATG 1 cut(s) 33
FspBI CTAG 6 cut(s) 185, 276, 302, 408, 434, 534
HaeIII GGCC 1 cut(s) 415
Hin1II CATG 5 cut(s) 92, 223, 370, 392, 575
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 2 cut(s) 264, 489
HinfI GANTC 4 cut(s) 404, 548, 575, 641
HphI GGTGA 4 cut(s) 144, 543, 550, 739
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 7 cut(s) 74, 227, 374, 389, 422, 606, 632
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 2 cut(s) 426, 565
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 455, 476, 539, 634
Hsp92II CATG 5 cut(s) 92, 223, 370, 392, 575
Kzo9I GATC 2 cut(s) 4, 28
LmnI GCTCC 2 cut(s) 12, 595
LweI GCATC 2 cut(s) 492, 637
MaeI CTAG 6 cut(s) 185, 276, 302, 408, 434, 534
MaeIII GTNAC 1 cut(s) 549
MalI GATC 2 cut(s) 6, 30
MboI GATC 2 cut(s) 4, 28
MboII GAAGA 5 cut(s) 38, 272, 437, 623, 671
MfeI CAATTG 2 cut(s) 308, 440
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 7 cut(s) 82, 120, 136, 284, 308, 428, 440
MlyI GAGTC 3 cut(s) 413, 557, 635
MmeI TCCRAC 1 cut(s) 540
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 1 cut(s) 528
MspCI CTTAAG 1 cut(s) 527
MunI CAATTG 2 cut(s) 308, 440
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 5 cut(s) 323, 455, 476, 539, 634
NcoI CCATGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 400
NdeII GATC 2 cut(s) 4, 28
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 5 cut(s) 92, 223, 370, 392, 575
NlaIV GGNNCC 2 cut(s) 372, 597
NmuCI GTSAC 1 cut(s) 549
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 1 cut(s) 223
PagI TCATGA 1 cut(s) 388
PceI AGGCCT 1 cut(s) 415
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 575
PleI GAGTC 3 cut(s) 412, 556, 635
PpsI GAGTC 3 cut(s) 412, 556, 635
PspN4I GGNNCC 2 cut(s) 372, 597
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 2 cut(s) 209, 684
RsaNI GTAC 2 cut(s) 208, 683
SaqAI TTAA 1 cut(s) 528
Sau3AI GATC 2 cut(s) 4, 28
SchI GAGTC 3 cut(s) 413, 557, 635
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 2 cut(s) 492, 637
SmlI CTYRAG 3 cut(s) 342, 527, 632
SmoI CTYRAG 3 cut(s) 342, 527, 632
Sse9I AATT 7 cut(s) 82, 120, 136, 284, 308, 428, 440
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 1 cut(s) 92
SspMI CTAG 6 cut(s) 185, 276, 302, 408, 434, 534
StuI AGGCCT 1 cut(s) 415
StyI CCWWGG 3 cut(s) 143, 184, 366
TaqI TCGA 2 cut(s) 7, 481
TasI AATT 7 cut(s) 82, 120, 136, 284, 308, 428, 440
TatI WGTACW 2 cut(s) 207, 682
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TseFI GTSAC 1 cut(s) 549
Tsp45I GTSAC 1 cut(s) 549
TspDTI ATGAA 3 cut(s) 132, 588, 720
TspGWI ACGGA 1 cut(s) 309
Vha464I CTTAAG 1 cut(s) 527
XapI RAATTY 3 cut(s) 82, 120, 284
XceI RCATGY 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 184
XspI CTAG 6 cut(s) 185, 276, 302, 408, 434, 534
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.