Rroxscaffold_2G00114380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000195
Physical Location & Seq
Forward (+)
40428289 .. 40428657
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114380.1

Sequence Viewer

Length: 369 bp
ATGTCTTCTTGCAATGAACCTTGTGTTTTGTGTAATTCTCTGTGGCATTCACCTTTTGAGTGCTCTTTGAGATTTGAGTGCCTGGATTTTATGCAAGAGTATGAGTACAAGATGAGTGTGTATCAAGAGACATTTGTACCCGATGCATATCCACAAGATGATGCTTATGAGCCTAGGAAGGTATTCGTTGAAGGACTACTACCTCAATTGCAAGCTTCCCAAGCTCTATTACAAGCCTCTCAAGCTAGAATTTCACAAGAGACCATGGTTCCCAAAGCATATTCTCATGAGCAAGTGTATGAGTCTAGGAGGTCTTCTCTTGAAGAATTGCTAGCTCAATTGCAAGCATCCCAAGCATCCTTAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.06

Weight (kDa)

4.49

Isoelectric Point (pI)

86.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 2 cut(s) 107, 138
AgsI TTSAA 2 cut(s) 191, 323
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 4 cut(s) 215, 224, 245, 335
AluI AGCT 4 cut(s) 215, 224, 245, 335
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 122, 254
ApoI RAATTY 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 182
AspA2I CCTAGG 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 42
AsuNHI GCTAGC 1 cut(s) 331
AvrII CCTAGG 1 cut(s) 173
BaeI ACNNNNGTAYC 2 cut(s) 120, 153
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 65
BciT130I CCWGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 122, 254
BfaI CTAG 4 cut(s) 174, 246, 306, 332
BlnI CCTAGG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 4 cut(s) 133, 151, 356, 365
BmtI GCTAGC 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 306
BplI GAGNNNNNCTC 2 cut(s) 301, 333
BpuEI CTTGAG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 173, 264
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 2 cut(s) 173, 264
BseGI GGATG 2 cut(s) 347, 356
BseJI GATNNNNATC 1 cut(s) 147
BseMI GCAATG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 65
BsmAI GTCTC 2 cut(s) 122, 254
BsmI GAATGC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 264
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 173, 264
BssT1I CCWWGG 2 cut(s) 173, 264
Bst2UI CCWGG 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 213, 333, 345
BstDEI CTNAG 1 cut(s) 361
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 347, 356
BstMAI GTCTC 2 cut(s) 122, 254
BstMWI GCNNNNNNNGC 3 cut(s) 221, 242, 353
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 2 cut(s) 347, 356
Cac8I GCNNGC 3 cut(s) 213, 333, 345
CciI TCATGA 1 cut(s) 286
Csp6I GTAC 2 cut(s) 106, 137
CviAII CATG 2 cut(s) 265, 287
CviJI RGCY 6 cut(s) 172, 215, 224, 236, 245, 335
CviKI_1 RGCY 6 cut(s) 172, 215, 224, 236, 245, 335
CviQI GTAC 2 cut(s) 106, 137
DdeI CTNAG 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 173, 264
Eco31I GGTCTC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 81
EcoT14I CCWWGG 2 cut(s) 173, 264
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 2 cut(s) 173, 264
FaeI CATG 2 cut(s) 268, 290
FaiI YATR 8 cut(s) 92, 102, 148, 168, 266, 280, 288, 300
FatI CATG 2 cut(s) 264, 286
FokI GGATG 2 cut(s) 334, 343
FspBI CTAG 4 cut(s) 174, 246, 306, 332
Hin1II CATG 2 cut(s) 268, 290
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 1 cut(s) 302
HphI GGTGA 1 cut(s) 42
Hpy188III TCNNGA 3 cut(s) 125, 287, 320
HpyAV CCTTC 2 cut(s) 172, 185
HpyCH4V TGCA 5 cut(s) 12, 94, 146, 211, 343
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 242, 353
HpyF3I CTNAG 1 cut(s) 361
Hsp92II CATG 2 cut(s) 268, 290
LpnPI CCDG 2 cut(s) 68, 95
LweI GCATC 4 cut(s) 133, 151, 356, 365
MaeI CTAG 4 cut(s) 174, 246, 306, 332
MboII GAAGA 2 cut(s) 306, 335
MfeI CAATTG 2 cut(s) 206, 338
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 5 cut(s) 34, 206, 249, 326, 338
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 3 cut(s) 213, 247, 303
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 83
MunI CAATTG 2 cut(s) 206, 338
Mva1269I GAATGC 1 cut(s) 46
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 221, 242, 353
NcoI CCATGG 1 cut(s) 264
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 2 cut(s) 268, 290
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 148
PagI TCATGA 1 cut(s) 286
PctI GAATGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 182
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 270
RsaI GTAC 2 cut(s) 107, 138
RsaNI GTAC 2 cut(s) 106, 137
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 65
SetI ASST 9 cut(s) 22, 55, 183, 205, 217, 226, 247, 314, 337
SfaNI GCATC 4 cut(s) 133, 151, 356, 365
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 5 cut(s) 34, 206, 249, 326, 338
SspMI CTAG 4 cut(s) 174, 246, 306, 332
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 2 cut(s) 173, 264
TasI AATT 5 cut(s) 34, 206, 249, 326, 338
TatI WGTACW 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 30
XapI RAATTY 1 cut(s) 249
XmaJI CCTAGG 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 4 cut(s) 174, 246, 306, 332
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.