Rmu_sc0002132.1_g000013

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002132.1
OG0000195
Physical Location & Seq
Reverse (-)
47923 .. 52150
4228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002132.1_g000013.1.cds

Sequence Viewer

Length: 1170 bp
atgtttggccggagggcagtccacaatttgcttccaacttgggttgccttgacctctaaaggttattctggtccctttcattgtgtcatatgttctaggcaagcggaaacattggaacacttgttttgtgattgcagtatttccagagaaatctttggagctccaccattctctattccgaatagtgcttccattgtgactggtgccatggcctggcacgaggagtttttgcaagctactcaatctttgactgcttctcagcaaggtagggagaagcctcgtaagcagtgggttgctccgacagatggatgtattaagctcaatgttgatgggactttcttgccttcagttcagtttggtggaacaaggctattagccttgaagaatggattggagttgcagcaggccatgtttaggccatcatcgaaagtgactgcttacttgcatgaggtgggagactacacttcggaggaatgggtacaatattggaaatctaagcttccaaatgaaggggagatacttgaagatgattccgaagaggaggatgacttgtctagtgaggaggatgtggaatttgaagttatacaccataatcccttgttcattgaggaggatgcggagcttgaagtcatataccataatcccttattcattgaggccgatattcccatggaggaagagagtctttcactagcttgtgatgatgaagaaattgaagagccaaagactttctctcctcccacatccatggagatccatcatgagcttcccaaggtggagagtagaacattgagcacttatgtttttaatgagaggattgggatcaaggtacttttacatctcaatccaccattaagtggccaatgtttctacaatgaggtgatggattggaaagaaaatggagcacttgcactcaccctttcccatcactctcaagagcttctaccagctatttttcctatgagaatcatttctacaccacttttgaaggagaaggcaaggatagctcctagaagaaaaattgagaagaatgggaggattaagaagcttcatttttgggaaccaattggaacattcatggatagctcttggtcttgtctctatgatacatcaaggagtcctttagccccaaacaatagggtggtcgcacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

389

Amino Acids

44.23

Weight (kDa)

5.03

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccB7I CCANNNNNTGG 2 cut(s) 213, 857
AciI CCGC 2 cut(s) 104, 617
AclWI GGATC 2 cut(s) 748, 830
AcoI YGGCCR 2 cut(s) 7, 859
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 2 cut(s) 480, 831
AfiI CCNNNNNNNGG 5 cut(s) 213, 305, 414, 509, 857
AgsI TTSAA 6 cut(s) 382, 524, 578, 626, 716, 988
AjnI CCWGG 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
Alw21I GWGCWC 3 cut(s) 163, 797, 907
Alw26I GTCTC 2 cut(s) 450, 1103
AlwI GGATC 2 cut(s) 748, 830
AoxI GGCC 6 cut(s) 7, 210, 405, 416, 657, 859
ApeKI GCWGC 1 cut(s) 400
ApoI RAATTY 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 970
AspS9I GGNCC 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 892, 907
AvaII GGWCC 1 cut(s) 71
BalI TGGCCA 1 cut(s) 861
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 163
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BauI CACGAG 1 cut(s) 218
Bbv12I GWGCWC 3 cut(s) 163, 797, 907
BbvI GCAGC 1 cut(s) 412
BccI CCATC 6 cut(s) 299, 323, 427, 765, 877, 933
BciT130I CCWGG 1 cut(s) 214
BciVI GTATCC 1 cut(s) 1170
BcoDI GTCTC 2 cut(s) 450, 1103
BfaI CTAG 4 cut(s) 96, 555, 692, 1011
BfuI GTATCC 1 cut(s) 1170
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 71
BmiI GGNNCC 3 cut(s) 73, 205, 1062
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 604
BpuEI CTTGAG 1 cut(s) 918
BsaBI GATNNNNATC 1 cut(s) 821
BsaJI CCNNGG 4 cut(s) 207, 669, 747, 771
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bsc4I CCNNNNNNNGG 5 cut(s) 213, 305, 414, 509, 857
Bse1I ACTGG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 821
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 4 cut(s) 207, 669, 747, 771
BseGI GGATG 5 cut(s) 314, 550, 571, 619, 743
BseJI GATNNNNATC 1 cut(s) 821
BseLI CCNNNNNNNGG 5 cut(s) 213, 305, 414, 509, 857
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 5 cut(s) 236, 554, 575, 623, 726
BseXI GCAGC 1 cut(s) 412
BshFI GGCC 6 cut(s) 9, 212, 407, 418, 659, 861
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 3 cut(s) 163, 797, 907
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 2 cut(s) 57, 346
BslI CCNNNNNNNGG 5 cut(s) 213, 305, 414, 509, 857
BsmAI GTCTC 2 cut(s) 450, 1103
BsmFI GGGAC 2 cut(s) 57, 346
BsnI GGCC 6 cut(s) 9, 212, 407, 418, 659, 861
Bsp1286I GDGCHC 3 cut(s) 163, 797, 907
Bsp143I GATC 2 cut(s) 753, 822
Bsp19I CCATGG 3 cut(s) 207, 669, 747
BspACI CCGC 2 cut(s) 104, 617
BspANI GGCC 6 cut(s) 9, 212, 407, 418, 659, 861
BspCNI CTCAG 1 cut(s) 271
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 73, 205, 1062
BspPI GGATC 2 cut(s) 748, 830
BspQI GCTCTTC 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 4 cut(s) 207, 669, 747, 771
BssMI GATC 2 cut(s) 753, 822
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 4 cut(s) 207, 669, 747, 771
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 214
Bst6I CTCTTC 3 cut(s) 531, 672, 711
BstC8I GCNNGC 3 cut(s) 102, 234, 405
BstDEI CTNAG 2 cut(s) 258, 495
BstDSI CCRYGG 3 cut(s) 207, 669, 747
BstF5I GGATG 5 cut(s) 314, 550, 571, 619, 743
BstKTI GATC 2 cut(s) 756, 825
BstMAI GTCTC 2 cut(s) 450, 1103
BstMBI GATC 2 cut(s) 753, 822
BstMWI GCNNNNNNNGC 2 cut(s) 283, 1004
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 412
BstX2I RGATCY 1 cut(s) 753
BstXI CCANNNNNNTGG 1 cut(s) 748
BstYI RGATCY 1 cut(s) 753
BsuI GTATCC 1 cut(s) 1170
BsuRI GGCC 6 cut(s) 9, 212, 407, 418, 659, 861
BtgI CCRYGG 3 cut(s) 207, 669, 747
BtsCI GGATG 5 cut(s) 314, 550, 571, 619, 743
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 3 cut(s) 102, 234, 405
CciI TCATGA 1 cut(s) 760
Cfr13I GGNCC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 479, 830
CviAII CATG 7 cut(s) 208, 409, 446, 670, 748, 761, 1078
CviQI GTAC 2 cut(s) 479, 830
DdeI CTNAG 2 cut(s) 258, 495
DpnI GATC 2 cut(s) 755, 824
DpnII GATC 2 cut(s) 753, 822
EaeI YGGCCR 2 cut(s) 7, 859
Eam1104I CTCTTC 3 cut(s) 531, 672, 711
EarI CTCTTC 3 cut(s) 531, 672, 711
Ecl136II GAGCTC 1 cut(s) 161
Eco130I CCWWGG 4 cut(s) 207, 669, 747, 771
Eco24I GRGCYC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 71
Eco53kI GAGCTC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 212
EcoT14I CCWWGG 4 cut(s) 207, 669, 747, 771
EcoT38I GRGCYC 1 cut(s) 163
ErhI CCWWGG 4 cut(s) 207, 669, 747, 771
FaeI CATG 7 cut(s) 211, 412, 449, 673, 751, 764, 1081
FalI AAGNNNNNCTT 4 cut(s) 669, 701, 1105, 1137
FaqI GGGAC 2 cut(s) 57, 346
FatI CATG 7 cut(s) 207, 408, 445, 669, 747, 760, 1077
FauNDI CATATG 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 401
FokI GGATG 5 cut(s) 321, 557, 578, 626, 730
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 1 cut(s) 401
FspBI CTAG 4 cut(s) 96, 555, 692, 1011
GluI GCNGC 1 cut(s) 401
HaeIII GGCC 6 cut(s) 9, 212, 407, 418, 659, 861
HapII CCGG 1 cut(s) 10
Hin1II CATG 7 cut(s) 211, 412, 449, 673, 751, 764, 1081
HindIII AAGCTT 2 cut(s) 497, 1046
HinfI GANTC 4 cut(s) 530, 682, 966, 1117
HpaII CCGG 1 cut(s) 10
HphI GGTGA 2 cut(s) 892, 907
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 180, 300, 469, 535
Hpy188III TCNNGA 3 cut(s) 144, 761, 935
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 354, 503, 982, 988
HpyCH4V TGCA 5 cut(s) 135, 232, 400, 445, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 1004
HpyF3I CTNAG 2 cut(s) 258, 495
Hsp92II CATG 7 cut(s) 211, 412, 449, 673, 751, 764, 1081
Kzo9I GATC 2 cut(s) 753, 822
LguI GCTCTTC 1 cut(s) 711
LmnI GCTCC 6 cut(s) 158, 166, 301, 619, 902, 1012
LpnPI CCDG 8 cut(s) 23, 54, 157, 186, 199, 226, 389, 960
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 604
MaeI CTAG 4 cut(s) 96, 555, 692, 1011
MaeIII GTNAC 2 cut(s) 196, 430
MalI GATC 2 cut(s) 755, 824
MboI GATC 2 cut(s) 753, 822
MboII GAAGA 8 cut(s) 394, 536, 548, 689, 719, 728, 1026, 1039
MfeI CAATTG 1 cut(s) 1065
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 3 cut(s) 163, 797, 907
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 5 cut(s) 25, 572, 711, 1020, 1065
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 2 cut(s) 691, 1126
MmeI TCCRAC 2 cut(s) 59, 323
Mox20I TGGCCA 1 cut(s) 861
MroXI GAANNNNTTC 1 cut(s) 970
MscI TGGCCA 1 cut(s) 861
MseI TTAA 4 cut(s) 315, 807, 854, 1041
MslI CAYNNNNRTG 1 cut(s) 746
Msp20I TGGCCA 1 cut(s) 861
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 214
MunI CAATTG 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 214
MwoI GCNNNNNNNGC 2 cut(s) 283, 1004
NcoI CCATGG 3 cut(s) 207, 669, 747
NdeI CATATG 1 cut(s) 89
NdeII GATC 2 cut(s) 753, 822
NlaIII CATG 7 cut(s) 211, 412, 449, 673, 751, 764, 1081
NlaIV GGNNCC 3 cut(s) 73, 205, 1062
NmuCI GTSAC 2 cut(s) 196, 430
PagI TCATGA 1 cut(s) 760
PciSI GCTCTTC 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 970
PfeI GAWTC 2 cut(s) 530, 966
PflMI CCANNNNNTGG 2 cut(s) 213, 857
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 2 cut(s) 690, 1125
PpsI GAGTC 2 cut(s) 690, 1125
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 3 cut(s) 73, 205, 1062
PspPI GGNCC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 753
RsaI GTAC 2 cut(s) 480, 831
RsaNI GTAC 2 cut(s) 479, 830
RseI CAYNNNNRTG 1 cut(s) 746
SacI GAGCTC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 711
SaqAI TTAA 4 cut(s) 315, 807, 854, 1041
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 2 cut(s) 753, 822
Sau96I GGNCC 1 cut(s) 71
SchI GAGTC 2 cut(s) 691, 1126
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 3 cut(s) 163, 797, 907
SfaNI GCATC 1 cut(s) 604
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 2 cut(s) 933, 1151
SmoI CTYRAG 2 cut(s) 933, 1151
Sse9I AATT 5 cut(s) 25, 572, 711, 1020, 1065
SsiI CCGC 2 cut(s) 104, 617
SspI AATATT 1 cut(s) 485
SspMI CTAG 4 cut(s) 96, 555, 692, 1011
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 4 cut(s) 207, 669, 747, 771
TaqI TCGA 1 cut(s) 425
TasI AATT 5 cut(s) 25, 572, 711, 1020, 1065
TfiI GAWTC 2 cut(s) 530, 966
Tru1I TTAA 4 cut(s) 315, 807, 854, 1041
Tru9I TTAA 4 cut(s) 315, 807, 854, 1041
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 2 cut(s) 196, 430
TseI GCWGC 1 cut(s) 400
Tsp45I GTSAC 2 cut(s) 196, 430
TspDTI ATGAA 7 cut(s) 68, 522, 592, 640, 720, 1040, 1066
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 2 cut(s) 213, 857
VpaK11BI GGWCC 1 cut(s) 71
XapI RAATTY 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 970
XspI CTAG 4 cut(s) 96, 555, 692, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.