Rmu_sc0009611.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009611.1
OG0000195
Physical Location & Seq
Reverse (-)
44422 .. 45303
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009611.1_g000005.1.cds

Sequence Viewer

Length: 882 bp
atggatcgatggagctatgaatgggatgacccaaggggatatgtgcaagaaaatttctatggtggaggtcatcaagagtggaattctcatgcggtgggttctatgtcttcttgcaatgaaacttgtgctttgtgtaattctctgtggcattcatcttttgagtgctctttgagatttgaatgcccggattttatgcaaaagtatgagtacaagatgggcatttatcaagagacatttgtacccaatgcatatccacaagatgaagcttatgagcctaggaaggaatttgttgaaggactactagctcaattgcaagcctcccgagatcttttacaagcctctcaagctagaatttcacaagagaccgtggttcccgaagcatatcctcatgagcaagtgtatgagtctaggaggccttctcttgatgaactgctagctcaattgcaagcatcccaagctcgattgcaagattctcaagaaatgcttatacattccaatgagcaacttgaagcaagttttgcacaagagccacccttcaccatttatgagcatgaatctttctttgaccaagtggagcctatttcaagagaagaagtgcatattgagcatcttgagcaagagtcctttatgcgagttgaaaatgatgatagtgatgttgatgtacaagaaattgagcttggttatgaaagtttcaatgcaagtggggtgcgagactacacttcggaggaatgggtacaatattggaaatctaagcttccaaatgaaggggagatacttaaagatgatttcgaagaggaggatgacttgtctagtgaggaggatacggagtttgaagtcatacaccataatcccttattcatcgaggaggatgcggagctttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

34.4

Weight (kDa)

4.18

Isoelectric Point (pI)

67.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 92, 872
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 4 cut(s) 52, 82, 284, 351
AfaI GTAC 4 cut(s) 209, 240, 663, 735
AfiI CCNNNNNNNGG 1 cut(s) 764
AgsI TTSAA 7 cut(s) 179, 293, 509, 585, 638, 694, 833
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 9 cut(s) 15, 266, 305, 347, 437, 458, 676, 754, 877
AluI AGCT 9 cut(s) 15, 266, 305, 347, 437, 458, 676, 754, 877
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 3 cut(s) 224, 356, 705
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 1 cut(s) 413
ApoI RAATTY 4 cut(s) 52, 82, 284, 351
AspA2I CCTAGG 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 529
AsuII TTCGAA 1 cut(s) 789
AsuNHI GCTAGC 1 cut(s) 433
AvaI CYCGRG 1 cut(s) 321
AvrII CCTAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BarI GAAGNNNNNNTAC 2 cut(s) 756, 788
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 2 cut(s) 3, 208
BcgI CGANNNNNNTGC 1 cut(s) 851
BciVI GTATCC 1 cut(s) 814
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 3 cut(s) 224, 356, 705
BfaI CTAG 6 cut(s) 276, 302, 348, 408, 434, 810
BfuI GTATCC 1 cut(s) 814
BglII AGATCT 1 cut(s) 325
BlnI CCTAGG 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 185
BmeT110I CYCGRG 1 cut(s) 321
BmiI GGNNCC 2 cut(s) 372, 576
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 3 cut(s) 458, 616, 859
BmtI GCTAGC 1 cut(s) 437
BpiI GAAGAC 1 cut(s) 99
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bpu14I TTCGAA 1 cut(s) 789
BpuEI CTTGAG 3 cut(s) 327, 459, 632
BpuMI CCSGG 1 cut(s) 185
Bsa29I ATCGAT 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 3 cut(s) 32, 275, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse3DI GCAATG 1 cut(s) 121
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 32, 275, 366
BseGI GGATG 4 cut(s) 31, 449, 805, 874
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMI GCAATG 1 cut(s) 121
BseRI GAGGAG 3 cut(s) 809, 830, 878
BshFI GGCC 1 cut(s) 415
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 3 cut(s) 224, 356, 705
BsmI GAATGC 2 cut(s) 148, 185
BsnI GGCC 1 cut(s) 415
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 789
Bsp1286I GDGCHC 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 661
Bsp143I GATC 2 cut(s) 4, 325
BspACI CCGC 2 cut(s) 92, 872
BspANI GGCC 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 7
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 372, 576
BspOI GCTAGC 1 cut(s) 437
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 789
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 661
BssECI CCNNGG 3 cut(s) 32, 275, 366
BssMI GATC 2 cut(s) 4, 325
BssT1I CCWWGG 2 cut(s) 32, 275
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 786
BstAPI GCANNNNNTGC 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 661
BstBI TTCGAA 1 cut(s) 789
BstC8I GCNNGC 3 cut(s) 315, 435, 447
BstDEI CTNAG 1 cut(s) 750
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 31, 449, 805, 874
BstKTI GATC 2 cut(s) 7, 328
BstMAI GTCTC 3 cut(s) 224, 356, 705
BstMBI GATC 2 cut(s) 4, 325
BstMWI GCNNNNNNNGC 5 cut(s) 344, 455, 518, 604, 613
BstSCI CCNGG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 7
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 1 cut(s) 415
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 4 cut(s) 31, 449, 805, 874
Cac8I GCNNGC 3 cut(s) 315, 435, 447
CciI TCATGA 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 4 cut(s) 208, 239, 662, 734
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 3 cut(s) 89, 389, 551
CviQI GTAC 4 cut(s) 208, 239, 662, 734
DdeI CTNAG 1 cut(s) 750
DpnI GATC 2 cut(s) 6, 327
DpnII GATC 2 cut(s) 4, 325
Eam1104I CTCTTC 1 cut(s) 786
EarI CTCTTC 1 cut(s) 786
Eco130I CCWWGG 2 cut(s) 32, 275
Eco147I AGGCCT 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 321
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 32, 275
EcoT22I ATGCAT 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 32, 275
FaeI CATG 3 cut(s) 92, 392, 554
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 3 cut(s) 88, 388, 550
FokI GGATG 3 cut(s) 38, 436, 812
FspBI CTAG 6 cut(s) 276, 302, 348, 408, 434, 810
HaeIII GGCC 1 cut(s) 415
HapII CCGG 1 cut(s) 185
Hin1II CATG 3 cut(s) 92, 392, 554
HindIII AAGCTT 2 cut(s) 264, 752
HinfI GANTC 4 cut(s) 404, 470, 554, 620
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 529
Hpy188I TCNGA 1 cut(s) 724
Hpy188III TCNNGA 9 cut(s) 74, 227, 321, 374, 389, 422, 476, 585, 611
HpyAV CCTTC 5 cut(s) 274, 287, 426, 544, 758
HpyCH4III ACNGT 1 cut(s) 367
HpyF10VI GCNNNNNNNGC 5 cut(s) 344, 455, 518, 604, 613
HpyF3I CTNAG 1 cut(s) 750
Hsp92II CATG 3 cut(s) 92, 392, 554
Kzo9I GATC 2 cut(s) 4, 325
LmnI GCTCC 3 cut(s) 12, 574, 874
LpnPI CCDG 1 cut(s) 198
LweI GCATC 3 cut(s) 458, 616, 859
MaeI CTAG 6 cut(s) 276, 302, 348, 408, 434, 810
MalI GATC 2 cut(s) 6, 327
MboI GATC 2 cut(s) 4, 325
MboII GAAGA 3 cut(s) 99, 602, 803
MfeI CAATTG 2 cut(s) 308, 440
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 8 cut(s) 52, 82, 136, 284, 308, 351, 440, 669
MlyI GAGTC 2 cut(s) 413, 629
Mph1103I ATGCAT 1 cut(s) 250
MseI TTAA 2 cut(s) 777, 880
MslI CAYNNNNRTG 1 cut(s) 495
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 2 cut(s) 308, 440
Mva1269I GAATGC 2 cut(s) 148, 185
MwoI GCNNNNNNNGC 5 cut(s) 344, 455, 518, 604, 613
NciI CCSGG 1 cut(s) 185
NdeII GATC 2 cut(s) 4, 325
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 3 cut(s) 92, 392, 554
NlaIV GGNNCC 2 cut(s) 372, 576
NsiI ATGCAT 1 cut(s) 250
NspV TTCGAA 1 cut(s) 789
PagI TCATGA 1 cut(s) 388
PceI AGGCCT 1 cut(s) 415
PctI GAATGC 2 cut(s) 148, 185
PfeI GAWTC 2 cut(s) 470, 554
PleI GAGTC 2 cut(s) 412, 628
PpsI GAGTC 2 cut(s) 412, 628
PspN4I GGNNCC 2 cut(s) 372, 576
PsuI RGATCY 1 cut(s) 325
RsaI GTAC 4 cut(s) 209, 240, 663, 735
RsaNI GTAC 4 cut(s) 208, 239, 662, 734
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 2 cut(s) 777, 880
Sau3AI GATC 2 cut(s) 4, 325
SchI GAGTC 2 cut(s) 413, 629
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 3 cut(s) 458, 616, 859
SfuI TTCGAA 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 3 cut(s) 342, 474, 611
SmoI CTYRAG 3 cut(s) 342, 474, 611
Sse9I AATT 8 cut(s) 52, 82, 136, 284, 308, 351, 440, 669
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 2 cut(s) 92, 872
SspI AATATT 1 cut(s) 740
SspMI CTAG 6 cut(s) 276, 302, 348, 408, 434, 810
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 32, 275
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 4 cut(s) 7, 460, 789, 861
TasI AATT 8 cut(s) 52, 82, 136, 284, 308, 351, 440, 669
TatI WGTACW 2 cut(s) 207, 661
TfiI GAWTC 2 cut(s) 470, 554
Tru1I TTAA 2 cut(s) 777, 880
Tru9I TTAA 2 cut(s) 777, 880
TspDTI ATGAA 9 cut(s) 33, 132, 141, 276, 441, 567, 699, 777, 847
TspGWI ACGGA 1 cut(s) 839
XapI RAATTY 4 cut(s) 52, 82, 284, 351
XmaJI CCTAGG 1 cut(s) 275
XspI CTAG 6 cut(s) 276, 302, 348, 408, 434, 810
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.