Rmu_sc0000125.1_g000058

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000125.1
OG0000195
Physical Location & Seq
Reverse (-)
225496 .. 226131
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000125.1_g000058.1.cds

Sequence Viewer

Length: 636 bp
atggacctgtatcaagagacatttgtacccgacgcatatccacaagatgaagcttatgagcctaggaaggaattcgttgaaggactactagctcaattgcaagcctctcgagatcttttacaagcctctcaagttaggatttcacaagagaccatggtgtccgaaggatatcctcataagcaagagtacgagtctaggaagccttctcttgaagaattgctagctcaattgcaagcttctcaagaaatacttatacataccaatgagcaacttgagactagtcttgcacaagagccacccttcaccatttatgagcatgaatctttctttgaccaagtggagcctatttccagagaagaagtgtatatcgagcatcttgagcaagaatcctttatgcaagttgaaaatgatgatagtgatgttgatgtacaagaaattgagcttggttatgaaagtttcaatgcaagtgaggtgagagactacacttcggaggaatgggtgcaatattggaaatctaaacttccaaatggaggagagatatttgaagatgattccgaagaagaggatgtcttgtctagtgaggaggatacgaagcttgaagttatacttgttcatcgaggaggatgcggaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.51

Weight (kDa)

4.06

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 157
AciI CCGC 1 cut(s) 627
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 3 cut(s) 27, 188, 429
AfiI CCNNNNNNNGG 1 cut(s) 530
AgsI TTSAA 6 cut(s) 80, 212, 404, 460, 545, 599
AhlI ACTAGT 1 cut(s) 278
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AluBI AGCT 6 cut(s) 53, 92, 224, 236, 442, 595
AluI AGCT 6 cut(s) 53, 92, 224, 236, 442, 595
Alw26I GTCTC 4 cut(s) 11, 143, 269, 471
Ama87I CYCGRG 1 cut(s) 108
ApoI RAATTY 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 71
AspA2I CCTAGG 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 295, 484
AsuNHI GCTAGC 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 62
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
BcgI CGANNNNNNTGC 3 cut(s) 89, 123, 606
BciVI GTATCC 1 cut(s) 580
BcoDI GTCTC 4 cut(s) 11, 143, 269, 471
BcuI ACTAGT 1 cut(s) 278
BfaI CTAG 6 cut(s) 63, 89, 195, 221, 279, 576
BfuI GTATCC 1 cut(s) 580
BglII AGATCT 1 cut(s) 112
BlnI CCTAGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 342
BmsI GCATC 2 cut(s) 382, 614
BmtI GCTAGC 1 cut(s) 224
BpuEI CTTGAG 4 cut(s) 114, 225, 293, 398
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 62, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 62, 153
BseGI GGATG 2 cut(s) 571, 629
BseLI CCNNNNNNNGG 1 cut(s) 530
BseRI GAGGAG 3 cut(s) 546, 596, 633
BsiHKCI CYCGRG 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 530
BsmAI GTCTC 4 cut(s) 11, 143, 269, 471
Bso31I GGTCTC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 1 cut(s) 112
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 627
BspLI GGNNCC 1 cut(s) 342
BspOI GCTAGC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 62, 153
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 2 cut(s) 62, 153
Bst6I CTCTTC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 102, 222, 234
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 571, 629
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 4 cut(s) 11, 143, 269, 471
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuI GTATCC 1 cut(s) 580
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 2 cut(s) 571, 629
Cac8I GCNNGC 3 cut(s) 102, 222, 234
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 41
Csp6I GTAC 3 cut(s) 26, 187, 428
CviAII CATG 2 cut(s) 154, 317
CviQI GTAC 3 cut(s) 26, 187, 428
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 555
EarI CTCTTC 1 cut(s) 555
Eco130I CCWWGG 2 cut(s) 62, 153
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 71
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 62, 153
ErhI CCWWGG 2 cut(s) 62, 153
FaeI CATG 2 cut(s) 157, 320
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 591, 623
FatI CATG 2 cut(s) 153, 316
FokI GGATG 1 cut(s) 578
FspBI CTAG 6 cut(s) 63, 89, 195, 221, 279, 576
HgaI GACGC 1 cut(s) 41
Hin1II CATG 2 cut(s) 157, 320
HindIII AAGCTT 3 cut(s) 51, 234, 593
HinfI GANTC 4 cut(s) 191, 320, 386, 551
HphI GGTGA 2 cut(s) 295, 484
Hpy188I TCNGA 3 cut(s) 163, 490, 556
Hpy188III TCNNGA 7 cut(s) 14, 108, 110, 209, 242, 351, 377
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 5 cut(s) 61, 74, 158, 213, 310
HpyCH4V TGCA 6 cut(s) 100, 232, 287, 397, 464, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
Hsp92II CATG 2 cut(s) 157, 320
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 2 cut(s) 20, 364
LweI GCATC 2 cut(s) 382, 614
MaeI CTAG 6 cut(s) 63, 89, 195, 221, 279, 576
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 5 cut(s) 224, 368, 557, 569, 572
MfeI CAATTG 2 cut(s) 95, 227
MflI RGATCY 1 cut(s) 112
MluCI AATT 5 cut(s) 71, 95, 215, 227, 435
MlyI GAGTC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 71
MslI CAYNNNNRTG 1 cut(s) 261
MunI CAATTG 2 cut(s) 95, 227
MwoI GCNNNNNNNGC 1 cut(s) 379
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 112
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 2 cut(s) 157, 320
NlaIV GGNNCC 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 320, 386, 551
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 3 cut(s) 27, 188, 429
RsaNI GTAC 3 cut(s) 26, 187, 428
RseI CAYNNNNRTG 1 cut(s) 261
Sau3AI GATC 1 cut(s) 112
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 200
SetI ASST 8 cut(s) 9, 55, 94, 226, 238, 444, 474, 597
SfaNI GCATC 2 cut(s) 382, 614
Sfr274I CTCGAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 5 cut(s) 108, 129, 240, 272, 377
SmoI CTYRAG 5 cut(s) 108, 129, 240, 272, 377
SpeI ACTAGT 1 cut(s) 278
Sse9I AATT 5 cut(s) 71, 95, 215, 227, 435
SsiI CCGC 1 cut(s) 627
SspI AATATT 1 cut(s) 506
SspMI CTAG 6 cut(s) 63, 89, 195, 221, 279, 576
StyI CCWWGG 2 cut(s) 62, 153
TaqI TCGA 3 cut(s) 109, 369, 616
TasI AATT 5 cut(s) 71, 95, 215, 227, 435
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 3 cut(s) 320, 386, 551
TspDTI ATGAA 4 cut(s) 63, 333, 465, 602
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 108
XmaJI CCTAGG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 6 cut(s) 63, 89, 195, 221, 279, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.