Rroxscaffold_6G00389700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000195
Physical Location & Seq
Reverse (-)
3719647 .. 3747263
27617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389700.1

Sequence Viewer

Length: 378 bp
ATGAAGGCAAGTGTGCTTGAAGAACATGAACTTGTCATATCTAATGCTATAAATGGTGCCGATCCTCTTCTTGAACTGGTTCTCGCTCAGGTACTCAGTTCACATATCATTTATGTTATTGATAGAGAAGGAAACTTGACTATGCTAATGCCTTGGTGCTTTCCCGTGAAGTGCCTCCGCTATTTCAGAAGGCCTAGTCCCAAATTTATTCTACTCACAACCCATAAGCGTGTGTACATGTATCAAGAGACATTTGTACCCGACGCATATCCACAAAATGTAGCTTATGAGCCTAGGAAGGAATTCGATGAAGGACTACTAGCTCAATTGCAAGCCTCTCGAGATCTTTTACATGCCTCCCAATCTAGGATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.44

Weight (kDa)

6.41

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AciI CCGC 1 cut(s) 178
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 2 cut(s) 203, 302
AfaI GTAC 3 cut(s) 93, 236, 258
AfiI CCNNNNNNNGG 1 cut(s) 366
AflIII ACRYGT 1 cut(s) 237
AgsI TTSAA 2 cut(s) 20, 74
AluBI AGCT 2 cut(s) 284, 323
AluI AGCT 2 cut(s) 284, 323
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 339
AoxI GGCC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 203, 302
Asp700I GAANNNNTTC 2 cut(s) 78, 302
AspA2I CCTAGG 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 339
AvrII CCTAGG 1 cut(s) 293
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BanI GGYRCC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 4 cut(s) 195, 294, 320, 366
BglII AGATCT 1 cut(s) 343
BlnI CCTAGG 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 339
BmiI GGNNCC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 152, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 81
BseDI CCNNGG 2 cut(s) 152, 293
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 101, 109
BseNI ACTGG 1 cut(s) 81
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 339
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 2 cut(s) 61, 343
BspACI CCGC 1 cut(s) 178
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 2 cut(s) 100, 108
BspLI GGNNCC 1 cut(s) 58
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 152, 293
BssMI GATC 2 cut(s) 61, 343
BssT1I CCWWGG 2 cut(s) 152, 293
Bst6I CTCTTC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 87, 95
BstKTI GATC 2 cut(s) 64, 346
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 61, 343
BstNSI RCATGY 2 cut(s) 241, 356
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 333
CseI GACGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 92, 235, 257
CviAII CATG 3 cut(s) 26, 238, 353
CviJI RGCY 5 cut(s) 193, 284, 292, 323, 335
CviKI_1 RGCY 5 cut(s) 193, 284, 292, 323, 335
CviQI GTAC 3 cut(s) 92, 235, 257
DdeI CTNAG 2 cut(s) 87, 95
DpnI GATC 2 cut(s) 63, 345
DpnII GATC 2 cut(s) 61, 343
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 2 cut(s) 152, 293
Eco147I AGGCCT 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 152, 293
ErhI CCWWGG 2 cut(s) 152, 293
FaeI CATG 3 cut(s) 29, 241, 356
FaqI GGGAC 1 cut(s) 183
FatI CATG 3 cut(s) 25, 237, 352
FspBI CTAG 4 cut(s) 195, 294, 320, 366
HaeIII GGCC 1 cut(s) 193
HgaI GACGC 1 cut(s) 272
Hin1II CATG 3 cut(s) 29, 241, 356
Hpy166II GTNNAC 2 cut(s) 101, 235
Hpy188I TCNGA 1 cut(s) 188
Hpy188III TCNNGA 4 cut(s) 71, 245, 339, 341
Hpy8I GTNNAC 2 cut(s) 101, 235
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 4 cut(s) 122, 183, 292, 305
HpyCH4V TGCA 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 87, 95
Hsp92II CATG 3 cut(s) 29, 241, 356
Kzo9I GATC 2 cut(s) 61, 343
LpnPI CCDG 2 cut(s) 62, 74
MaeI CTAG 4 cut(s) 195, 294, 320, 366
MalI GATC 2 cut(s) 63, 345
MboI GATC 2 cut(s) 61, 343
MboII GAAGA 2 cut(s) 32, 59
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 343
MluCI AATT 3 cut(s) 203, 302, 326
MnlI CCTC 4 cut(s) 75, 185, 346, 367
MroXI GAANNNNTTC 2 cut(s) 78, 302
MslI CAYNNNNRTG 1 cut(s) 228
MunI CAATTG 1 cut(s) 326
NdeII GATC 2 cut(s) 61, 343
NlaIII CATG 3 cut(s) 29, 241, 356
NlaIV GGNNCC 1 cut(s) 58
NspI RCATGY 2 cut(s) 241, 356
PaeR7I CTCGAG 1 cut(s) 339
PceI AGGCCT 1 cut(s) 193
PciI ACATGT 1 cut(s) 237
PdmI GAANNNNTTC 2 cut(s) 78, 302
PscI ACATGT 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 3 cut(s) 93, 236, 258
RsaNI GTAC 3 cut(s) 92, 235, 257
RseI CAYNNNNRTG 1 cut(s) 228
Sau3AI GATC 2 cut(s) 61, 343
SetI ASST 3 cut(s) 93, 286, 325
Sfr274I CTCGAG 1 cut(s) 339
SlaI CTCGAG 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 3 cut(s) 203, 302, 326
SseBI AGGCCT 1 cut(s) 193
SsiI CCGC 1 cut(s) 178
SspMI CTAG 4 cut(s) 195, 294, 320, 366
StuI AGGCCT 1 cut(s) 193
StyI CCWWGG 2 cut(s) 152, 293
TaqI TCGA 2 cut(s) 306, 340
TasI AATT 3 cut(s) 203, 302, 326
TatI WGTACW 1 cut(s) 234
TspDTI ATGAA 4 cut(s) 17, 42, 324, 363
XapI RAATTY 2 cut(s) 203, 302
XceI RCATGY 2 cut(s) 241, 356
XhoI CTCGAG 1 cut(s) 339
XmaJI CCTAGG 1 cut(s) 293
XmnI GAANNNNTTC 2 cut(s) 78, 302
XspI CTAG 4 cut(s) 195, 294, 320, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.