Rroxscaffold_5G00346540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000195
Physical Location & Seq
Forward (+)
17458510 .. 17460636
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346540.1

Sequence Viewer

Length: 1227 bp
ATGTTAAATCAATGGAGCTATGGATGGGATGATCGTAGGGGATATGAGCAACAAAGTTATAATGGTGAAGGTTATCAAGAATGGAATCCCTATGCCGAGAGTCCTATGCCTTGTTATAACCAACCTTGTGCTTTGTGTAATTCTCCGTGGCATTTACCTTTTGAGTGTTCTTTGAGGTTTGAGTATCGGGATTTTATGCAAGAATATGGGTACAAGATGGGGATGTATCAAGAGACATGTGTACCCGAAGCATATCCACAAGAGCAAGCTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTAGCTCAATTGGAAGCCTCTAATGCTCAATTGCAAGCCTCCCAAGCTCAATGTCTAGCCTCCCAAGCTCGATTGCATGCTAAATTGGAAGCCTTCAATGCTCAATTGCAAGCTTCTCAAGAAATGATTTCACATTCCAATGAGCAACTTGAGCCTAGTCTTGAGCAAGAGCCACCTTTCACCATTTTTCATGAGCAAGATTCTTCCTTTGACCAAGTGGAGCCTAATTCAAGAGAAGGAATATATTTTGAGCATTATGAACAAGAGTTGCCCCTTCAAGATCGAGAGGGTGATGTTCATGTTCTTGAAAGTGTGCTTGGTTATGGAAATTTTGAAGCAAAAGAGGATAGCTTGTCTAGTGAGGAGGATGCGGAGCTTGAAGAGCTACACCATGATCCCTTAATCCTTGAGGCCGATATTCCTAAGGAGGAAGAGAGTCCTTTAATGCATTGTAATGATAAAAAAGTTGAAGAGACAAGGGTTTTCTCTCCTCCCACATCCAAGGAGATCCATCATGAGCTTCCCAAGGTAGAGAGTAGAACATTGAGCACTTATGTTCTTAATGAGGAAATTGAGATTAAGGTACTTCTACCTCTCAATCCACCGTTTAGTGACCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAGTGGAGCACATGCACTCAACCTTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCGTACGATCATCATTTCTACACCACTTTTGAAGGAGAATACAAGATTAGCTTCTAGAAGAAAAATAGAGAAGAGGAGGAAGATTAAGAAGCTACACTTTTGGTCACCCATTGGAATCTTCATGGATAGCACTTGGTCTTGCCTCTATGACATGTCAAGGAGTCCCTTAGCCCCTAACAATAGGGTGGTCGCACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

408

Amino Acids

47.45

Weight (kDa)

4.82

Isoelectric Point (pI)

66.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 60, 117
AciI CCGC 1 cut(s) 674
AclWI GGATC 2 cut(s) 692, 805
AcsI RAATTY 1 cut(s) 631
AfaI GTAC 4 cut(s) 212, 243, 888, 1018
AflIII ACRYGT 2 cut(s) 236, 1164
AgsI TTSAA 9 cut(s) 296, 400, 534, 581, 611, 638, 683, 773, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
Alw21I GWGCWC 2 cut(s) 854, 964
Alw26I GTCTC 2 cut(s) 227, 770
AlwI GGATC 2 cut(s) 692, 805
AoxI GGCC 1 cut(s) 714
ApoI RAATTY 1 cut(s) 631
AspA2I CCTAGG 1 cut(s) 278
AsuHPI GGTGA 5 cut(s) 77, 475, 605, 949, 1110
AvrII CCTAGG 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 726
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
Bbv12I GWGCWC 2 cut(s) 854, 964
BccI CCATC 6 cut(s) 18, 211, 295, 822, 934, 990
BciVI GTATCC 1 cut(s) 1227
BcoDI GTCTC 2 cut(s) 227, 770
BfaI CTAG 6 cut(s) 279, 305, 359, 459, 660, 1068
BfuI GTATCC 1 cut(s) 1227
BlnI CCTAGG 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 525
BmsI GCATC 1 cut(s) 661
Bpu10I CCTNAGC 1 cut(s) 1180
BpuEI CTTGAG 5 cut(s) 405, 473, 485, 731, 975
BsaJI CCNNGG 4 cut(s) 146, 278, 804, 828
Bse21I CCTNAGG 1 cut(s) 726
BseDI CCNNGG 4 cut(s) 146, 278, 804, 828
BseGI GGATG 5 cut(s) 29, 34, 228, 676, 800
BseRI GAGGAG 3 cut(s) 680, 783, 1102
BshFI GGCC 1 cut(s) 716
BsiHKAI GWGCWC 2 cut(s) 854, 964
BsiWI CGTACG 1 cut(s) 1016
BslFI GGGAC 1 cut(s) 1161
BsmAI GTCTC 2 cut(s) 227, 770
BsmFI GGGAC 1 cut(s) 1161
BsnI GGCC 1 cut(s) 716
Bsp1286I GDGCHC 2 cut(s) 854, 964
Bsp143I GATC 5 cut(s) 31, 583, 697, 810, 1020
BspACI CCGC 1 cut(s) 674
BspANI GGCC 1 cut(s) 716
BspHI TCATGA 2 cut(s) 493, 817
BspLI GGNNCC 1 cut(s) 525
BspPI GGATC 2 cut(s) 692, 805
BspQI GCTCTTC 1 cut(s) 678
BssECI CCNNGG 4 cut(s) 146, 278, 804, 828
BssMI GATC 5 cut(s) 31, 583, 697, 810, 1020
BssT1I CCWWGG 3 cut(s) 278, 804, 828
Bst4CI ACNGT 1 cut(s) 909
Bst6I CTCTTC 4 cut(s) 678, 729, 768, 1079
BstC8I GCNNGC 4 cut(s) 267, 339, 381, 414
BstDEI CTNAG 2 cut(s) 726, 1180
BstDSI CCRYGG 1 cut(s) 146
BstEII GGTNACC 1 cut(s) 1116
BstF5I GGATG 5 cut(s) 29, 34, 228, 676, 800
BstKTI GATC 5 cut(s) 34, 586, 700, 813, 1023
BstMAI GTCTC 2 cut(s) 227, 770
BstMBI GATC 5 cut(s) 31, 583, 697, 810, 1020
BstMWI GCNNNNNNNGC 7 cut(s) 283, 326, 347, 368, 401, 454, 685
BstNSI RCATGY 4 cut(s) 240, 383, 968, 1168
BstPI GGTNACC 1 cut(s) 1116
BstX2I RGATCY 1 cut(s) 810
BstYI RGATCY 1 cut(s) 810
Bsu36I CCTNAGG 1 cut(s) 726
BsuI GTATCC 1 cut(s) 1227
BsuRI GGCC 1 cut(s) 716
BtgI CCRYGG 1 cut(s) 146
BtsCI GGATG 5 cut(s) 29, 34, 228, 676, 800
Cac8I GCNNGC 4 cut(s) 267, 339, 381, 414
CciI TCATGA 2 cut(s) 493, 817
Csp6I GTAC 4 cut(s) 211, 242, 887, 1017
CviAII CATG 9 cut(s) 237, 380, 494, 602, 695, 818, 965, 1135, 1165
CviQI GTAC 4 cut(s) 211, 242, 887, 1017
DdeI CTNAG 2 cut(s) 726, 1180
DpnI GATC 5 cut(s) 33, 585, 699, 812, 1022
DpnII GATC 5 cut(s) 31, 583, 697, 810, 1020
Eam1104I CTCTTC 4 cut(s) 678, 729, 768, 1079
EarI CTCTTC 4 cut(s) 678, 729, 768, 1079
Eco130I CCWWGG 3 cut(s) 278, 804, 828
Eco81I CCTNAGG 1 cut(s) 726
Eco91I GGTNACC 1 cut(s) 1116
EcoO65I GGTNACC 1 cut(s) 1116
EcoT14I CCWWGG 3 cut(s) 278, 804, 828
EcoT22I ATGCAT 1 cut(s) 753
ErhI CCWWGG 3 cut(s) 278, 804, 828
FaeI CATG 9 cut(s) 240, 383, 497, 605, 698, 821, 968, 1138, 1168
FalI AAGNNNNNCTT 4 cut(s) 1048, 1080, 1094, 1126
FaqI GGGAC 1 cut(s) 1161
FatI CATG 9 cut(s) 236, 379, 493, 601, 694, 817, 964, 1134, 1164
FokI GGATG 5 cut(s) 36, 41, 235, 683, 787
FspBI CTAG 6 cut(s) 279, 305, 359, 459, 660, 1068
HaeIII GGCC 1 cut(s) 716
Hin1II CATG 9 cut(s) 240, 383, 497, 605, 698, 821, 968, 1138, 1168
HindIII AAGCTT 2 cut(s) 267, 414
HinfI GANTC 6 cut(s) 85, 100, 503, 739, 1128, 1174
HphI GGTGA 5 cut(s) 77, 475, 605, 949, 1110
Hpy166II GTNNAC 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 5 cut(s) 62, 406, 533, 587, 1039
HpyCH4III ACNGT 1 cut(s) 909
HpyCH4V TGCA 6 cut(s) 199, 337, 379, 412, 751, 968
HpyF10VI GCNNNNNNNGC 7 cut(s) 283, 326, 347, 368, 401, 454, 685
HpyF3I CTNAG 2 cut(s) 726, 1180
Hsp92II CATG 9 cut(s) 240, 383, 497, 605, 698, 821, 968, 1138, 1168
Kzo9I GATC 5 cut(s) 31, 583, 697, 810, 1020
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 4 cut(s) 15, 523, 676, 959
LweI GCATC 1 cut(s) 661
MaeI CTAG 6 cut(s) 279, 305, 359, 459, 660, 1068
MaeIII GTNAC 2 cut(s) 914, 1116
MalI GATC 5 cut(s) 33, 585, 699, 812, 1022
MboI GATC 5 cut(s) 31, 583, 697, 810, 1020
MboII GAAGA 9 cut(s) 308, 498, 695, 746, 785, 1083, 1096, 1105, 1123
MfeI CAATTG 3 cut(s) 311, 332, 407
MflI RGATCY 1 cut(s) 810
MhlI GDGCHC 2 cut(s) 854, 964
MluCI AATT 8 cut(s) 139, 311, 332, 386, 407, 529, 631, 873
MlyI GAGTC 3 cut(s) 109, 748, 1183
Mph1103I ATGCAT 1 cut(s) 753
MseI TTAA 6 cut(s) 5, 704, 746, 864, 882, 1098
MslI CAYNNNNRTG 2 cut(s) 441, 756
MunI CAATTG 3 cut(s) 311, 332, 407
MwoI GCNNNNNNNGC 7 cut(s) 283, 326, 347, 368, 401, 454, 685
NdeII GATC 5 cut(s) 31, 583, 697, 810, 1020
NlaIII CATG 9 cut(s) 240, 383, 497, 605, 698, 821, 968, 1138, 1168
NlaIV GGNNCC 1 cut(s) 525
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 914, 1116
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 4 cut(s) 240, 383, 968, 1168
PaeI GCATGC 1 cut(s) 383
PagI TCATGA 2 cut(s) 493, 817
PciI ACATGT 2 cut(s) 236, 1164
PciSI GCTCTTC 1 cut(s) 678
PfeI GAWTC 3 cut(s) 85, 503, 1128
Pfl23II CGTACG 1 cut(s) 1016
PleI GAGTC 3 cut(s) 108, 747, 1182
PpsI GAGTC 3 cut(s) 108, 747, 1182
PscI ACATGT 2 cut(s) 236, 1164
PsiI TTATAA 2 cut(s) 60, 117
PspEI GGTNACC 1 cut(s) 1116
PspLI CGTACG 1 cut(s) 1016
PspN4I GGNNCC 1 cut(s) 525
PsuI RGATCY 1 cut(s) 810
RsaI GTAC 4 cut(s) 212, 243, 888, 1018
RsaNI GTAC 4 cut(s) 211, 242, 887, 1017
RseI CAYNNNNRTG 2 cut(s) 441, 756
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 6 cut(s) 5, 704, 746, 864, 882, 1098
Sau3AI GATC 5 cut(s) 31, 583, 697, 810, 1020
SchI GAGTC 3 cut(s) 109, 748, 1183
SduI GDGCHC 2 cut(s) 854, 964
SfaNI GCATC 1 cut(s) 661
SmiMI CAYNNNNRTG 2 cut(s) 441, 756
SmlI CTYRAG 6 cut(s) 420, 452, 464, 710, 990, 1208
SmoI CTYRAG 6 cut(s) 420, 452, 464, 710, 990, 1208
SphI GCATGC 1 cut(s) 383
Sse9I AATT 8 cut(s) 139, 311, 332, 386, 407, 529, 631, 873
SsiI CCGC 1 cut(s) 674
SspMI CTAG 6 cut(s) 279, 305, 359, 459, 660, 1068
StyI CCWWGG 3 cut(s) 278, 804, 828
TaaI ACNGT 1 cut(s) 909
TaqI TCGA 2 cut(s) 373, 586
TasI AATT 8 cut(s) 139, 311, 332, 386, 407, 529, 631, 873
TfiI GAWTC 3 cut(s) 85, 503, 1128
Tru1I TTAA 6 cut(s) 5, 704, 746, 864, 882, 1098
Tru9I TTAA 6 cut(s) 5, 704, 746, 864, 882, 1098
TseFI GTSAC 2 cut(s) 914, 1116
Tsp45I GTSAC 2 cut(s) 914, 1116
TspDTI ATGAA 4 cut(s) 482, 576, 590, 1123
TspGWI ACGGA 1 cut(s) 135
XapI RAATTY 1 cut(s) 631
XbaI TCTAGA 1 cut(s) 1067
XceI RCATGY 4 cut(s) 240, 383, 968, 1168
XmaJI CCTAGG 1 cut(s) 278
XspI CTAG 6 cut(s) 279, 305, 359, 459, 660, 1068
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.