Rroxscaffold_2G00125720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000195
Physical Location & Seq
Reverse (-)
60749122 .. 60762822
13701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00125720.1

Sequence Viewer

Length: 681 bp
ATGCTTCCCTCCAAGCGGCTTGCAACGATTTCACTGTGGAGCTTGAATTTTAAAGATTGGGATTCTAGGGTTCTTCGGGTTTCAAACCTTGCAAGTATTCCGGAGACTTTGGGAGGTATTGGATGTGGTTTCTCCTCGATTGGCGCCACTTTGGGGATTTTAGTCCAAAACAGGGGTTTCGGACTTAAATCAAATGGAAATTACGTGATTGAAAAGAAATCTCGACAAATGCACCGAGCAAGGCCGGGAGGAGTTATGGCTCCTTCAAAGACATTGGCTACCTCAAGAGCAAAAGAAAATATTCTTAAGGCATTGAGAGCTACAAGAGCGAGGTCTGCACCGATAGCAGCAAAATCTGGTCTATCAAATGCTTCTGAAAATAATACTTCCCCAAAGAAAGCAATAACGTCACCGAAGGTGAACAAGACATTGACCAAGAAGAAGGGCAAATCCTCGAAGGCCACCAGCCCCTTACTAACCGGCTTAAAGTTGCTAAAGCGCGGCTGTGACAAGTTGAGGAAGCAAGTGAGTGACGGTGAGGTGACAACATGCGGCACCGATGATGTATTGACAAAGGCTCTAGGAAATGCTGAGCACCATGGCGAGTACGTGGTGTGGGAGGTTATGTCAAGCCTCGCTACGTATTTCAAACTGCCTAGGAACAAAAGGAAGACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

24.41

Weight (kDa)

10.55

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 143, 554
AccII CGCG 1 cut(s) 501
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 3 cut(s) 16, 501, 552
AcsI RAATTY 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 3 cut(s) 15, 153, 172
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 5 cut(s) 46, 84, 212, 267, 649
AluBI AGCT 2 cut(s) 42, 320
AluI AGCT 2 cut(s) 42, 320
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 1 cut(s) 98
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 2 cut(s) 242, 459
ApeKI GCWGC 1 cut(s) 347
ApoI RAATTY 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 300
AspA2I CCTAGG 1 cut(s) 656
AspLEI GCGC 2 cut(s) 146, 501
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 4 cut(s) 402, 430, 548, 553
AvrII CCTAGG 1 cut(s) 656
BanI GGYRCC 2 cut(s) 143, 554
BbsI GAAGAC 1 cut(s) 677
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 359
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 66, 581, 657
BfoI RGCGCY 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 305
BisI GCNGC 4 cut(s) 17, 348, 502, 553
BlnI CCTAGG 1 cut(s) 656
BlpI GCTNAGC 1 cut(s) 591
BlsI GCNGC 4 cut(s) 18, 349, 503, 554
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 3 cut(s) 145, 261, 556
BmrFI CCNGG 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 677
Bpu1102I GCTNAGC 1 cut(s) 591
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 1 cut(s) 246
BsaAI YACGTR 3 cut(s) 205, 610, 642
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 598, 656
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 153, 172
Bse118I RCCGGY 1 cut(s) 479
BseAI TCCGGA 1 cut(s) 100
BseDI CCNNGG 2 cut(s) 598, 656
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 3 cut(s) 15, 153, 172
BseMII CTCAG 1 cut(s) 582
BseRI GAGGAG 2 cut(s) 124, 264
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 2 cut(s) 244, 461
BshNI GGYRCC 2 cut(s) 143, 554
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 3 cut(s) 101, 245, 480
BslI CCNNNNNNNGG 3 cut(s) 15, 153, 172
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 2 cut(s) 244, 461
Bsp1286I GDGCHC 1 cut(s) 597
Bsp13I TCCGGA 1 cut(s) 100
Bsp1720I GCTNAGC 1 cut(s) 591
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 3 cut(s) 16, 501, 552
BspANI GGCC 2 cut(s) 244, 461
BspCNI CTCAG 1 cut(s) 583
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 145, 261, 556
BspT107I GGYRCC 2 cut(s) 143, 554
BspTI CTTAAG 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 2 cut(s) 598, 656
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 2 cut(s) 598, 656
Bst4CI ACNGT 3 cut(s) 36, 536, 676
BstACI GRCGYC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 305
BstBAI YACGTR 3 cut(s) 205, 610, 642
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 1 cut(s) 591
BstDSI CCRYGG 1 cut(s) 598
BstF5I GGATG 1 cut(s) 128
BstFNI CGCG 1 cut(s) 501
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 2 cut(s) 146, 501
BstMAI GTCTC 1 cut(s) 98
BstMWI GCNNNNNNNGC 4 cut(s) 317, 326, 335, 344
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 244
BstSNI TACGTA 1 cut(s) 642
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 359
BstV2I GAAGAC 1 cut(s) 677
BsuRI GGCC 2 cut(s) 244, 461
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 21
CfoI GCGC 2 cut(s) 146, 501
Cfr10I RCCGGY 1 cut(s) 479
Csp6I GTAC 1 cut(s) 607
CviAII CATG 2 cut(s) 549, 599
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 1 cut(s) 591
DinI GGCGCC 1 cut(s) 145
DraI TTTAAA 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 642
Eco130I CCWWGG 2 cut(s) 598, 656
EcoT14I CCWWGG 2 cut(s) 598, 656
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
ErhI CCWWGG 2 cut(s) 598, 656
FaeI CATG 2 cut(s) 552, 602
FaiI YATR 4 cut(s) 257, 550, 600, 626
FatI CATG 2 cut(s) 548, 598
Fnu4HI GCNGC 4 cut(s) 17, 348, 502, 553
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 17, 348, 502, 553
FspBI CTAG 3 cut(s) 66, 581, 657
GlaI GCGC 2 cut(s) 145, 500
GluI GCNGC 4 cut(s) 17, 348, 502, 553
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 2 cut(s) 244, 461
HapII CCGG 3 cut(s) 101, 245, 480
HhaI GCGC 2 cut(s) 146, 501
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 552, 602
Hin6I GCGC 2 cut(s) 144, 499
HinP1I GCGC 2 cut(s) 144, 499
HinfI GANTC 1 cut(s) 62
HpaII CCGG 3 cut(s) 101, 245, 480
HphI GGTGA 4 cut(s) 402, 430, 548, 553
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 2 cut(s) 182, 376
Hpy188III TCNNGA 3 cut(s) 101, 222, 285
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 4 cut(s) 273, 409, 436, 451
HpyCH4III ACNGT 3 cut(s) 36, 536, 676
HpyCH4IV ACGT 4 cut(s) 204, 407, 609, 641
HpyCH4V TGCA 4 cut(s) 23, 92, 232, 338
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 326, 335, 344
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 4 cut(s) 204, 407, 609, 641
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 552, 602
HspAI GCGC 2 cut(s) 144, 499
KasI GGCGCC 1 cut(s) 143
Kpn2I TCCGGA 1 cut(s) 100
LmnI GCTCC 2 cut(s) 39, 265
LpnPI CCDG 6 cut(s) 114, 157, 258, 342, 478, 493
Lsp1109I GCAGC 1 cut(s) 359
MaeI CTAG 3 cut(s) 66, 581, 657
MaeII ACGT 4 cut(s) 204, 407, 609, 641
MaeIII GTNAC 4 cut(s) 408, 506, 530, 541
MboII GAAGA 2 cut(s) 65, 451
MhlI GDGCHC 1 cut(s) 597
MluCI AATT 2 cut(s) 46, 199
Mly113I GGCGCC 1 cut(s) 144
MroI TCCGGA 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 4 cut(s) 51, 186, 306, 485
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 3 cut(s) 101, 245, 480
MspR9I CCNGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 4 cut(s) 317, 326, 335, 344
NarI GGCGCC 1 cut(s) 144
NciI CCSGG 1 cut(s) 246
NcoI CCATGG 1 cut(s) 598
NlaIII CATG 2 cut(s) 552, 602
NlaIV GGNNCC 3 cut(s) 145, 261, 556
NmuCI GTSAC 4 cut(s) 408, 506, 530, 541
NspI RCATGY 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 4 cut(s) 18, 349, 503, 554
PluTI GGCGCC 1 cut(s) 147
Ppu21I YACGTR 3 cut(s) 205, 610, 642
PspN4I GGNNCC 3 cut(s) 145, 261, 556
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
SaqAI TTAA 4 cut(s) 51, 186, 306, 485
SatI GCNGC 4 cut(s) 17, 348, 502, 553
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 597
SfoI GGCGCC 1 cut(s) 145
SmlI CTYRAG 2 cut(s) 283, 305
SmoI CTYRAG 2 cut(s) 283, 305
SnaBI TACGTA 1 cut(s) 642
Sse9I AATT 2 cut(s) 46, 199
SsiI CCGC 3 cut(s) 16, 501, 552
SspDI GGCGCC 1 cut(s) 143
SspI AATATT 1 cut(s) 301
SspMI CTAG 3 cut(s) 66, 581, 657
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 2 cut(s) 598, 656
TaaI ACNGT 3 cut(s) 36, 536, 676
TaiI ACGT 4 cut(s) 207, 410, 612, 644
TaqI TCGA 3 cut(s) 137, 223, 455
TasI AATT 2 cut(s) 46, 199
TauI GCSGC 3 cut(s) 19, 504, 555
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 4 cut(s) 51, 186, 306, 485
Tru9I TTAA 4 cut(s) 51, 186, 306, 485
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 4 cut(s) 408, 506, 530, 541
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 4 cut(s) 408, 506, 530, 541
TspRI CASTG 1 cut(s) 39
Vha464I CTTAAG 1 cut(s) 305
XapI RAATTY 1 cut(s) 46
XceI RCATGY 1 cut(s) 552
XmaJI CCTAGG 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 3 cut(s) 66, 581, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.