Rmu_sc0004553.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004553.1
OG0000195
Physical Location & Seq
Reverse (-)
54388 .. 55704
1317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004553.1_g000014.1.cds

Sequence Viewer

Length: 1260 bp
atggatcaatggagatatggatgggatgatcgcaggggatataagcaacaaagttataatggtgaaggttatcaagaatggaatccctatgccgagagtcctatgccttgttacaaccaaccttgtgctttgtgtaattctccgtggcattcaccttttgagtgttctttgaggtttgagtacccggattttatgcaagaatatgagtacaagatggggatgaagccatcacttgaagaacaactagctcaattggaagcctctaatgctcaattgcaagcctcccaagctcaatgtctagcctcccaagcgcgattgcacgctaaattggaagcctttaatgctcaattgcaagcttctcaagaaatgacttcacattccaatgagcaacttgagcctagtcttgagcaagagccaccattcactatttgtcatgagcaagattctttctttgatcaagtggagactaattcaagagaaggagtatattacgagcatcatgagcaagagttgcctattcaagatcgagaggatggtgttcatatacttgaaagtgtgattggttatggaaattttgaagcaagtgggttgagagactacacttcggaggaatcggtgcaatattggaaagctaatcttcacaatgaagatgaggtatatgaagttgattccgaagaagaggatagcttgtctagtgaggaggatgcggagcttgaagtgctacaccattatcccttaatccttgaggccgatattcctaaggaggaaaaaagtcctttaatgcattgtaatgataaagaagttgaagagacaaaggttttctctcctcccacatccaaggagatccatcatgagcttcccaaggtagagagtagaacattgagcacttatgttcttaatgagaaaattgagattaaagtacttttacctctcaatccaccattaagtggtcaatgtttctacaatgaggtgatggattggaaaggaagtggagcacttgcactcaccctttcccatcactctcaagagcttttaccacctattgttcctaagagcatcatttctacaccacttgagaaggagaaggcaaggtttgcccctagaagaaaaattgagaagaagaggaagattaagaagctacacttttggttaccaattggattattcatggatatctcttggtcttgcctctatgacacatcaaggattcccttagccccaaacaatagggtggtcgcacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

419

Amino Acids

48.62

Weight (kDa)

4.84

Isoelectric Point (pI)

60.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 947
AccII CGCG 1 cut(s) 313
AciI CCGC 1 cut(s) 707
AclWI GGATC 2 cut(s) 12, 838
AcsI RAATTY 1 cut(s) 571
AfaI GTAC 3 cut(s) 182, 209, 921
AfiI CCNNNNNNNGG 1 cut(s) 947
AgsI TTSAA 7 cut(s) 236, 474, 521, 551, 578, 716, 806
AjuI GAANNNNNNNTTGG 2 cut(s) 543, 575
AluBI AGCT 9 cut(s) 248, 290, 356, 632, 687, 712, 856, 1030, 1138
AluI AGCT 9 cut(s) 248, 290, 356, 632, 687, 712, 856, 1030, 1138
Alw21I GWGCWC 2 cut(s) 887, 997
Alw26I GTCTC 3 cut(s) 458, 588, 803
AlwI GGATC 2 cut(s) 12, 838
AoxI GGCC 1 cut(s) 747
ApoI RAATTY 1 cut(s) 571
AspLEI GCGC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 74, 144, 982, 997
AxyI CCTNAGG 1 cut(s) 759
Bbv12I GWGCWC 2 cut(s) 887, 997
BccI CCATC 7 cut(s) 15, 208, 235, 527, 855, 967, 1023
BciVI GTATCC 1 cut(s) 1260
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 3 cut(s) 458, 588, 803
BfaI CTAG 5 cut(s) 245, 299, 399, 693, 1101
BfuI GTATCC 1 cut(s) 1260
BmcAI AGTACT 1 cut(s) 921
Bme1390I CCNGG 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 3 cut(s) 505, 694, 1065
Bpu10I CCTNAGC 1 cut(s) 1213
BpuEI CTTGAG 6 cut(s) 345, 413, 425, 764, 1008, 1094
BpuMI CCSGG 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 143, 837, 861
Bsc4I CCNNNNNNNGG 1 cut(s) 947
Bse21I CCTNAGG 1 cut(s) 759
BseDI CCNNGG 3 cut(s) 143, 837, 861
BseGI GGATG 6 cut(s) 26, 31, 225, 538, 709, 833
BseLI CCNNNNNNNGG 1 cut(s) 947
BseRI GAGGAG 2 cut(s) 713, 816
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 1 cut(s) 749
BsiHKAI GWGCWC 2 cut(s) 887, 997
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 947
BsmAI GTCTC 3 cut(s) 458, 588, 803
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 749
Bsp1286I GDGCHC 2 cut(s) 887, 997
Bsp143I GATC 5 cut(s) 4, 28, 454, 523, 843
BspACI CCGC 1 cut(s) 707
BspANI GGCC 1 cut(s) 749
BspFNI CGCG 1 cut(s) 313
BspHI TCATGA 3 cut(s) 433, 499, 850
BspPI GGATC 2 cut(s) 12, 838
BssECI CCNNGG 3 cut(s) 143, 837, 861
BssMI GATC 5 cut(s) 4, 28, 454, 523, 843
BssT1I CCWWGG 2 cut(s) 837, 861
Bst6I CTCTTC 3 cut(s) 672, 801, 1115
BstAPI GCANNNNNTGC 2 cut(s) 511, 1094
BstC8I GCNNGC 3 cut(s) 279, 321, 354
BstDEI CTNAG 3 cut(s) 759, 1050, 1213
BstDSI CCRYGG 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 1149
BstF5I GGATG 6 cut(s) 26, 31, 225, 538, 709, 833
BstFNI CGCG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 5 cut(s) 7, 31, 457, 526, 846
BstMAI GTCTC 3 cut(s) 458, 588, 803
BstMBI GATC 5 cut(s) 4, 28, 454, 523, 843
BstMWI GCNNNNNNNGC 9 cut(s) 266, 287, 308, 341, 394, 502, 511, 718, 1094
BstPI GGTNACC 1 cut(s) 1149
BstSCI CCNGG 1 cut(s) 183
BstUI CGCG 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 843
BstYI RGATCY 1 cut(s) 843
Bsu36I CCTNAGG 1 cut(s) 759
BsuI GTATCC 1 cut(s) 1260
BsuRI GGCC 1 cut(s) 749
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 6 cut(s) 26, 31, 225, 538, 709, 833
Cac8I GCNNGC 3 cut(s) 279, 321, 354
CciI TCATGA 3 cut(s) 433, 499, 850
CfoI GCGC 1 cut(s) 313
Csp6I GTAC 3 cut(s) 181, 208, 920
CviAII CATG 4 cut(s) 434, 500, 851, 1168
CviQI GTAC 3 cut(s) 181, 208, 920
DdeI CTNAG 3 cut(s) 759, 1050, 1213
DpnI GATC 5 cut(s) 6, 30, 456, 525, 845
DpnII GATC 5 cut(s) 4, 28, 454, 523, 843
Eam1104I CTCTTC 3 cut(s) 672, 801, 1115
EarI CTCTTC 3 cut(s) 672, 801, 1115
Eco130I CCWWGG 2 cut(s) 837, 861
Eco32I GATATC 1 cut(s) 1174
Eco81I CCTNAGG 1 cut(s) 759
Eco91I GGTNACC 1 cut(s) 1149
EcoO65I GGTNACC 1 cut(s) 1149
EcoRV GATATC 1 cut(s) 1174
EcoT14I CCWWGG 2 cut(s) 837, 861
EcoT22I ATGCAT 1 cut(s) 786
ErhI CCWWGG 2 cut(s) 837, 861
FaeI CATG 4 cut(s) 437, 503, 854, 1171
FalI AAGNNNNNCTT 4 cut(s) 621, 653, 1127, 1159
FatI CATG 4 cut(s) 433, 499, 850, 1167
FbaI TGATCA 1 cut(s) 454
FokI GGATG 6 cut(s) 33, 38, 232, 545, 716, 820
FspBI CTAG 5 cut(s) 245, 299, 399, 693, 1101
GlaI GCGC 1 cut(s) 312
HaeIII GGCC 1 cut(s) 749
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 313
Hin1II CATG 4 cut(s) 437, 503, 854, 1171
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 6 cut(s) 82, 97, 443, 611, 668, 1207
HpaII CCGG 1 cut(s) 185
HphI GGTGA 4 cut(s) 74, 144, 982, 997
Hpy188I TCNGA 2 cut(s) 607, 673
HpyAV CCTTC 4 cut(s) 59, 473, 1072, 1078
HpyCH4V TGCA 7 cut(s) 196, 277, 319, 352, 619, 784, 1001
HpyF10VI GCNNNNNNNGC 9 cut(s) 266, 287, 308, 341, 394, 502, 511, 718, 1094
HpyF3I CTNAG 3 cut(s) 759, 1050, 1213
Hsp92II CATG 4 cut(s) 437, 503, 854, 1171
HspAI GCGC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 5 cut(s) 4, 28, 454, 523, 843
LmnI GCTCC 2 cut(s) 709, 992
LpnPI CCDG 2 cut(s) 19, 198
LweI GCATC 3 cut(s) 505, 694, 1065
MaeI CTAG 5 cut(s) 245, 299, 399, 693, 1101
MaeIII GTNAC 2 cut(s) 110, 1149
MalI GATC 5 cut(s) 6, 30, 456, 525, 845
MboI GATC 5 cut(s) 4, 28, 454, 523, 843
MfeI CAATTG 4 cut(s) 251, 272, 347, 1155
MflI RGATCY 1 cut(s) 843
MhlI GDGCHC 2 cut(s) 887, 997
MlyI GAGTC 1 cut(s) 106
Mph1103I ATGCAT 1 cut(s) 786
MseI TTAA 7 cut(s) 339, 737, 779, 897, 915, 944, 1131
MslI CAYNNNNRTG 2 cut(s) 381, 789
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 4 cut(s) 251, 272, 347, 1155
Mva1269I GAATGC 1 cut(s) 148
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 9 cut(s) 266, 287, 308, 341, 394, 502, 511, 718, 1094
NciI CCSGG 1 cut(s) 185
NdeII GATC 5 cut(s) 4, 28, 454, 523, 843
NlaIII CATG 4 cut(s) 437, 503, 854, 1171
NmeAIII GCCGAG 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 786
PagI TCATGA 3 cut(s) 433, 499, 850
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 5 cut(s) 82, 443, 611, 668, 1207
PflMI CCANNNNNTGG 1 cut(s) 947
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PsiI TTATAA 1 cut(s) 57
PspEI GGTNACC 1 cut(s) 1149
PsuI RGATCY 1 cut(s) 843
RsaI GTAC 3 cut(s) 182, 209, 921
RsaNI GTAC 3 cut(s) 181, 208, 920
RseI CAYNNNNRTG 2 cut(s) 381, 789
SaqAI TTAA 7 cut(s) 339, 737, 779, 897, 915, 944, 1131
Sau3AI GATC 5 cut(s) 4, 28, 454, 523, 843
ScaI AGTACT 1 cut(s) 921
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 2 cut(s) 887, 997
SfaNI GCATC 3 cut(s) 505, 694, 1065
SmiMI CAYNNNNRTG 2 cut(s) 381, 789
SmlI CTYRAG 7 cut(s) 360, 392, 404, 743, 1023, 1073, 1241
SmoI CTYRAG 7 cut(s) 360, 392, 404, 743, 1023, 1073, 1241
SsiI CCGC 1 cut(s) 707
SspI AATATT 1 cut(s) 623
SspMI CTAG 5 cut(s) 245, 299, 399, 693, 1101
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 837, 861
TaqI TCGA 1 cut(s) 526
TatI WGTACW 2 cut(s) 207, 919
TfiI GAWTC 5 cut(s) 82, 443, 611, 668, 1207
Tru1I TTAA 7 cut(s) 339, 737, 779, 897, 915, 944, 1131
Tru9I TTAA 7 cut(s) 339, 737, 779, 897, 915, 944, 1131
TspDTI ATGAA 5 cut(s) 236, 530, 660, 675, 1156
TspGWI ACGGA 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 947
XapI RAATTY 1 cut(s) 571
XspI CTAG 5 cut(s) 245, 299, 399, 693, 1101
ZrmI AGTACT 1 cut(s) 921
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.