Rroxscaffold_6G00388230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000195
Physical Location & Seq
Reverse (-)
1065514 .. 1072646
7133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388230.1

Sequence Viewer

Length: 2076 bp
ATGAAAGTAGCTAAGAGGAAACCTTGCAAAGGAAAAGCAATCGACGGGATGGATGATCTCTCCTTGATGGACAAGTTGATCAATGAGGGGGAGGATACACTCCATATTGATGCGGAAGTGGCCACGGGAAGGTCGACCGAACTAAGGAGGAGGGAGAAGAGGAAAAAGAAGCACCACCATCATCACCACCGGGATAGTGGGAAGGAGGAGGTAACTTACACCGGCAAGGATGTTGTGGGTTCCCGAGTGAAAAAGGCAAGGGTGAGCCACAATGTTGTACTAGGAACCTCACGAGCCTTGGGTATGTTAGCACCGATTGTCCCCGATCCCCAAGAAACCGAGGGCGGTATTGGAGAGGAGTGCCTTCGGTCTGTGGAGGAGTATAAGGGATCTTCGGTGTTAGTTGATATGTTGTTGGCTACACAGGAGAAAGGCATCAATGAGAAATTTTATGAATGGAATGCCTTTGGCTGGATTAATGCGGCGAAGATGAAAGGGGATGTTCTTGAGGTGAAGAGAAAAAGGCAAGAGGAAGAAGCTCGAAGGAGGCCGGGGCCTAGGGTGGTGCTTCCGAGAATGCGGTCACTATGGCTCACTCCTAATGCGCCGAGCAGCAACGTTGTGAACTGGGCATTTGAAACGAAGGAGTTAAACAACGACAAGTGTGGCCCATGGCCGACCATTGTACCGATCTGTCCCAACTTAACCACTGTTAAGTGTTGGGTTTTAATTACAAAAGGTCTCGGTACAATTGGGTGTGATCCACCCACTTATAAGGGATCTTTCCTCTCCAACACGCCCCCTCACGTGCAACCTATCTCTAGGTCTGCACCTATAAATGGGATGATCCTAGGGGATATGAGCAACAAAGTTATAATGGTGAAGGTTATCAAGAATGGAATCCCTATGCCCGAGAGTCCTATGCCTTGTTACAACCAACCTTGTGCTTTGTGTAATTCTCCATGGCATTCACCTTTTGATTGCTCATTGAGATTTGAGTACCCGAATTTTATGCGAGAGTATGAGTACAAGATGGGGATGTATCAAGAGACATTTGGACCCGAAGCATATCCTTATGAGCAAGCTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTAGCTCAATTGGAAGCTTCTACTGCTCAATTGCAAGCCTCCCAAGCTCAATGTCTAGCCTCCCAAGCTCGATTGCATGCTAAATTGGAAGCCTTCAATGCCCAAGTGCAAGCTTCTCAAGAAATGACTTCACATTCCAATGAGAAACTTGAGCCTAGTTTTGCACAAGAGCCACCCTTCACCATTTCTCATGAGCAAGATTCTTTCTTTGACCAAGTAGAGCCTAATTCAAGAGAAGGAGTATTTTATGAGCATCATAAGCTAGAGTTGCCTATTCAAGATCAAGAGTGTGATGCTCATATACAAGAAAGTGTGCTTGATTGTGGAAATTTTGATGCAAGTGAGATGAGAAACTACATTTCAGAGGAACCAGTGCAATATTGGAAATCTAATCTTCACAATGAAGATGAGTTGATTCCCGAAGAAGAGGATAGCTTGTCTAGTGAGGAGGATGCGGAGATTGAAGAGCTACACCATGATCCCTTAATCCTTGAGGCCGATATTCCCAAGGAGGAAGAAAGTCCTTTAATGCATTGTAATAATAAAGAAGTTGAAGAGACAAAAGTTTTCTCTCCTCCTACATCCACGAAGATCCATCATGTGCTTCCCAAGGTAGAGAGTAAAACATTGAGCACTTATGTTCTTAATGAGAAGATTGAGATTAAGGTGATGGATTGGAAAGGAAGTGGAGCACTTGCACTCACTATTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTAAGAGCATTATTTCTACATCACTTGCGAAGGAGAATGCAAGGCTGGCTTCTAGAAGAAAAATAGAGAAGAGGAGGAAGATTAAGAAGCTACACTTTTGGTCACCCATTGGAATCTTCATGGATAGCTCTTGGTCTTGCCTCTATGACATGTCAAGGAGTCCCTTAGCGCCTAACAATAGGGTGGTCGCGCTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

691

Amino Acids

78.44

Weight (kDa)

5.92

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 774, 875
AccI GTMKAC 1 cut(s) 134
AccII CGCG 1 cut(s) 2054
AciI CCGC 5 cut(s) 113, 345, 482, 580, 1574
AclI AACGTT 1 cut(s) 618
AclWI GGATC 7 cut(s) 320, 397, 755, 787, 841, 1592, 1705
AcoI YGGCCR 2 cut(s) 120, 674
AcsI RAATTY 3 cut(s) 446, 1006, 1447
AcvI CACGTG 1 cut(s) 808
AfaI GTAC 5 cut(s) 279, 687, 748, 1001, 1028
AfiI CCNNNNNNNGG 5 cut(s) 29, 129, 144, 471, 839
AflIII ACRYGT 1 cut(s) 2013
AgsI TTSAA 7 cut(s) 638, 1112, 1216, 1350, 1397, 1583, 1673
Alw21I GWGCWC 2 cut(s) 1754, 1813
Alw26I GTCTC 3 cut(s) 746, 1043, 1670
AlwI GGATC 7 cut(s) 320, 397, 755, 787, 841, 1592, 1705
Ama87I CYCGRG 2 cut(s) 243, 911
AoxI GGCC 6 cut(s) 120, 548, 554, 667, 674, 1614
ApeKI GCWGC 1 cut(s) 612
ApoI RAATTY 3 cut(s) 446, 1006, 1447
AseI ATTAAT 1 cut(s) 477
AspA2I CCTAGG 3 cut(s) 557, 850, 1094
AspLEI GCGC 3 cut(s) 607, 2035, 2056
AspS9I GGNCC 3 cut(s) 554, 668, 1058
AsuC2I CCSGG 2 cut(s) 191, 552
AsuHPI GGTGA 8 cut(s) 176, 274, 523, 892, 963, 1291, 1798, 1959
AvaI CYCGRG 2 cut(s) 243, 911
AvaII GGWCC 1 cut(s) 1058
AvrII CCTAGG 3 cut(s) 557, 850, 1094
BaeI ACNNNNGTAYC 2 cut(s) 669, 702
BalI TGGCCA 1 cut(s) 122
BauI CACGAG 1 cut(s) 291
BbrPI CACGTG 1 cut(s) 808
Bbv12I GWGCWC 2 cut(s) 1754, 1813
BbvI GCAGC 1 cut(s) 624
BccI CCATC 8 cut(s) 43, 61, 186, 1027, 1111, 1722, 1783, 1839
BcgI CGANNNNNNTGC 2 cut(s) 994, 1028
BciVI GTATCC 2 cut(s) 88, 2076
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 2 cut(s) 191, 552
BcoDI GTCTC 3 cut(s) 746, 1043, 1670
BfoI RGCGCY 1 cut(s) 2036
BfuI GTATCC 2 cut(s) 88, 2076
BisI GCNGC 2 cut(s) 483, 613
BlnI CCTAGG 3 cut(s) 557, 850, 1094
BlsI GCNGC 2 cut(s) 484, 614
Bme1390I CCNGG 2 cut(s) 191, 552
Bme18I GGWCC 1 cut(s) 1058
BmeT110I CYCGRG 2 cut(s) 243, 911
BmgT120I GGNCC 3 cut(s) 554, 668, 1058
BmiI GGNNCC 5 cut(s) 241, 286, 555, 1060, 1488
BmrFI CCNGG 2 cut(s) 191, 552
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 6 cut(s) 100, 444, 1381, 1402, 1444, 1561
BmuI ACTGGG 1 cut(s) 637
Bpu10I CCTNAGC 1 cut(s) 2029
BpuEI CTTGAG 5 cut(s) 527, 1221, 1289, 1631, 1824
BpuMI CCSGG 2 cut(s) 191, 552
BsaAI YACGTR 1 cut(s) 808
BsaI GGTCTC 1 cut(s) 746
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 129, 144, 471, 839
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 632, 1490
BseGI GGATG 8 cut(s) 54, 58, 235, 505, 849, 1044, 1576, 1700
BseLI CCNNNNNNNGG 5 cut(s) 29, 129, 144, 471, 839
BseNI ACTGG 2 cut(s) 632, 1490
BseRI GAGGAG 7 cut(s) 163, 221, 371, 392, 1580, 1683, 1951
BseXI GCAGC 1 cut(s) 624
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 2054
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 6 cut(s) 122, 550, 556, 669, 676, 1616
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 1754, 1813
BsiHKCI CYCGRG 2 cut(s) 243, 911
BsiSI CCGG 3 cut(s) 190, 222, 551
BslFI GGGAC 3 cut(s) 305, 681, 2010
BslI CCNNNNNNNGG 5 cut(s) 29, 129, 144, 471, 839
BsmAI GTCTC 3 cut(s) 746, 1043, 1670
BsmFI GGGAC 3 cut(s) 305, 681, 2010
BsmI GAATGC 4 cut(s) 466, 582, 967, 1906
BsnI GGCC 6 cut(s) 122, 550, 556, 669, 676, 1616
Bso31I GGTCTC 1 cut(s) 746
BsoBI CYCGRG 2 cut(s) 243, 911
Bsp1286I GDGCHC 2 cut(s) 1754, 1813
Bsp19I CCATGG 2 cut(s) 671, 962
BspACI CCGC 5 cut(s) 113, 345, 482, 580, 1574
BspANI GGCC 6 cut(s) 122, 550, 556, 669, 676, 1616
BspFNI CGCG 1 cut(s) 2054
BspHI TCATGA 1 cut(s) 1309
BspLI GGNNCC 5 cut(s) 241, 286, 555, 1060, 1488
BspPI GGATC 7 cut(s) 320, 397, 755, 787, 841, 1592, 1705
BspQI GCTCTTC 1 cut(s) 1578
BspTNI GGTCTC 1 cut(s) 746
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 2 cut(s) 632, 1490
BssAI RCCGGY 1 cut(s) 221
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 8 cut(s) 297, 557, 671, 850, 962, 1094, 1626, 1728
Bst2BI CACGAG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 712
Bst6I CTCTTC 6 cut(s) 152, 509, 1539, 1578, 1668, 1928
BstBAI YACGTR 1 cut(s) 808
BstC8I GCNNGC 5 cut(s) 1083, 1155, 1197, 1230, 1911
BstDEI CTNAG 4 cut(s) 12, 143, 1866, 2029
BstDSI CCRYGG 3 cut(s) 123, 671, 962
BstEII GGTNACC 1 cut(s) 1965
BstENI CCTNNNNNAGG 1 cut(s) 27
BstF5I GGATG 8 cut(s) 54, 58, 235, 505, 849, 1044, 1576, 1700
BstFNI CGCG 1 cut(s) 2054
BstH2I RGCGCY 1 cut(s) 2036
BstHHI GCGC 3 cut(s) 607, 2035, 2056
BstMAI GTCTC 3 cut(s) 746, 1043, 1670
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 9 cut(s) 119, 1099, 1142, 1163, 1184, 1217, 1378, 1387, 1910
BstNSI RCATGY 2 cut(s) 1199, 2017
BstPI GGTNACC 1 cut(s) 1965
BstSCI CCNGG 2 cut(s) 189, 550
BstUI CGCG 1 cut(s) 2054
BstV1I GCAGC 1 cut(s) 624
BstX2I RGATCY 3 cut(s) 389, 779, 1710
BstYI RGATCY 3 cut(s) 389, 779, 1710
BsuI GTATCC 2 cut(s) 88, 2076
BsuRI GGCC 6 cut(s) 122, 550, 556, 669, 676, 1616
BtgI CCRYGG 3 cut(s) 123, 671, 962
BtsCI GGATG 8 cut(s) 54, 58, 235, 505, 849, 1044, 1576, 1700
BtsIMutI CAGTG 2 cut(s) 708, 1497
Cac8I GCNNGC 5 cut(s) 1083, 1155, 1197, 1230, 1911
CciI TCATGA 1 cut(s) 1309
CfoI GCGC 3 cut(s) 607, 2035, 2056
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 3 cut(s) 554, 668, 1058
Csp6I GTAC 5 cut(s) 278, 686, 747, 1000, 1027
CviAII CATG 8 cut(s) 672, 963, 1196, 1310, 1595, 1718, 1984, 2014
CviQI GTAC 5 cut(s) 278, 686, 747, 1000, 1027
DdeI CTNAG 4 cut(s) 12, 143, 1866, 2029
EaeI YGGCCR 2 cut(s) 120, 674
Eam1104I CTCTTC 6 cut(s) 152, 509, 1539, 1578, 1668, 1928
EarI CTCTTC 6 cut(s) 152, 509, 1539, 1578, 1668, 1928
Eco130I CCWWGG 8 cut(s) 297, 557, 671, 850, 962, 1094, 1626, 1728
Eco31I GGTCTC 1 cut(s) 746
Eco47I GGWCC 1 cut(s) 1058
Eco72I CACGTG 1 cut(s) 808
Eco88I CYCGRG 2 cut(s) 243, 911
Eco91I GGTNACC 1 cut(s) 1965
EcoNI CCTNNNNNAGG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 554
EcoO65I GGTNACC 1 cut(s) 1965
EcoT14I CCWWGG 8 cut(s) 297, 557, 671, 850, 962, 1094, 1626, 1728
EcoT22I ATGCAT 1 cut(s) 1653
ErhI CCWWGG 8 cut(s) 297, 557, 671, 850, 962, 1094, 1626, 1728
FaeI CATG 8 cut(s) 675, 966, 1199, 1313, 1598, 1721, 1987, 2017
FalI AAGNNNNNCTT 4 cut(s) 1897, 1929, 1943, 1975
FaqI GGGAC 3 cut(s) 305, 681, 2010
FatI CATG 8 cut(s) 671, 962, 1195, 1309, 1594, 1717, 1983, 2013
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 483, 613
FokI GGATG 8 cut(s) 61, 65, 242, 512, 856, 1051, 1583, 1687
Fsp4HI GCNGC 2 cut(s) 483, 613
GlaI GCGC 3 cut(s) 606, 2034, 2055
GluI GCNGC 2 cut(s) 483, 613
HaeII RGCGCY 1 cut(s) 2036
HaeIII GGCC 6 cut(s) 122, 550, 556, 669, 676, 1616
HapII CCGG 3 cut(s) 190, 222, 551
HhaI GCGC 3 cut(s) 607, 2035, 2056
Hin1II CATG 8 cut(s) 675, 966, 1199, 1313, 1598, 1721, 1987, 2017
Hin6I GCGC 3 cut(s) 605, 2033, 2054
HinP1I GCGC 3 cut(s) 605, 2033, 2054
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HindIII AAGCTT 3 cut(s) 1083, 1134, 1230
HinfI GANTC 6 cut(s) 900, 916, 1319, 1534, 1977, 2023
HpaII CCGG 3 cut(s) 190, 222, 551
HphI GGTGA 8 cut(s) 176, 274, 523, 892, 963, 1291, 1798, 1959
Hpy166II GTNNAC 2 cut(s) 135, 625
Hpy188I TCNGA 2 cut(s) 573, 1483
Hpy8I GTNNAC 2 cut(s) 135, 625
Hpy99I CGWCG 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 712
HpyCH4IV ACGT 2 cut(s) 618, 807
HpyF10VI GCNNNNNNNGC 9 cut(s) 119, 1099, 1142, 1163, 1184, 1217, 1378, 1387, 1910
HpyF3I CTNAG 4 cut(s) 12, 143, 1866, 2029
HpySE526I ACGT 2 cut(s) 618, 807
Hsp92II CATG 8 cut(s) 675, 966, 1199, 1313, 1598, 1721, 1987, 2017
HspAI GCGC 3 cut(s) 605, 2033, 2054
Ksp22I TGATCA 1 cut(s) 78
LguI GCTCTTC 1 cut(s) 1578
LmnI GCTCC 1 cut(s) 1808
LpnPI CCDG 8 cut(s) 203, 235, 410, 457, 564, 613, 1503, 1895
Lsp1109I GCAGC 1 cut(s) 624
LweI GCATC 6 cut(s) 100, 444, 1381, 1402, 1444, 1561
MaeII ACGT 2 cut(s) 618, 807
MaeIII GTNAC 4 cut(s) 211, 582, 929, 1965
MfeI CAATTG 3 cut(s) 750, 1127, 1148
MflI RGATCY 3 cut(s) 389, 779, 1710
MhlI GDGCHC 2 cut(s) 1754, 1813
MlsI TGGCCA 1 cut(s) 122
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 2 cut(s) 925, 2032
MmeI TCCRAC 1 cut(s) 816
Mox20I TGGCCA 1 cut(s) 122
Mph1103I ATGCAT 1 cut(s) 1653
MscI TGGCCA 1 cut(s) 122
MslI CAYNNNNRTG 2 cut(s) 108, 1257
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 3 cut(s) 190, 222, 551
MspR9I CCNGG 2 cut(s) 191, 552
MunI CAATTG 3 cut(s) 750, 1127, 1148
Mva1269I GAATGC 4 cut(s) 466, 582, 967, 1906
MvnI CGCG 1 cut(s) 2054
MwoI GCNNNNNNNGC 9 cut(s) 119, 1099, 1142, 1163, 1184, 1217, 1378, 1387, 1910
NciI CCSGG 2 cut(s) 191, 552
NcoI CCATGG 2 cut(s) 671, 962
NlaIII CATG 8 cut(s) 675, 966, 1199, 1313, 1598, 1721, 1987, 2017
NlaIV GGNNCC 5 cut(s) 241, 286, 555, 1060, 1488
NmeAIII GCCGAG 1 cut(s) 633
NmuCI GTSAC 2 cut(s) 582, 1965
NsiI ATGCAT 1 cut(s) 1653
NspI RCATGY 2 cut(s) 1199, 2017
PaeI GCATGC 1 cut(s) 1199
PagI TCATGA 1 cut(s) 1309
PciI ACATGT 1 cut(s) 2013
PciSI GCTCTTC 1 cut(s) 1578
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PctI GAATGC 4 cut(s) 466, 582, 967, 1906
PfeI GAWTC 4 cut(s) 900, 1319, 1534, 1977
PkrI GCNGC 2 cut(s) 484, 614
PleI GAGTC 2 cut(s) 924, 2031
PmaCI CACGTG 1 cut(s) 808
PmlI CACGTG 1 cut(s) 808
PpsI GAGTC 2 cut(s) 924, 2031
Ppu21I YACGTR 1 cut(s) 808
PscI ACATGT 1 cut(s) 2013
PshBI ATTAAT 1 cut(s) 477
PsiI TTATAA 2 cut(s) 774, 875
Psp1406I AACGTT 1 cut(s) 618
PspCI CACGTG 1 cut(s) 808
PspEI GGTNACC 1 cut(s) 1965
PspN4I GGNNCC 5 cut(s) 241, 286, 555, 1060, 1488
PspPI GGNCC 3 cut(s) 554, 668, 1058
PsuI RGATCY 3 cut(s) 389, 779, 1710
RsaI GTAC 5 cut(s) 279, 687, 748, 1001, 1028
RsaNI GTAC 5 cut(s) 278, 686, 747, 1000, 1027
RseI CAYNNNNRTG 2 cut(s) 108, 1257
SalI GTCGAC 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 1578
SatI GCNGC 2 cut(s) 483, 613
Sau96I GGNCC 3 cut(s) 554, 668, 1058
SchI GAGTC 2 cut(s) 925, 2032
ScrFI CCNGG 2 cut(s) 191, 552
SduI GDGCHC 2 cut(s) 1754, 1813
SfaNI GCATC 6 cut(s) 100, 444, 1381, 1402, 1444, 1561
SinI GGWCC 1 cut(s) 1058
SmiMI CAYNNNNRTG 2 cut(s) 108, 1257
SmlI CTYRAG 6 cut(s) 506, 1236, 1268, 1610, 1839, 2057
SmoI CTYRAG 6 cut(s) 506, 1236, 1268, 1610, 1839, 2057
SphI GCATGC 1 cut(s) 1199
SsiI CCGC 5 cut(s) 113, 345, 482, 580, 1574
SspI AATATT 1 cut(s) 1499
StyD4I CCNGG 2 cut(s) 189, 550
StyI CCWWGG 8 cut(s) 297, 557, 671, 850, 962, 1094, 1626, 1728
TaaI ACNGT 1 cut(s) 712
TaiI ACGT 2 cut(s) 621, 810
TaqI TCGA 4 cut(s) 42, 134, 541, 1189
TaqII GACCGA 2 cut(s) 152, 357
TatI WGTACW 2 cut(s) 277, 1026
TauI GCSGC 1 cut(s) 485
TfiI GAWTC 4 cut(s) 900, 1319, 1534, 1977
TscAI CASTG 2 cut(s) 715, 1497
TseFI GTSAC 2 cut(s) 582, 1965
TseI GCWGC 1 cut(s) 612
Tsp45I GTSAC 2 cut(s) 582, 1965
TspDTI ATGAA 5 cut(s) 17, 468, 506, 1536, 1972
TspRI CASTG 2 cut(s) 715, 1497
VpaK11BI GGWCC 1 cut(s) 1058
VspI ATTAAT 1 cut(s) 477
XagI CCTNNNNNAGG 1 cut(s) 27
XapI RAATTY 3 cut(s) 446, 1006, 1447
XbaI TCTAGA 1 cut(s) 1916
XceI RCATGY 2 cut(s) 1199, 2017
XcmI CCANNNNNNNNNTGG 2 cut(s) 194, 1497
XmaJI CCTAGG 3 cut(s) 557, 850, 1094
XmiI GTMKAC 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 1653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.