Rroxscaffold_3G00223380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000195
Physical Location & Seq
Forward (+)
6480544 .. 6481585
1042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223380.1

Sequence Viewer

Length: 780 bp
ATGGATCAATGGAGTTATGGATGGGAAGACCCAATGAGATATGAGCAACATCCTCAAGATCAAGCTTACAAACCTACAAATTCATCCATTGAAGGATTGTTTGCTCAATTCAAAGCTATAAGTGAGAGTGTAGATCCAATCATGGAGCAAGTCAATGCTAGCCTACTTCAAGAGCAACCTCCCACCACTTTATATTTGCAAGAGTCTTTCTTTGACCAAGTGAAGCCTATTTCAAGAGAAGTCTATATCGAGCATCTTGAGCAAGAGTCTTGTATTCTAGTTGAAGATGATGATAGTAATGTTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTTCAATGCAAATATTCTCACGGAGGAAGATAGTCCTTCAATACTTTGTGATGATGAAGAAATTGAAGAGCCAAGGAATTTCTTGCCTTCTACATCCACGGTGATCCATCATGAGCTTCCCAAGGTAGAGAATAGAACATTGAGCACTTATGTTCTTGATGAGAAGATTGAGATCAAGGCACTTTTACCTCTCAATCCACCGTTTAGTGACCAATGTTTCTATAATGAGGTGATGGATTGGAAAGGAAATGGAGCACTTGCACTCACCGTTTCCCATCACTCTCAAGAGCTTCTACCACCTATTGTGCCTATGAGCATCATTTCTACACCACTTGAGAAGGAGAAGGCAAGGAGATTGATTCATAGAAGAAAAATCAAGAAGAAGAGGAAAATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.96

Weight (kDa)

4.79

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 755
AclWI GGATC 3 cut(s) 12, 128, 433
AcoI YGGCCR 1 cut(s) 746
AcsI RAATTY 2 cut(s) 79, 412
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 755
AgsI TTSAA 8 cut(s) 92, 112, 170, 234, 284, 340, 375, 401
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AluBI AGCT 7 cut(s) 65, 116, 322, 451, 625, 736, 774
AluI AGCT 7 cut(s) 65, 116, 322, 451, 625, 736, 774
Alw21I GWGCWC 2 cut(s) 482, 592
AlwI GGATC 3 cut(s) 12, 128, 433
AoxI GGCC 1 cut(s) 746
ApoI RAATTY 2 cut(s) 79, 412
AsuHPI GGTGA 3 cut(s) 448, 577, 592
AsuNHI GCTAGC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 482, 592
BccI CCATC 4 cut(s) 15, 450, 562, 618
BfaI CTAG 2 cut(s) 159, 278
BmsI GCATC 2 cut(s) 262, 660
BmtI GCTAGC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 4 cut(s) 39, 278, 603, 689
BsaBI GATNNNNATC 1 cut(s) 506
BsaJI CCNNGG 3 cut(s) 407, 432, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse8I GATNNNNATC 1 cut(s) 506
BseDI CCNNGG 3 cut(s) 407, 432, 456
BseGI GGATG 4 cut(s) 26, 49, 83, 428
BseJI GATNNNNATC 1 cut(s) 506
BseLI CCNNNNNNNGG 1 cut(s) 755
BshFI GGCC 1 cut(s) 748
BsiHKAI GWGCWC 2 cut(s) 482, 592
BslI CCNNNNNNNGG 1 cut(s) 755
BsnI GGCC 1 cut(s) 748
Bsp1286I GDGCHC 2 cut(s) 482, 592
Bsp1407I TGTACA 1 cut(s) 307
Bsp143I GATC 5 cut(s) 4, 58, 133, 438, 507
BspANI GGCC 1 cut(s) 748
BspHI TCATGA 1 cut(s) 445
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 3 cut(s) 12, 128, 433
BspQI GCTCTTC 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 307
BssECI CCNNGG 3 cut(s) 407, 432, 456
BssMI GATC 5 cut(s) 4, 58, 133, 438, 507
BssT1I CCWWGG 2 cut(s) 407, 456
Bst4CI ACNGT 3 cut(s) 436, 537, 604
Bst6I CTCTTC 2 cut(s) 396, 713
BstAUI TGTACA 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 777
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 4 cut(s) 26, 49, 83, 428
BstKTI GATC 5 cut(s) 7, 61, 136, 441, 510
BstMBI GATC 5 cut(s) 4, 58, 133, 438, 507
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 748
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 4 cut(s) 26, 49, 83, 428
Cac8I GCNNGC 1 cut(s) 160
CciI TCATGA 1 cut(s) 445
Csp6I GTAC 1 cut(s) 308
CviAII CATG 2 cut(s) 142, 446
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 1 cut(s) 777
DpnI GATC 5 cut(s) 6, 60, 135, 440, 509
DpnII GATC 5 cut(s) 4, 58, 133, 438, 507
EaeI YGGCCR 1 cut(s) 746
Eam1104I CTCTTC 2 cut(s) 396, 713
EarI CTCTTC 2 cut(s) 396, 713
Eco130I CCWWGG 2 cut(s) 407, 456
EcoT14I CCWWGG 2 cut(s) 407, 456
ErhI CCWWGG 2 cut(s) 407, 456
FaeI CATG 2 cut(s) 145, 449
FalI AAGNNNNNCTT 2 cut(s) 725, 757
FatI CATG 2 cut(s) 141, 445
FokI GGATG 4 cut(s) 33, 36, 70, 415
FspBI CTAG 2 cut(s) 159, 278
HaeIII GGCC 1 cut(s) 748
Hin1II CATG 2 cut(s) 145, 449
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 3 cut(s) 203, 266, 694
HphI GGTGA 3 cut(s) 448, 577, 592
Hpy188III TCNNGA 8 cut(s) 56, 170, 234, 257, 446, 491, 620, 712
HpyAV CCTTC 5 cut(s) 86, 381, 432, 667, 673
HpyCH4III ACNGT 3 cut(s) 436, 537, 604
HpyCH4V TGCA 3 cut(s) 199, 344, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 1 cut(s) 777
Hsp92II CATG 2 cut(s) 145, 449
Kzo9I GATC 5 cut(s) 4, 58, 133, 438, 507
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 2 cut(s) 145, 587
LweI GCATC 2 cut(s) 262, 660
MaeI CTAG 2 cut(s) 159, 278
MaeIII GTNAC 1 cut(s) 542
MalI GATC 5 cut(s) 6, 60, 135, 440, 509
MboI GATC 5 cut(s) 4, 58, 133, 438, 507
MboII GAAGA 9 cut(s) 38, 296, 374, 404, 413, 511, 714, 727, 730
MfeI CAATTG 1 cut(s) 753
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 482, 592
MlsI TGGCCA 1 cut(s) 748
MluCI AATT 6 cut(s) 79, 107, 396, 412, 726, 753
MluNI TGGCCA 1 cut(s) 748
MlyI GAGTC 2 cut(s) 212, 275
MnlI CCTC 6 cut(s) 63, 189, 352, 534, 556, 714
Mox20I TGGCCA 1 cut(s) 748
MscI TGGCCA 1 cut(s) 748
MseI TTAA 1 cut(s) 729
Msp20I TGGCCA 1 cut(s) 748
MunI CAATTG 1 cut(s) 753
MwoI GCNNNNNNNGC 1 cut(s) 259
NdeII GATC 5 cut(s) 4, 58, 133, 438, 507
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 145, 449
NmuCI GTSAC 1 cut(s) 542
PagI TCATGA 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 694
PflMI CCANNNNNTGG 1 cut(s) 755
PleI GAGTC 2 cut(s) 211, 274
PpsI GAGTC 2 cut(s) 211, 274
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 1 cut(s) 729
Sau3AI GATC 5 cut(s) 4, 58, 133, 438, 507
SchI GAGTC 2 cut(s) 212, 275
SduI GDGCHC 2 cut(s) 482, 592
SfaNI GCATC 2 cut(s) 262, 660
SmlI CTYRAG 4 cut(s) 54, 257, 618, 668
SmoI CTYRAG 4 cut(s) 54, 257, 618, 668
Sse9I AATT 6 cut(s) 79, 107, 396, 412, 726, 753
SspI AATATT 1 cut(s) 349
SspMI CTAG 2 cut(s) 159, 278
StyI CCWWGG 2 cut(s) 407, 456
TaaI ACNGT 3 cut(s) 436, 537, 604
TaqI TCGA 1 cut(s) 249
TasI AATT 6 cut(s) 79, 107, 396, 412, 726, 753
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 1 cut(s) 694
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TseFI GTSAC 1 cut(s) 542
Tsp45I GTSAC 1 cut(s) 542
TspDTI ATGAA 4 cut(s) 72, 345, 405, 686
TspGWI ACGGA 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 755
XapI RAATTY 2 cut(s) 79, 412
XspI CTAG 2 cut(s) 159, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.