Rroxscaffold_6G00393500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000195
Physical Location & Seq
Reverse (-)
13625474 .. 13630097
4624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393500.1

Sequence Viewer

Length: 1362 bp
ATGGCCACGACTTGCTGGGCTGCGCCTCGCATGCTTGCACAAACTCAATTGCAAGCCTCCCGAGATCTATTACAAGCCTCCCAAGATAGAATTTCACAAGAGACCGTGGTTCCTGAAGCATATCCTCATGAGCAAGTGTATGAGTCTAGGAGGCCTTCTCTTGAAGAATTGCTAGCTCAATTGCAAGCATCCCAAGCTCGATTGCAAGCTTCTCAAGAAATGCTTATACATTCCAATGATCAACTTGAAGCAAGTTTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGATCAAGTGGAGCCTATTTCAAGAGAAGAAGTGTATATCGAGCATCTTGAGCAAGAGTATTTTATGCAAGTTGAAGATGATTATAGTGATGTAGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTCCAATGCAAGTAGGGTGAGAGACTACACTTTGGAGGAATGGGTGCAATTTTGGAAATCTAAGCTTCCAAATGAAGGTGAGATATTTGAAGATGATTCCGAAGAAGATGATGTCTTGTCTAGTGAGGAGGATGCAGAGCTTGAAGTTATACACCATAATCCCGATGCAGAGCTTGAAGTTATACACCATAATCCCTTATTCATCGAGGAGGATGCGGAGCTTGGAGTAATACACCATAATCCCTTATTCATCGAGGAGGATGCAGAGCTTGGAGAGGATGCGGAGCTTGAAGTAATACACCGTAATCCCTTATTCATCGAGGAGGATGCGGAGCTTGAAGTTATACACCATAATCCCTTGTTCATCGAGGAGGATGTGGAGCTTGAAGTAATACACCATAATCCCTTATTCATTGAGGTAGATATTCTCATGGAGGAAGAGAGTCCTTCAATACTTTGTGATGATGAAAAAATTGAAGAGCCAAGGACTTTCTCGCCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGATTGTAGAATACCGAGCACTTGCGTTATTCATGAGAGGATTGGGATCAAGGTACTTTTACCTCCCAATCCATCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATTGGGTACTTGCACTCACCCTTTCCCATCACTCTCAAGAGCTTCTACTACCTATTGTTCCTATGAGCATCATTTGTAATCCACTTGAGAAGGAGAAGGCAAGGTTGGCTCCTACAAGAATAATTAAGAAGAATAGGAAGATTAAGAAGCTACACTTTTGGCCACCAATAATTGGAATATTCATAGTTAGCTCTTGGTCTTGCCTCTATGATATGTCAAGGACTCCCTTAGCCCCAAACAATAAGGTGGTCGCACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

453

Amino Acids

52.42

Weight (kDa)

4.47

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1259
AciI CCGC 3 cut(s) 644, 710, 758
AclWI GGATC 2 cut(s) 937, 1019
AcoI YGGCCR 2 cut(s) 3, 1247
AcsI RAATTY 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 3 cut(s) 402, 1020, 1095
AfiI CCNNNNNNNGG 2 cut(s) 503, 1259
AjuI GAANNNNNNNTTGG 4 cut(s) 399, 431, 1175, 1207
Alw21I GWGCWC 1 cut(s) 986
Alw26I GTCTC 2 cut(s) 95, 444
AlwI GGATC 2 cut(s) 937, 1019
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 3 cut(s) 3, 152, 1247
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 90
AspLEI GCGC 1 cut(s) 25
AsuHPI GGTGA 5 cut(s) 268, 457, 518, 1081, 1096
AsuNHI GCTAGC 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 60
BalI TGGCCA 2 cut(s) 5, 1249
Bbv12I GWGCWC 1 cut(s) 986
BbvI GCAGC 1 cut(s) 7
BccI CCATC 4 cut(s) 954, 1045, 1066, 1122
BcgI CGANNNNNNTGC 6 cut(s) 623, 657, 671, 705, 737, 771
BciVI GTATCC 1 cut(s) 1362
BclI TGATCA 2 cut(s) 238, 304
BcoDI GTCTC 2 cut(s) 95, 444
BfaI CTAG 3 cut(s) 147, 173, 549
BfuI GTATCC 1 cut(s) 1362
BglII AGATCT 1 cut(s) 64
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 3 cut(s) 111, 315, 1197
BmsI GCATC 9 cut(s) 197, 355, 550, 583, 631, 679, 697, 745, 1164
BmtI GCTAGC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 142, 174
Bpu10I CCTNAGC 1 cut(s) 1315
BpuEI CTTGAG 4 cut(s) 198, 371, 1107, 1193
BsaBI GATNNNNATC 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 4 cut(s) 105, 911, 936, 960
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 1259
Bse8I GATNNNNATC 1 cut(s) 1010
BseDI CCNNGG 4 cut(s) 105, 911, 936, 960
BseGI GGATG 8 cut(s) 188, 565, 646, 694, 712, 760, 808, 932
BseJI GATNNNNATC 1 cut(s) 1010
BseLI CCNNNNNNNGG 2 cut(s) 503, 1259
BseRI GAGGAG 5 cut(s) 569, 650, 698, 764, 812
BseXI GCAGC 1 cut(s) 7
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 3 cut(s) 5, 154, 1249
BsiHKAI GWGCWC 1 cut(s) 986
BsiHKCI CYCGRG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 503, 1259
BsmAI GTCTC 2 cut(s) 95, 444
BsnI GGCC 3 cut(s) 5, 154, 1249
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 986
Bsp1407I TGTACA 1 cut(s) 400
Bsp143I GATC 5 cut(s) 64, 238, 304, 942, 1011
Bsp19I CCATGG 1 cut(s) 936
BspACI CCGC 3 cut(s) 644, 710, 758
BspANI GGCC 3 cut(s) 5, 154, 1249
BspHI TCATGA 3 cut(s) 127, 949, 997
BspLI GGNNCC 3 cut(s) 111, 315, 1197
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 2 cut(s) 937, 1019
BspQI GCTCTTC 1 cut(s) 900
BspTNI GGTCTC 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 400
BssECI CCNNGG 4 cut(s) 105, 911, 936, 960
BssMI GATC 5 cut(s) 64, 238, 304, 942, 1011
BssT1I CCWWGG 3 cut(s) 911, 936, 960
Bst4CI ACNGT 2 cut(s) 106, 731
Bst6I CTCTTC 2 cut(s) 861, 900
BstAPI GCANNNNNTGC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 400
BstC8I GCNNGC 6 cut(s) 32, 36, 54, 174, 186, 207
BstDEI CTNAG 2 cut(s) 489, 1315
BstDSI CCRYGG 2 cut(s) 105, 936
BstF5I GGATG 8 cut(s) 188, 565, 646, 694, 712, 760, 808, 932
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 5 cut(s) 67, 241, 307, 945, 1014
BstMAI GTCTC 2 cut(s) 95, 444
BstMBI GATC 5 cut(s) 64, 238, 304, 942, 1011
BstMWI GCNNNNNNNGC 5 cut(s) 31, 194, 257, 352, 1193
BstNSI RCATGY 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 64, 942
BstXI CCANNNNNNTGG 1 cut(s) 937
BstYI RGATCY 2 cut(s) 64, 942
BsuI GTATCC 1 cut(s) 1362
BsuRI GGCC 3 cut(s) 5, 154, 1249
BtgI CCRYGG 2 cut(s) 105, 936
BtsCI GGATG 8 cut(s) 188, 565, 646, 694, 712, 760, 808, 932
Cac8I GCNNGC 6 cut(s) 32, 36, 54, 174, 186, 207
CciI TCATGA 3 cut(s) 127, 949, 997
CfoI GCGC 1 cut(s) 25
Csp6I GTAC 3 cut(s) 401, 1019, 1094
CviAII CATG 7 cut(s) 31, 128, 290, 859, 937, 950, 998
CviQI GTAC 3 cut(s) 401, 1019, 1094
DdeI CTNAG 2 cut(s) 489, 1315
DpnI GATC 5 cut(s) 66, 240, 306, 944, 1013
DpnII GATC 5 cut(s) 64, 238, 304, 942, 1011
EaeI YGGCCR 2 cut(s) 3, 1247
Eam1104I CTCTTC 2 cut(s) 861, 900
EarI CTCTTC 2 cut(s) 861, 900
Eco130I CCWWGG 3 cut(s) 911, 936, 960
Eco147I AGGCCT 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 60
EcoT14I CCWWGG 3 cut(s) 911, 936, 960
ErhI CCWWGG 3 cut(s) 911, 936, 960
FaeI CATG 7 cut(s) 34, 131, 293, 862, 940, 953, 1001
FalI AAGNNNNNCTT 4 cut(s) 207, 239, 1226, 1258
FatI CATG 7 cut(s) 30, 127, 289, 858, 936, 949, 997
FbaI TGATCA 2 cut(s) 238, 304
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 8 cut(s) 175, 572, 653, 701, 719, 767, 815, 919
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 3 cut(s) 147, 173, 549
GlaI GCGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 21
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 3 cut(s) 5, 154, 1249
HhaI GCGC 1 cut(s) 25
Hin1II CATG 7 cut(s) 34, 131, 293, 862, 940, 953, 1001
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HindIII AAGCTT 2 cut(s) 207, 491
HinfI GANTC 5 cut(s) 143, 293, 524, 871, 1309
HphI GGTGA 5 cut(s) 268, 457, 518, 1081, 1096
Hpy188I TCNGA 1 cut(s) 529
HpyAV CCTTC 6 cut(s) 165, 283, 497, 885, 1171, 1177
HpyCH4III ACNGT 2 cut(s) 106, 731
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 194, 257, 352, 1193
HpyF3I CTNAG 2 cut(s) 489, 1315
Hsp92II CATG 7 cut(s) 34, 131, 293, 862, 940, 953, 1001
HspAI GCGC 1 cut(s) 23
Ksp22I TGATCA 2 cut(s) 238, 304
Kzo9I GATC 5 cut(s) 64, 238, 304, 942, 1011
LguI GCTCTTC 1 cut(s) 900
LmnI GCTCC 6 cut(s) 313, 646, 712, 760, 808, 1201
LpnPI CCDG 1 cut(s) 126
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 9 cut(s) 197, 355, 550, 583, 631, 679, 697, 745, 1164
MaeI CTAG 3 cut(s) 147, 173, 549
MalI GATC 5 cut(s) 66, 240, 306, 944, 1013
MboI GATC 5 cut(s) 64, 238, 304, 942, 1011
MfeI CAATTG 2 cut(s) 47, 179
MflI RGATCY 2 cut(s) 64, 942
MhlI GDGCHC 1 cut(s) 986
MlsI TGGCCA 2 cut(s) 5, 1249
MluCI AATT 9 cut(s) 47, 90, 167, 179, 476, 900, 1087, 1209, 1257
MluNI TGGCCA 2 cut(s) 5, 1249
MlyI GAGTC 3 cut(s) 152, 880, 1303
Mox20I TGGCCA 2 cut(s) 5, 1249
MscI TGGCCA 2 cut(s) 5, 1249
MseI TTAA 3 cut(s) 1043, 1212, 1230
MslI CAYNNNNRTG 2 cut(s) 234, 935
Msp20I TGGCCA 2 cut(s) 5, 1249
MunI CAATTG 2 cut(s) 47, 179
MwoI GCNNNNNNNGC 5 cut(s) 31, 194, 257, 352, 1193
NcoI CCATGG 1 cut(s) 936
NdeII GATC 5 cut(s) 64, 238, 304, 942, 1011
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 7 cut(s) 34, 131, 293, 862, 940, 953, 1001
NlaIV GGNNCC 3 cut(s) 111, 315, 1197
NspI RCATGY 1 cut(s) 34
PaeI GCATGC 1 cut(s) 34
PagI TCATGA 3 cut(s) 127, 949, 997
PceI AGGCCT 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 900
PfeI GAWTC 2 cut(s) 293, 524
PflMI CCANNNNNTGG 1 cut(s) 1259
PkrI GCNGC 1 cut(s) 22
PleI GAGTC 3 cut(s) 151, 879, 1303
PpsI GAGTC 3 cut(s) 151, 879, 1303
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 111, 315, 1197
PsuI RGATCY 2 cut(s) 64, 942
RsaI GTAC 3 cut(s) 402, 1020, 1095
RsaNI GTAC 3 cut(s) 401, 1019, 1094
RseI CAYNNNNRTG 2 cut(s) 234, 935
SapI GCTCTTC 1 cut(s) 900
SaqAI TTAA 3 cut(s) 1043, 1212, 1230
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 5 cut(s) 64, 238, 304, 942, 1011
SchI GAGTC 3 cut(s) 152, 880, 1303
SduI GDGCHC 1 cut(s) 986
SfaNI GCATC 9 cut(s) 197, 355, 550, 583, 631, 679, 697, 745, 1164
SmiMI CAYNNNNRTG 2 cut(s) 234, 935
SmlI CTYRAG 5 cut(s) 213, 350, 1122, 1172, 1343
SmoI CTYRAG 5 cut(s) 213, 350, 1122, 1172, 1343
SphI GCATGC 1 cut(s) 34
Sse9I AATT 9 cut(s) 47, 90, 167, 179, 476, 900, 1087, 1209, 1257
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 3 cut(s) 644, 710, 758
SspI AATATT 1 cut(s) 1266
SspMI CTAG 3 cut(s) 147, 173, 549
StuI AGGCCT 1 cut(s) 154
StyI CCWWGG 3 cut(s) 911, 936, 960
TaaI ACNGT 2 cut(s) 106, 731
TaqI TCGA 6 cut(s) 199, 342, 633, 681, 747, 795
TasI AATT 9 cut(s) 47, 90, 167, 179, 476, 900, 1087, 1209, 1257
TatI WGTACW 1 cut(s) 400
TfiI GAWTC 2 cut(s) 293, 524
Tru1I TTAA 3 cut(s) 1043, 1212, 1230
Tru9I TTAA 3 cut(s) 1043, 1212, 1230
TseI GCWGC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 1259
XapI RAATTY 1 cut(s) 90
XceI RCATGY 1 cut(s) 34
XspI CTAG 3 cut(s) 147, 173, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.