RchiOBHm_Chr5g0041301

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000195
Physical Location & Seq
Reverse (-)
36058709 .. 36059663
955 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31974

Sequence Viewer

Length: 852 bp
ATGGAGCCTAATTCAAGAGAAGAAGTATATTATGAGCATCATGAGCAAGAGTCGCCTATTCAAGATCTAGATGGTGATGTTCATGAACAAGAAAGTGAGCTTGGTTATGAAAGTTTCAATGCAAGTGGGGTGAGTGACTACACTTCGGAGGAATTGATGCAATATTGGAAATCTAAGCTTCCAAATGGAGGGGAGATGCTTGAAGATGATTCCGAAGAGGAAGATGTCTTGTCTAGTGAGGAGGATGCGGAATTTGAAGTTATACACCATAACCCCTTGTTCATTGAGGAGGATGCGGAGCTTGAAGTCATACACCATAATCCCTTATTTGTTGAGGTTGATATTCCCATGGAGGAAGAAAGTCCTTCAATACTTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTTGCCTCCTACATCCAAGGAGATCTATCATGAGCTACCCAAGGTGGAGAGTAGAACATTGAGCACTTATGTTCTTAATGCGAGGATTGGGATCAAGGTACTTTTACCTCCCAATCCATCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATGGAGCACTTGCACTCATCCTTTCCCATCACTCTCAAGAGCTTCTACCACCTATTGTTCCTATGAACATCATTTCTACACCACTTGAGAAGGAGAAGGCAAGGAGATTAATTCATAGAAGAAAAATCGAGAAGAAGGGGAAGATTAAGAAGCTACACTTTTGGCCACCAAATGGAGTATTCTTATGTTGCTCTTGGTCTTGTCTCTATGACAAATCGATGAGTCCCTTAGTGCCAAACAATAGGGTGGTCGCACTTGAGAAATATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.6

Weight (kDa)

4.64

Isoelectric Point (pI)

65.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 749
AciI CCGC 2 cut(s) 248, 296
AclWI GGATC 1 cut(s) 509
AcoI YGGCCR 1 cut(s) 740
AcsI RAATTY 1 cut(s) 251
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 2 cut(s) 188, 749
AgsI TTSAA 8 cut(s) 15, 62, 118, 203, 257, 305, 369, 395
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AluBI AGCT 6 cut(s) 100, 178, 301, 445, 619, 730
AluI AGCT 6 cut(s) 100, 178, 301, 445, 619, 730
Alw21I GWGCWC 2 cut(s) 476, 586
Alw26I GTCTC 1 cut(s) 785
AlwI GGATC 1 cut(s) 509
AoxI GGCC 1 cut(s) 740
ApoI RAATTY 1 cut(s) 251
AseI ATTAAT 1 cut(s) 686
AsuHPI GGTGA 3 cut(s) 86, 142, 571
BalI TGGCCA 1 cut(s) 742
Bbv12I GWGCWC 2 cut(s) 476, 586
BccI CCATC 4 cut(s) 65, 535, 556, 612
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 2 cut(s) 68, 234
BglII AGATCT 2 cut(s) 64, 432
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 5 cut(s) 46, 147, 186, 235, 283
BpuEI CTTGAG 2 cut(s) 597, 683
Bsa29I ATCGAT 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 500
BsaJI CCNNGG 4 cut(s) 348, 401, 426, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 749
Bse8I GATNNNNATC 1 cut(s) 500
BseCI ATCGAT 1 cut(s) 794
BseDI CCNNGG 4 cut(s) 348, 401, 426, 450
BseGI GGATG 4 cut(s) 250, 298, 422, 594
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 2 cut(s) 188, 749
BseRI GAGGAG 2 cut(s) 254, 302
BshFI GGCC 1 cut(s) 742
BshVI ATCGAT 1 cut(s) 794
BsiHKAI GWGCWC 2 cut(s) 476, 586
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 2 cut(s) 188, 749
BsmAI GTCTC 1 cut(s) 785
BsmFI GGGAC 1 cut(s) 786
BsnI GGCC 1 cut(s) 742
Bsp1286I GDGCHC 2 cut(s) 476, 586
Bsp143I GATC 3 cut(s) 64, 432, 501
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 2 cut(s) 248, 296
BspANI GGCC 1 cut(s) 742
BspDI ATCGAT 1 cut(s) 794
BspHI TCATGA 3 cut(s) 40, 82, 439
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 509
BspQI GCTCTTC 1 cut(s) 390
BssECI CCNNGG 4 cut(s) 348, 401, 426, 450
BssMI GATC 3 cut(s) 64, 432, 501
BssT1I CCWWGG 4 cut(s) 348, 401, 426, 450
Bst6I CTCTTC 2 cut(s) 210, 390
BstDEI CTNAG 2 cut(s) 174, 805
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 4 cut(s) 250, 298, 422, 594
BstKTI GATC 3 cut(s) 67, 435, 504
BstMAI GTCTC 1 cut(s) 785
BstMBI GATC 3 cut(s) 64, 432, 501
BstMWI GCNNNNNNNGC 2 cut(s) 43, 52
BstX2I RGATCY 2 cut(s) 64, 432
BstYI RGATCY 2 cut(s) 64, 432
Bsu15I ATCGAT 1 cut(s) 794
BsuRI GGCC 1 cut(s) 742
BsuTUI ATCGAT 1 cut(s) 794
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 4 cut(s) 250, 298, 422, 594
CciI TCATGA 3 cut(s) 40, 82, 439
ClaI ATCGAT 1 cut(s) 794
Csp6I GTAC 1 cut(s) 509
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 4 cut(s) 41, 83, 349, 440
CviJI RGCY 9 cut(s) 7, 100, 178, 301, 400, 445, 619, 730, 742
CviKI_1 RGCY 9 cut(s) 7, 100, 178, 301, 400, 445, 619, 730, 742
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 2 cut(s) 174, 805
DpnI GATC 3 cut(s) 66, 434, 503
DpnII GATC 3 cut(s) 64, 432, 501
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 2 cut(s) 210, 390
EarI CTCTTC 2 cut(s) 210, 390
Eco130I CCWWGG 4 cut(s) 348, 401, 426, 450
EcoT14I CCWWGG 4 cut(s) 348, 401, 426, 450
ErhI CCWWGG 4 cut(s) 348, 401, 426, 450
FaeI CATG 4 cut(s) 44, 86, 352, 443
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FaqI GGGAC 1 cut(s) 786
FatI CATG 4 cut(s) 40, 82, 348, 439
FokI GGATG 4 cut(s) 257, 305, 409, 581
FspBI CTAG 2 cut(s) 68, 234
HaeIII GGCC 1 cut(s) 742
Hin1II CATG 4 cut(s) 44, 86, 352, 443
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 3 cut(s) 50, 209, 799
HphI GGTGA 3 cut(s) 86, 142, 571
Hpy188I TCNGA 2 cut(s) 148, 214
Hpy188III TCNNGA 8 cut(s) 15, 41, 62, 68, 83, 440, 614, 706
HpyAV CCTTC 4 cut(s) 375, 661, 667, 706
HpyCH4V TGCA 3 cut(s) 122, 160, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 52
HpyF3I CTNAG 2 cut(s) 174, 805
Hsp92II CATG 4 cut(s) 44, 86, 352, 443
Kzo9I GATC 3 cut(s) 64, 432, 501
LguI GCTCTTC 1 cut(s) 390
LmnI GCTCC 3 cut(s) 4, 298, 581
LweI GCATC 5 cut(s) 46, 147, 186, 235, 283
MaeI CTAG 2 cut(s) 68, 234
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 66, 434, 503
MboI GATC 3 cut(s) 64, 432, 501
MflI RGATCY 2 cut(s) 64, 432
MhlI GDGCHC 2 cut(s) 476, 586
MlsI TGGCCA 1 cut(s) 742
MluCI AATT 5 cut(s) 10, 152, 251, 390, 687
MluNI TGGCCA 1 cut(s) 742
MlyI GAGTC 2 cut(s) 59, 808
Mox20I TGGCCA 1 cut(s) 742
MscI TGGCCA 1 cut(s) 742
MseI TTAA 4 cut(s) 486, 533, 686, 723
Msp20I TGGCCA 1 cut(s) 742
MwoI GCNNNNNNNGC 2 cut(s) 43, 52
NcoI CCATGG 1 cut(s) 348
NdeII GATC 3 cut(s) 64, 432, 501
NlaIII CATG 4 cut(s) 44, 86, 352, 443
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 134
PagI TCATGA 3 cut(s) 40, 82, 439
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 209
PflMI CCANNNNNTGG 1 cut(s) 749
PleI GAGTC 2 cut(s) 58, 807
PpsI GAGTC 2 cut(s) 58, 807
PshBI ATTAAT 1 cut(s) 686
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 64, 432
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 486, 533, 686, 723
Sau3AI GATC 3 cut(s) 64, 432, 501
SchI GAGTC 2 cut(s) 59, 808
SduI GDGCHC 2 cut(s) 476, 586
SfaNI GCATC 5 cut(s) 46, 147, 186, 235, 283
SmlI CTYRAG 3 cut(s) 612, 662, 833
SmoI CTYRAG 3 cut(s) 612, 662, 833
Sse9I AATT 5 cut(s) 10, 152, 251, 390, 687
SsiI CCGC 2 cut(s) 248, 296
SspI AATATT 1 cut(s) 164
SspMI CTAG 2 cut(s) 68, 234
StyI CCWWGG 4 cut(s) 348, 401, 426, 450
TaqI TCGA 2 cut(s) 705, 794
TasI AATT 5 cut(s) 10, 152, 251, 390, 687
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 4 cut(s) 486, 533, 686, 723
Tru9I TTAA 4 cut(s) 486, 533, 686, 723
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 7 cut(s) 71, 99, 123, 271, 399, 656, 680
Van91I CCANNNNNTGG 1 cut(s) 749
VspI ATTAAT 1 cut(s) 686
XapI RAATTY 1 cut(s) 251
XbaI TCTAGA 1 cut(s) 67
XspI CTAG 2 cut(s) 68, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.