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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1124, 1331 |
| AclWI | GGATC | 2 cut(s) | 12, 1024 |
| AcoI | YGGCCR | 1 cut(s) | 1322 |
| AcsI | RAATTY | 3 cut(s) | 82, 284, 848 |
| AcuI | CTGAAG | 1 cut(s) | 396 |
| AcvI | CACGTG | 1 cut(s) | 722 |
| AfaI | GTAC | 3 cut(s) | 209, 684, 1413 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1124, 1331 |
| AflII | CTTAAG | 1 cut(s) | 527 |
| AgsI | TTSAA | 9 cut(s) | 425, 606, 659, 715, 800, 854, 966, 992, 1202 |
| Alw21I | GWGCWC | 2 cut(s) | 167, 1174 |
| Alw26I | GTCTC | 3 cut(s) | 224, 356, 1367 |
| AlwI | GGATC | 2 cut(s) | 12, 1024 |
| AoxI | GGCC | 1 cut(s) | 1322 |
| ApoI | RAATTY | 3 cut(s) | 82, 284, 848 |
| AspS9I | GGNCC | 1 cut(s) | 754 |
| AsuC2I | CCSGG | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 3 cut(s) | 739, 1159, 1174 |
| AsuNHI | GCTAGC | 1 cut(s) | 433 |
| AvaII | GGWCC | 1 cut(s) | 754 |
| BaeGI | GKGCMC | 1 cut(s) | 185 |
| BalI | TGGCCA | 1 cut(s) | 1324 |
| BbrPI | CACGTG | 1 cut(s) | 722 |
| BbsI | GAAGAC | 3 cut(s) | 33, 99, 408 |
| Bbv12I | GWGCWC | 2 cut(s) | 167, 1174 |
| BccI | CCATC | 5 cut(s) | 15, 208, 1041, 1144, 1200 |
| BciVI | GTATCC | 3 cut(s) | 835, 883, 1434 |
| BcnI | CCSGG | 1 cut(s) | 185 |
| BcoDI | GTCTC | 3 cut(s) | 224, 356, 1367 |
| BfaI | CTAG | 7 cut(s) | 276, 302, 408, 434, 534, 831, 1278 |
| BfrI | CTTAAG | 1 cut(s) | 527 |
| BfuI | GTATCC | 3 cut(s) | 835, 883, 1434 |
| Bme1390I | CCNGG | 1 cut(s) | 185 |
| Bme18I | GGWCC | 1 cut(s) | 754 |
| BmgT120I | GGNCC | 1 cut(s) | 754 |
| BmiI | GGNNCC | 3 cut(s) | 372, 597, 755 |
| BmrFI | CCNGG | 1 cut(s) | 185 |
| BmsI | GCATC | 4 cut(s) | 492, 637, 783, 1242 |
| BmtI | GCTAGC | 1 cut(s) | 437 |
| BpiI | GAAGAC | 3 cut(s) | 33, 99, 408 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 403, 435 |
| Bpu10I | CCTNAGC | 2 cut(s) | 998, 1387 |
| BpuEI | CTTGAG | 5 cut(s) | 327, 480, 653, 920, 1271 |
| BpuMI | CCSGG | 1 cut(s) | 185 |
| BsaAI | YACGTR | 1 cut(s) | 722 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1088 |
| BsaI | GGTCTC | 1 cut(s) | 356 |
| BsaJI | CCNNGG | 5 cut(s) | 32, 143, 366, 945, 1023 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 994, 1024 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1124, 1331 |
| Bse3DI | GCAATG | 1 cut(s) | 121 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1088 |
| BseDI | CCNNGG | 5 cut(s) | 32, 143, 366, 945, 1023 |
| BseGI | GGATG | 2 cut(s) | 26, 1019 |
| BseJI | GATNNNNATC | 1 cut(s) | 1088 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1124, 1331 |
| BseMI | GCAATG | 1 cut(s) | 121 |
| BseRI | GAGGAG | 4 cut(s) | 803, 851, 899, 1002 |
| BseSI | GKGCMC | 1 cut(s) | 185 |
| Bsh1285I | CGRYCG | 1 cut(s) | 96 |
| BshFI | GGCC | 1 cut(s) | 1324 |
| BsiEI | CGRYCG | 1 cut(s) | 96 |
| BsiHKAI | GWGCWC | 2 cut(s) | 167, 1174 |
| BsiSI | CCGG | 1 cut(s) | 185 |
| BslFI | GGGAC | 1 cut(s) | 1368 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1124, 1331 |
| BsmAI | GTCTC | 3 cut(s) | 224, 356, 1367 |
| BsmFI | GGGAC | 1 cut(s) | 1368 |
| BsmI | GAATGC | 1 cut(s) | 148 |
| BsnI | GGCC | 1 cut(s) | 1324 |
| Bso31I | GGTCTC | 1 cut(s) | 356 |
| Bsp1286I | GDGCHC | 3 cut(s) | 167, 185, 1174 |
| Bsp1407I | TGTACA | 1 cut(s) | 682 |
| Bsp143I | GATC | 5 cut(s) | 4, 93, 903, 1029, 1089 |
| Bsp19I | CCATGG | 2 cut(s) | 366, 945 |
| BspANI | GGCC | 1 cut(s) | 1324 |
| BspHI | TCATGA | 2 cut(s) | 388, 1036 |
| BspLI | GGNNCC | 3 cut(s) | 372, 597, 755 |
| BspOI | GCTAGC | 1 cut(s) | 437 |
| BspPI | GGATC | 2 cut(s) | 12, 1024 |
| BspQI | GCTCTTC | 1 cut(s) | 987 |
| BspTI | CTTAAG | 1 cut(s) | 527 |
| BspTNI | GGTCTC | 1 cut(s) | 356 |
| BsrDI | GCAATG | 1 cut(s) | 121 |
| BsrGI | TGTACA | 1 cut(s) | 682 |
| BssECI | CCNNGG | 5 cut(s) | 32, 143, 366, 945, 1023 |
| BssMI | GATC | 5 cut(s) | 4, 93, 903, 1029, 1089 |
| BssT1I | CCWWGG | 5 cut(s) | 32, 143, 366, 945, 1023 |
| Bst6I | CTCTTC | 4 cut(s) | 948, 987, 1289, 1373 |
| BstAFI | CTTAAG | 1 cut(s) | 527 |
| BstAUI | TGTACA | 1 cut(s) | 682 |
| BstBAI | YACGTR | 1 cut(s) | 722 |
| BstC8I | GCNNGC | 5 cut(s) | 315, 396, 435, 447, 489 |
| BstDEI | CTNAG | 3 cut(s) | 771, 998, 1387 |
| BstDSI | CCRYGG | 2 cut(s) | 366, 945 |
| BstF5I | GGATG | 2 cut(s) | 26, 1019 |
| BstKTI | GATC | 5 cut(s) | 7, 96, 906, 1032, 1092 |
| BstMAI | GTCTC | 3 cut(s) | 224, 356, 1367 |
| BstMBI | GATC | 5 cut(s) | 4, 93, 903, 1029, 1089 |
| BstMCI | CGRYCG | 1 cut(s) | 96 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 323, 539, 634, 1271 |
| BstNSI | RCATGY | 1 cut(s) | 223 |
| BstSCI | CCNGG | 1 cut(s) | 183 |
| BstSLI | GKGCMC | 1 cut(s) | 185 |
| BstV2I | GAAGAC | 3 cut(s) | 33, 99, 408 |
| BstX2I | RGATCY | 1 cut(s) | 1029 |
| BstYI | RGATCY | 1 cut(s) | 1029 |
| BsuI | GTATCC | 3 cut(s) | 835, 883, 1434 |
| BsuRI | GGCC | 1 cut(s) | 1324 |
| BtgI | CCRYGG | 2 cut(s) | 366, 945 |
| BtsCI | GGATG | 2 cut(s) | 26, 1019 |
| Cac8I | GCNNGC | 5 cut(s) | 315, 396, 435, 447, 489 |
| CciI | TCATGA | 2 cut(s) | 388, 1036 |
| Cfr13I | GGNCC | 1 cut(s) | 754 |
| Csp6I | GTAC | 3 cut(s) | 208, 683, 1412 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 703, 738 |
| CviAII | CATG | 8 cut(s) | 89, 220, 367, 389, 572, 907, 946, 1037 |
| CviQI | GTAC | 3 cut(s) | 208, 683, 1412 |
| DdeI | CTNAG | 3 cut(s) | 771, 998, 1387 |
| DpnI | GATC | 5 cut(s) | 6, 95, 905, 1031, 1091 |
| DpnII | GATC | 5 cut(s) | 4, 93, 903, 1029, 1089 |
| EaeI | YGGCCR | 1 cut(s) | 1322 |
| Eam1104I | CTCTTC | 4 cut(s) | 948, 987, 1289, 1373 |
| EarI | CTCTTC | 4 cut(s) | 948, 987, 1289, 1373 |
| Eco130I | CCWWGG | 5 cut(s) | 32, 143, 366, 945, 1023 |
| Eco31I | GGTCTC | 1 cut(s) | 356 |
| Eco47I | GGWCC | 1 cut(s) | 754 |
| Eco57I | CTGAAG | 1 cut(s) | 396 |
| Eco72I | CACGTG | 1 cut(s) | 722 |
| EcoRI | GAATTC | 1 cut(s) | 82 |
| EcoT14I | CCWWGG | 5 cut(s) | 32, 143, 366, 945, 1023 |
| EcoT22I | ATGCAT | 1 cut(s) | 250 |
| ErhI | CCWWGG | 5 cut(s) | 32, 143, 366, 945, 1023 |
| FaeI | CATG | 8 cut(s) | 92, 223, 370, 392, 575, 910, 949, 1040 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 489, 521, 1301, 1333, 1370, 1402 |
| FaqI | GGGAC | 1 cut(s) | 1368 |
| FatI | CATG | 8 cut(s) | 88, 219, 366, 388, 571, 906, 945, 1036 |
| FauNDI | CATATG | 1 cut(s) | 400 |
| FokI | GGATG | 2 cut(s) | 33, 1006 |
| FspBI | CTAG | 7 cut(s) | 276, 302, 408, 434, 534, 831, 1278 |
| HaeIII | GGCC | 1 cut(s) | 1324 |
| HapII | CCGG | 1 cut(s) | 185 |
| Hin1II | CATG | 8 cut(s) | 92, 223, 370, 392, 575, 910, 949, 1040 |
| HincII | GTYRAC | 1 cut(s) | 292 |
| HindII | GTYRAC | 1 cut(s) | 292 |
| HindIII | AAGCTT | 4 cut(s) | 264, 447, 489, 773 |
| HinfI | GANTC | 6 cut(s) | 404, 575, 641, 806, 958, 1381 |
| HpaII | CCGG | 1 cut(s) | 185 |
| HphI | GGTGA | 3 cut(s) | 739, 1159, 1174 |
| Hpy166II | GTNNAC | 1 cut(s) | 292 |
| Hpy188I | TCNGA | 2 cut(s) | 745, 811 |
| Hpy188III | TCNNGA | 9 cut(s) | 227, 374, 389, 422, 497, 606, 632, 1037, 1202 |
| Hpy8I | GTNNAC | 1 cut(s) | 292 |
| HpyAV | CCTTC | 3 cut(s) | 565, 972, 1249 |
| HpyCH4IV | ACGT | 1 cut(s) | 721 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 323, 539, 634, 1271 |
| HpyF3I | CTNAG | 3 cut(s) | 771, 998, 1387 |
| HpySE526I | ACGT | 1 cut(s) | 721 |
| Hsp92II | CATG | 8 cut(s) | 92, 223, 370, 392, 575, 910, 949, 1040 |
| Kzo9I | GATC | 5 cut(s) | 4, 93, 903, 1029, 1089 |
| LguI | GCTCTTC | 1 cut(s) | 987 |
| LmnI | GCTCC | 4 cut(s) | 12, 595, 1169, 1279 |
| LpnPI | CCDG | 2 cut(s) | 198, 387 |
| LweI | GCATC | 4 cut(s) | 492, 637, 783, 1242 |
| MaeI | CTAG | 7 cut(s) | 276, 302, 408, 434, 534, 831, 1278 |
| MaeII | ACGT | 1 cut(s) | 721 |
| MaeIII | GTNAC | 2 cut(s) | 731, 974 |
| MalI | GATC | 5 cut(s) | 6, 95, 905, 1031, 1091 |
| MboI | GATC | 5 cut(s) | 4, 93, 903, 1029, 1089 |
| MfeI | CAATTG | 2 cut(s) | 308, 440 |
| MflI | RGATCY | 1 cut(s) | 1029 |
| MhlI | GDGCHC | 3 cut(s) | 167, 185, 1174 |
| MlsI | TGGCCA | 1 cut(s) | 1324 |
| MluNI | TGGCCA | 1 cut(s) | 1324 |
| MlyI | GAGTC | 4 cut(s) | 413, 650, 967, 1390 |
| Mox20I | TGGCCA | 1 cut(s) | 1324 |
| Mph1103I | ATGCAT | 1 cut(s) | 250 |
| MscI | TGGCCA | 1 cut(s) | 1324 |
| MseI | TTAA | 4 cut(s) | 528, 1074, 1305, 1432 |
| MslI | CAYNNNNRTG | 1 cut(s) | 516 |
| Msp20I | TGGCCA | 1 cut(s) | 1324 |
| MspCI | CTTAAG | 1 cut(s) | 527 |
| MspI | CCGG | 1 cut(s) | 185 |
| MspR9I | CCNGG | 1 cut(s) | 185 |
| MunI | CAATTG | 2 cut(s) | 308, 440 |
| Mva1269I | GAATGC | 1 cut(s) | 148 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 323, 539, 634, 1271 |
| NciI | CCSGG | 1 cut(s) | 185 |
| NcoI | CCATGG | 2 cut(s) | 366, 945 |
| NdeI | CATATG | 1 cut(s) | 400 |
| NdeII | GATC | 5 cut(s) | 4, 93, 903, 1029, 1089 |
| NheI | GCTAGC | 1 cut(s) | 433 |
| NlaIII | CATG | 8 cut(s) | 92, 223, 370, 392, 575, 910, 949, 1040 |
| NlaIV | GGNNCC | 3 cut(s) | 372, 597, 755 |
| NmuCI | GTSAC | 2 cut(s) | 731, 974 |
| NsiI | ATGCAT | 1 cut(s) | 250 |
| NspI | RCATGY | 1 cut(s) | 223 |
| PagI | TCATGA | 2 cut(s) | 388, 1036 |
| PciSI | GCTCTTC | 1 cut(s) | 987 |
| PctI | GAATGC | 1 cut(s) | 148 |
| PfeI | GAWTC | 2 cut(s) | 575, 806 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1124, 1331 |
| Ple19I | CGATCG | 1 cut(s) | 96 |
| PleI | GAGTC | 4 cut(s) | 412, 649, 966, 1389 |
| PmaCI | CACGTG | 1 cut(s) | 722 |
| PmlI | CACGTG | 1 cut(s) | 722 |
| PpsI | GAGTC | 4 cut(s) | 412, 649, 966, 1389 |
| Ppu21I | YACGTR | 1 cut(s) | 722 |
| PspCI | CACGTG | 1 cut(s) | 722 |
| PspN4I | GGNNCC | 3 cut(s) | 372, 597, 755 |
| PspPI | GGNCC | 1 cut(s) | 754 |
| PsuI | RGATCY | 1 cut(s) | 1029 |
| PvuI | CGATCG | 1 cut(s) | 96 |
| RsaI | GTAC | 3 cut(s) | 209, 684, 1413 |
| RsaNI | GTAC | 3 cut(s) | 208, 683, 1412 |
| RseI | CAYNNNNRTG | 1 cut(s) | 516 |
| SapI | GCTCTTC | 1 cut(s) | 987 |
| SaqAI | TTAA | 4 cut(s) | 528, 1074, 1305, 1432 |
| Sau3AI | GATC | 5 cut(s) | 4, 93, 903, 1029, 1089 |
| Sau96I | GGNCC | 1 cut(s) | 754 |
| SchI | GAGTC | 4 cut(s) | 413, 650, 967, 1390 |
| ScrFI | CCNGG | 1 cut(s) | 185 |
| SduI | GDGCHC | 3 cut(s) | 167, 185, 1174 |
| SfaNI | GCATC | 4 cut(s) | 492, 637, 783, 1242 |
| SinI | GGWCC | 1 cut(s) | 754 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 516 |
| SmlI | CTYRAG | 7 cut(s) | 342, 495, 527, 632, 899, 1250, 1415 |
| SmoI | CTYRAG | 7 cut(s) | 342, 495, 527, 632, 899, 1250, 1415 |
| SspI | AATATT | 1 cut(s) | 1065 |
| SspMI | CTAG | 7 cut(s) | 276, 302, 408, 434, 534, 831, 1278 |
| StyD4I | CCNGG | 1 cut(s) | 183 |
| StyI | CCWWGG | 5 cut(s) | 32, 143, 366, 945, 1023 |
| TaiI | ACGT | 1 cut(s) | 724 |
| TaqI | TCGA | 4 cut(s) | 481, 882, 936, 1376 |
| TatI | WGTACW | 2 cut(s) | 207, 682 |
| TfiI | GAWTC | 2 cut(s) | 575, 806 |
| Tru1I | TTAA | 4 cut(s) | 528, 1074, 1305, 1432 |
| Tru9I | TTAA | 4 cut(s) | 528, 1074, 1305, 1432 |
| TseFI | GTSAC | 2 cut(s) | 731, 974 |
| Tsp45I | GTSAC | 2 cut(s) | 731, 974 |
| TspDTI | ATGAA | 7 cut(s) | 132, 141, 588, 720, 868, 916, 996 |
| TspGWI | ACGGA | 2 cut(s) | 309, 860 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1124, 1331 |
| Vha464I | CTTAAG | 1 cut(s) | 527 |
| VpaK11BI | GGWCC | 1 cut(s) | 754 |
| XapI | RAATTY | 3 cut(s) | 82, 284, 848 |
| XceI | RCATGY | 1 cut(s) | 223 |
| XspI | CTAG | 7 cut(s) | 276, 302, 408, 434, 534, 831, 1278 |
| Zsp2I | ATGCAT | 1 cut(s) | 250 |