Rmu_sc0003859.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003859.1
OG0000195
Physical Location & Seq
Forward (+)
86225 .. 86674
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003859.1_g000025.1.cds

Sequence Viewer

Length: 450 bp
atggatgggaagacctatgggggatatgagcaagaaagtttctatggtggaggtcatcaagagtggaattctcatgcggtgggttctatgtcttcttgcaatgaaacttgtgccttgtgtaattctccatggcattcaccttttgagtgctcggattttatgcaagagtgtgagtacaagatgagcatgtatcaagagacatttgtacccgatgcatattcacaagatgaagcttatgagcctgggaaggaattcgttaaagcactactagctcaattgcaagcctcccgagatcttttacatgcctctcaagctagaatttcgcaagagaccatggttcccgaagcatatcctcatgagcaagcatatgagtctaggaagccttctcttgaagaattgctagctcaattgcaagcttcccaagcccaattacaagcctcacaagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.77

Weight (kDa)

4.52

Isoelectric Point (pI)

73.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcsI RAATTY 3 cut(s) 67, 251, 318
AfaI GTAC 2 cut(s) 176, 207
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 6 cut(s) 233, 272, 314, 404, 416, 446
AluI AGCT 6 cut(s) 233, 272, 314, 404, 416, 446
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 191, 323
Ama87I CYCGRG 1 cut(s) 288
ApoI RAATTY 3 cut(s) 67, 251, 318
Asp700I GAANNNNTTC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 129
AsuNHI GCTAGC 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 189, 222
BbsI GAAGAC 2 cut(s) 17, 84
Bbv12I GWGCWC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 243
BcoDI GTCTC 2 cut(s) 191, 323
BfaI CTAG 4 cut(s) 269, 315, 375, 401
BglII AGATCT 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 202
BmtI GCTAGC 1 cut(s) 404
BpiI GAAGAC 2 cut(s) 17, 84
BpuEI CTTGAG 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 3 cut(s) 128, 242, 333
Bse3DI GCAATG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 128, 242, 333
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 288
BsmAI GTCTC 2 cut(s) 191, 323
BsmI GAATGC 1 cut(s) 133
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 292
Bsp19I CCATGG 2 cut(s) 128, 333
BspACI CCGC 1 cut(s) 77
BspHI TCATGA 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 339
BspOI GCTAGC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 106
BssECI CCNNGG 3 cut(s) 128, 242, 333
BssMI GATC 1 cut(s) 292
BssT1I CCWWGG 2 cut(s) 128, 333
Bst2UI CCWGG 1 cut(s) 243
BstC8I GCNNGC 4 cut(s) 282, 363, 402, 414
BstDSI CCRYGG 2 cut(s) 128, 333
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 191, 323
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 4 cut(s) 269, 311, 422, 443
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 2 cut(s) 190, 305
BstSCI CCNGG 1 cut(s) 241
BstV2I GAAGAC 2 cut(s) 17, 84
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtgI CCRYGG 2 cut(s) 128, 333
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 4 cut(s) 282, 363, 402, 414
CciI TCATGA 1 cut(s) 355
Csp6I GTAC 2 cut(s) 175, 206
CviAII CATG 6 cut(s) 74, 129, 187, 302, 334, 356
CviQI GTAC 2 cut(s) 175, 206
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 128, 333
Eco31I GGTCTC 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 288
EcoRI GAATTC 2 cut(s) 67, 251
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 128, 333
EcoT22I ATGCAT 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 128, 333
FaeI CATG 6 cut(s) 77, 132, 190, 305, 337, 359
FatI CATG 6 cut(s) 73, 128, 186, 301, 333, 355
FauNDI CATATG 1 cut(s) 367
FokI GGATG 1 cut(s) 17
FspBI CTAG 4 cut(s) 269, 315, 375, 401
Hin1II CATG 6 cut(s) 77, 132, 190, 305, 337, 359
HindIII AAGCTT 3 cut(s) 231, 414, 444
HinfI GANTC 1 cut(s) 371
HphI GGTGA 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 6 cut(s) 59, 194, 288, 341, 356, 389
HpyAV CCTTC 2 cut(s) 241, 393
HpyCH4V TGCA 5 cut(s) 99, 163, 215, 280, 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 311, 422, 443
Hsp92II CATG 6 cut(s) 77, 132, 190, 305, 337, 359
Kzo9I GATC 1 cut(s) 292
LpnPI CCDG 2 cut(s) 228, 255
LweI GCATC 1 cut(s) 202
MaeI CTAG 4 cut(s) 269, 315, 375, 401
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 3 cut(s) 22, 84, 404
MfeI CAATTG 2 cut(s) 275, 407
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 152
MluCI AATT 8 cut(s) 67, 121, 251, 275, 318, 395, 407, 428
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 5 cut(s) 44, 295, 316, 363, 448
Mph1103I ATGCAT 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 2 cut(s) 258, 448
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 2 cut(s) 275, 407
Mva1269I GAATGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 4 cut(s) 269, 311, 422, 443
NcoI CCATGG 2 cut(s) 128, 333
NdeI CATATG 1 cut(s) 367
NdeII GATC 1 cut(s) 292
NheI GCTAGC 1 cut(s) 400
NlaIII CATG 6 cut(s) 77, 132, 190, 305, 337, 359
NlaIV GGNNCC 1 cut(s) 339
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 2 cut(s) 190, 305
PagI TCATGA 1 cut(s) 355
PctI GAATGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 251
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 339
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 2 cut(s) 176, 207
RsaNI GTAC 2 cut(s) 175, 206
SaqAI TTAA 2 cut(s) 258, 448
Sau3AI GATC 1 cut(s) 292
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 1 cut(s) 152
SetI ASST 9 cut(s) 17, 55, 142, 235, 274, 316, 406, 418, 448
SfaNI GCATC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 8 cut(s) 67, 121, 251, 275, 318, 395, 407, 428
SsiI CCGC 1 cut(s) 77
SspMI CTAG 4 cut(s) 269, 315, 375, 401
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 2 cut(s) 128, 333
TasI AATT 8 cut(s) 67, 121, 251, 275, 318, 395, 407, 428
TatI WGTACW 1 cut(s) 174
Tru1I TTAA 2 cut(s) 258, 448
Tru9I TTAA 2 cut(s) 258, 448
TspDTI ATGAA 2 cut(s) 117, 243
XapI RAATTY 3 cut(s) 67, 251, 318
XceI RCATGY 2 cut(s) 190, 305
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 4 cut(s) 269, 315, 375, 401
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.