Rroxscaffold_7G00173340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000195
Physical Location & Seq
Reverse (-)
13383721 .. 13389123
5403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173340.1

Sequence Viewer

Length: 465 bp
ATGGGGAAGCAATCGGTGAGGATGAAGGCGGTGGTTTACGAAGAAAAGGGCAGCACGGGATGGGATGACTCGAGGGGAAAAGAGCAAGAATGTTTATATGGTGGAGGTCATCAAGAGTGGAATTCTCATGCGGTGGGGACTATGTTCTCTTGCAATGGAACCTGTGCTTTGTGTAATTCTCCGTGGCATTCACCTTTTGAGTACTCTTTGAGATTTGAGTGGCCAGATTTTATGCAAGAGTGTGAGTACAAGATGGACATGTATCAAGAGACATTTGTACCCGATGCATATTCACAAGAAGCTTATGAGCCTAGGAAGGACTTTTTTAAAGGACTACTAGCTCAATTGCAAGCCTCCCGAGATCTTTTACATGCCTCTCAAGCTAGAATTTCACAAGAGACCATGGTACCAATAGTATGGTCAACTATGCTTCCACACAAAAAAAATGCATCGAATAGAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.74

Weight (kDa)

5.72

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 406
AccB1I GGYRCC 1 cut(s) 406
AciI CCGC 2 cut(s) 29, 131
AcoI YGGCCR 1 cut(s) 221
AcsI RAATTY 2 cut(s) 121, 387
AfaI GTAC 4 cut(s) 203, 248, 279, 408
AflIII ACRYGT 1 cut(s) 258
AluBI AGCT 3 cut(s) 302, 341, 383
AluI AGCT 3 cut(s) 302, 341, 383
Alw26I GTCTC 2 cut(s) 263, 392
Ama87I CYCGRG 2 cut(s) 70, 357
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 2 cut(s) 121, 387
Asp718I GGTACC 1 cut(s) 406
AspA2I CCTAGG 1 cut(s) 311
AsuHPI GGTGA 2 cut(s) 28, 183
AvaI CYCGRG 2 cut(s) 70, 357
AvrII CCTAGG 1 cut(s) 311
BaeI ACNNNNGTAYC 4 cut(s) 261, 294, 390, 423
BalI TGGCCA 1 cut(s) 223
BanI GGYRCC 1 cut(s) 406
BbvI GCAGC 1 cut(s) 63
BccI CCATC 2 cut(s) 54, 247
BcoDI GTCTC 2 cut(s) 263, 392
BfaI CTAG 3 cut(s) 312, 338, 384
BglII AGATCT 1 cut(s) 361
BisI GCNGC 1 cut(s) 52
BlnI CCTAGG 1 cut(s) 311
BlsI GCNGC 1 cut(s) 53
BmcAI AGTACT 1 cut(s) 203
BmeT110I CYCGRG 2 cut(s) 70, 357
BmiI GGNNCC 2 cut(s) 160, 408
BmsI GCATC 2 cut(s) 274, 458
BpuEI CTTGAG 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 182, 311, 402
Bse3DI GCAATG 1 cut(s) 160
BseDI CCNNGG 3 cut(s) 182, 311, 402
BseGI GGATG 3 cut(s) 27, 65, 70
BseMI GCAATG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 406
BsiHKCI CYCGRG 2 cut(s) 70, 357
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 2 cut(s) 263, 392
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 223
Bso31I GGTCTC 1 cut(s) 392
BsoBI CYCGRG 2 cut(s) 70, 357
Bsp143I GATC 1 cut(s) 361
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 2 cut(s) 29, 131
BspANI GGCC 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 160, 408
BspT107I GGYRCC 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 182, 311, 402
BssMI GATC 1 cut(s) 361
BssT1I CCWWGG 2 cut(s) 311, 402
BstC8I GCNNGC 1 cut(s) 351
BstDSI CCRYGG 2 cut(s) 182, 402
BstF5I GGATG 3 cut(s) 27, 65, 70
BstKTI GATC 1 cut(s) 364
BstMAI GTCTC 2 cut(s) 263, 392
BstMBI GATC 1 cut(s) 361
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNSI RCATGY 2 cut(s) 262, 374
BstV1I GCAGC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 1 cut(s) 417
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 1 cut(s) 223
BtgI CCRYGG 2 cut(s) 182, 402
BtsCI GGATG 3 cut(s) 27, 65, 70
Cac8I GCNNGC 1 cut(s) 351
Csp6I GTAC 4 cut(s) 202, 247, 278, 407
CviAII CATG 4 cut(s) 128, 259, 371, 403
CviJI RGCY 6 cut(s) 223, 302, 310, 341, 353, 383
CviKI_1 RGCY 6 cut(s) 223, 302, 310, 341, 353, 383
CviQI GTAC 4 cut(s) 202, 247, 278, 407
DpnI GATC 1 cut(s) 363
DpnII GATC 1 cut(s) 361
DraI TTTAAA 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 221
Eco130I CCWWGG 2 cut(s) 311, 402
Eco31I GGTCTC 1 cut(s) 392
Eco88I CYCGRG 2 cut(s) 70, 357
EcoRI GAATTC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 311, 402
EcoT22I ATGCAT 2 cut(s) 289, 451
ErhI CCWWGG 2 cut(s) 311, 402
FaeI CATG 4 cut(s) 131, 262, 374, 406
FaqI GGGAC 1 cut(s) 151
FatI CATG 4 cut(s) 127, 258, 370, 402
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 3 cut(s) 34, 72, 77
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 3 cut(s) 312, 338, 384
GluI GCNGC 1 cut(s) 52
HaeIII GGCC 1 cut(s) 223
Hin1II CATG 4 cut(s) 131, 262, 374, 406
HincII GTYRAC 1 cut(s) 423
HindII GTYRAC 1 cut(s) 423
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 1 cut(s) 68
HphI GGTGA 2 cut(s) 28, 183
Hpy166II GTNNAC 2 cut(s) 37, 423
Hpy188III TCNNGA 3 cut(s) 113, 266, 357
Hpy8I GTNNAC 2 cut(s) 37, 423
HpyAV CCTTC 2 cut(s) 19, 310
HpyCH4V TGCA 5 cut(s) 153, 235, 287, 349, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
Hsp92II CATG 4 cut(s) 131, 262, 374, 406
KpnI GGTACC 1 cut(s) 410
Kzo9I GATC 1 cut(s) 361
LpnPI CCDG 2 cut(s) 175, 237
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 2 cut(s) 274, 458
MaeI CTAG 3 cut(s) 312, 338, 384
MalI GATC 1 cut(s) 363
MboI GATC 1 cut(s) 361
MboII GAAGA 1 cut(s) 53
MfeI CAATTG 1 cut(s) 344
MflI RGATCY 1 cut(s) 361
MlsI TGGCCA 1 cut(s) 223
MluCI AATT 4 cut(s) 121, 175, 344, 387
MluNI TGGCCA 1 cut(s) 223
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 6 cut(s) 12, 66, 98, 364, 385, 452
Mox20I TGGCCA 1 cut(s) 223
Mph1103I ATGCAT 2 cut(s) 289, 451
MscI TGGCCA 1 cut(s) 223
MseI TTAA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 223
MunI CAATTG 1 cut(s) 344
Mva1269I GAATGC 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 380
NcoI CCATGG 1 cut(s) 402
NdeII GATC 1 cut(s) 361
NlaIII CATG 4 cut(s) 131, 262, 374, 406
NlaIV GGNNCC 2 cut(s) 160, 408
NsiI ATGCAT 2 cut(s) 289, 451
NspI RCATGY 2 cut(s) 262, 374
PaeR7I CTCGAG 1 cut(s) 70
PciI ACATGT 1 cut(s) 258
PctI GAATGC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PscI ACATGT 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 160, 408
PspXI VCTCGAGB 1 cut(s) 70
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 4 cut(s) 203, 248, 279, 408
RsaNI GTAC 4 cut(s) 202, 247, 278, 407
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 361
ScaI AGTACT 1 cut(s) 203
SchI GAGTC 1 cut(s) 62
SetI ASST 6 cut(s) 109, 164, 196, 304, 343, 385
SfaNI GCATC 2 cut(s) 274, 458
Sfr274I CTCGAG 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 70
SmlI CTYRAG 2 cut(s) 70, 378
SmoI CTYRAG 2 cut(s) 70, 378
Sse9I AATT 4 cut(s) 121, 175, 344, 387
SsiI CCGC 2 cut(s) 29, 131
SspMI CTAG 3 cut(s) 312, 338, 384
StyI CCWWGG 2 cut(s) 311, 402
TaqI TCGA 2 cut(s) 71, 452
TasI AATT 4 cut(s) 121, 175, 344, 387
TatI WGTACW 2 cut(s) 201, 246
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 171
XapI RAATTY 2 cut(s) 121, 387
XceI RCATGY 2 cut(s) 262, 374
XhoI CTCGAG 1 cut(s) 70
XmaJI CCTAGG 1 cut(s) 311
XspI CTAG 3 cut(s) 312, 338, 384
ZrmI AGTACT 1 cut(s) 203
Zsp2I ATGCAT 2 cut(s) 289, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.