Rroxscaffold_2G00095470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000195
Physical Location & Seq
Forward (+)
16824905 .. 16829236
4332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095470.1

Sequence Viewer

Length: 1353 bp
ATGTCTGAATTTAAACGGAAGGAAGCGCCCTACAATGAGAGAGGTCACATCGAGCTAGAAGGGATTCAAATGACAGAAAAGACTTCTAATTGCAAACAAAATTATGAAGAGGTTGAATTTGTCGAACTGAATCAGTCAAGCCATGGGATATTGCTTCGAGTTCAACGGGAACAGGATCAACTTTGGATGTTGGTCGGGTTTCATTATTCCATGGAATCCCACTATTACCTTTCAAGTCAAGTTATGGATCGATGGAATTATGGATGGGATGACCCAATGGGATATGAGCAACCTCCTCAAGATCGAGCTTATGCATCTTCAAAGCCATCCATTGAAGAATTGTTTGCTCAATTCAAAGCTATAAGTGAGAGTGTAGATCCAATCACGGAGCAATTCAAGGCTAGCCTACTTCAAGAGCAACCTCCCACCACTTTATATTTGCAAGAGCCTTTCTTTGATCAAGTGGAGCTTATTTCAAGAGAAGAAGTACATATCAAGCATCTTGAGCAAGAGTCGTTTATGCAAATTGATGATTATAGTGATGTTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTCCAATGCAAGTGGGGTGAAAGACTACACTTCGGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCCTAATGGAGGGGAGATATTTGAAGATGATTCCGATGAAGATGATGTCTTTTCTAGTGAGGAGGATGCGGAGTTTGAAGTGATGCACCACAATTGCTTATTCATTGAGGCCATATTTGAAGATGATTCCGATGAAGAGGATGTCTTGTCTAGTGAGGAGGAGGCGGAATTTGAAGTCCTACACCATAATCCCTTATTCATTGAGGAGGATGCGGAGCTTCAAGTCATATATCGTAATCCTTTATTCATTGAGGCCGATGTTCCCAAGGAGGAAGAGAGTCATGCAATGATCCATCATGAGCTTCCCAAGGTGGAGAGTAGGACATTGAGCACTTACATTCTTAATGAGAGGATTGGGATCAAGGTACTTTTACCTCCCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATGAAGCACTTGCACTTACCCTTTCCCATCACTCTAAAGAGCTTCTACCACCTATTGTTCCTATGAGCATCATTTCTACACCACTTGAGACGGAGAAGGCAAGGAGATTGATTCATAGAAGAAAAATCGAGAAGAAGGGGAAGATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTGGTCTTGCCTCTATGACATGTCAAGGAGTCCCTTAGCCCCTAACAATAGGGTGGTCGCACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

450

Amino Acids

52.47

Weight (kDa)

4.6

Isoelectric Point (pI)

68.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1037, 1250
AciI CCGC 3 cut(s) 713, 809, 857
AclWI GGATC 5 cut(s) 183, 255, 371, 928, 1010
AcoI YGGCCR 1 cut(s) 1241
AcsI RAATTY 3 cut(s) 8, 116, 812
AfaI GTAC 3 cut(s) 489, 552, 1011
AfiI CCNNNNNNNGG 3 cut(s) 653, 1037, 1250
AflIII ACRYGT 1 cut(s) 1290
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 1 cut(s) 1160
AlwI GGATC 5 cut(s) 183, 255, 371, 928, 1010
AoxI GGCC 3 cut(s) 753, 897, 1241
ApoI RAATTY 3 cut(s) 8, 116, 812
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 607, 1072
AsuNHI GCTAGC 1 cut(s) 401
BalI TGGCCA 1 cut(s) 1243
Bbv12I GWGCWC 1 cut(s) 977
BccI CCATC 6 cut(s) 246, 258, 334, 945, 1057, 1113
BciVI GTATCC 1 cut(s) 1353
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 1160
BfaI CTAG 4 cut(s) 56, 402, 699, 795
BfoI RGCGCY 1 cut(s) 29
BfuI GTATCC 1 cut(s) 1353
BmsI GCATC 6 cut(s) 323, 508, 700, 717, 844, 1155
BmtI GCTAGC 1 cut(s) 405
Bpu10I CCTNAGC 1 cut(s) 1306
BpuEI CTTGAG 3 cut(s) 282, 524, 1184
Bsa29I ATCGAT 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 1001
BsaJI CCNNGG 4 cut(s) 142, 210, 909, 951
Bsc4I CCNNNNNNNGG 3 cut(s) 653, 1037, 1250
Bse3DI GCAATG 1 cut(s) 936
Bse8I GATNNNNATC 1 cut(s) 1001
BseCI ATCGAT 1 cut(s) 250
BseDI CCNNGG 4 cut(s) 142, 210, 909, 951
BseGI GGATG 7 cut(s) 192, 269, 274, 326, 715, 790, 859
BseJI GATNNNNATC 1 cut(s) 1001
BseLI CCNNNNNNNGG 3 cut(s) 653, 1037, 1250
BseMI GCAATG 1 cut(s) 936
BseRI GAGGAG 5 cut(s) 285, 719, 815, 818, 863
BshFI GGCC 3 cut(s) 755, 899, 1243
BshVI ATCGAT 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 977
BslFI GGGAC 1 cut(s) 1287
BslI CCNNNNNNNGG 3 cut(s) 653, 1037, 1250
BsmAI GTCTC 1 cut(s) 1160
BsmBI CGTCTC 1 cut(s) 1160
BsmFI GGGAC 1 cut(s) 1287
BsnI GGCC 3 cut(s) 755, 899, 1243
Bsp1286I GDGCHC 1 cut(s) 977
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 7 cut(s) 175, 247, 301, 376, 457, 933, 1002
Bsp19I CCATGG 2 cut(s) 142, 210
BspACI CCGC 3 cut(s) 713, 809, 857
BspANI GGCC 3 cut(s) 755, 899, 1243
BspDI ATCGAT 1 cut(s) 250
BspHI TCATGA 1 cut(s) 940
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 5 cut(s) 183, 255, 371, 928, 1010
BsrDI GCAATG 1 cut(s) 936
BsrGI TGTACA 1 cut(s) 550
BssECI CCNNGG 4 cut(s) 142, 210, 909, 951
BssMI GATC 7 cut(s) 175, 247, 301, 376, 457, 933, 1002
BssT1I CCWWGG 4 cut(s) 142, 210, 909, 951
Bst6I CTCTTC 3 cut(s) 102, 774, 912
BstAUI TGTACA 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 2 cut(s) 639, 1306
BstDSI CCRYGG 2 cut(s) 142, 210
BstENI CCTNNNNNAGG 1 cut(s) 651
BstF5I GGATG 7 cut(s) 192, 269, 274, 326, 715, 790, 859
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 7 cut(s) 178, 250, 304, 379, 460, 936, 1005
BstMAI GTCTC 1 cut(s) 1160
BstMBI GATC 7 cut(s) 175, 247, 301, 376, 457, 933, 1002
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 1294
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 250
BsuI GTATCC 1 cut(s) 1353
BsuRI GGCC 3 cut(s) 755, 899, 1243
BsuTUI ATCGAT 1 cut(s) 250
BtgI CCRYGG 2 cut(s) 142, 210
BtsCI GGATG 7 cut(s) 192, 269, 274, 326, 715, 790, 859
Cac8I GCNNGC 1 cut(s) 403
CciI TCATGA 1 cut(s) 940
CfoI GCGC 1 cut(s) 28
ClaI ATCGAT 1 cut(s) 250
Csp6I GTAC 3 cut(s) 488, 551, 1010
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviAII CATG 5 cut(s) 143, 211, 926, 941, 1291
CviQI GTAC 3 cut(s) 488, 551, 1010
DdeI CTNAG 2 cut(s) 639, 1306
DpnI GATC 7 cut(s) 177, 249, 303, 378, 459, 935, 1004
DpnII GATC 7 cut(s) 175, 247, 301, 376, 457, 933, 1002
DraI TTTAAA 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 1241
Eam1104I CTCTTC 3 cut(s) 102, 774, 912
EarI CTCTTC 3 cut(s) 102, 774, 912
EciI GGCGGA 1 cut(s) 824
Eco130I CCWWGG 4 cut(s) 142, 210, 909, 951
EcoNI CCTNNNNNAGG 1 cut(s) 651
EcoT14I CCWWGG 4 cut(s) 142, 210, 909, 951
EcoT22I ATGCAT 1 cut(s) 316
ErhI CCWWGG 4 cut(s) 142, 210, 909, 951
Esp3I CGTCTC 1 cut(s) 1160
FaeI CATG 5 cut(s) 146, 214, 929, 944, 1294
FalI AAGNNNNNCTT 4 cut(s) 453, 485, 1220, 1252
FaqI GGGAC 1 cut(s) 1287
FatI CATG 5 cut(s) 142, 210, 925, 940, 1290
FbaI TGATCA 1 cut(s) 457
FokI GGATG 7 cut(s) 199, 276, 281, 313, 722, 797, 866
FspBI CTAG 4 cut(s) 56, 402, 699, 795
GlaI GCGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 3 cut(s) 755, 899, 1243
HhaI GCGC 1 cut(s) 28
Hin1II CATG 5 cut(s) 146, 214, 929, 944, 1294
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 9 cut(s) 64, 130, 215, 512, 674, 770, 922, 1189, 1300
HphI GGTGA 2 cut(s) 607, 1072
Hpy188I TCNGA 4 cut(s) 7, 613, 679, 775
Hpy188III TCNNGA 6 cut(s) 299, 413, 477, 503, 941, 1207
HpyAV CCTTC 4 cut(s) 13, 53, 1168, 1207
HpyCH4V TGCA 9 cut(s) 93, 314, 442, 523, 587, 625, 730, 929, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpyF3I CTNAG 2 cut(s) 639, 1306
Hsp92II CATG 5 cut(s) 146, 214, 929, 944, 1294
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 7 cut(s) 175, 247, 301, 376, 457, 933, 1002
LmnI GCTCC 3 cut(s) 388, 466, 859
LpnPI CCDG 1 cut(s) 158
LweI GCATC 6 cut(s) 323, 508, 700, 717, 844, 1155
MaeI CTAG 4 cut(s) 56, 402, 699, 795
MaeIII GTNAC 1 cut(s) 44
MalI GATC 7 cut(s) 177, 249, 303, 378, 459, 935, 1004
MboI GATC 7 cut(s) 175, 247, 301, 376, 457, 933, 1002
MfeI CAATTG 2 cut(s) 736, 1248
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 977
MlsI TGGCCA 1 cut(s) 1243
MluNI TGGCCA 1 cut(s) 1243
MlyI GAGTC 3 cut(s) 521, 931, 1309
Mox20I TGGCCA 1 cut(s) 1243
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 63
MscI TGGCCA 1 cut(s) 1243
MseI TTAA 4 cut(s) 12, 987, 1034, 1224
Msp20I TGGCCA 1 cut(s) 1243
MunI CAATTG 2 cut(s) 736, 1248
MwoI GCNNNNNNNGC 1 cut(s) 505
NcoI CCATGG 2 cut(s) 142, 210
NdeII GATC 7 cut(s) 175, 247, 301, 376, 457, 933, 1002
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 5 cut(s) 146, 214, 929, 944, 1294
NmuCI GTSAC 1 cut(s) 44
NsiI ATGCAT 1 cut(s) 316
NspI RCATGY 1 cut(s) 1294
PagI TCATGA 1 cut(s) 940
PciI ACATGT 1 cut(s) 1290
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 6 cut(s) 64, 130, 215, 674, 770, 1189
PflMI CCANNNNNTGG 2 cut(s) 1037, 1250
PleI GAGTC 3 cut(s) 520, 930, 1308
PpsI GAGTC 3 cut(s) 520, 930, 1308
PscI ACATGT 1 cut(s) 1290
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 3 cut(s) 489, 552, 1011
RsaNI GTAC 3 cut(s) 488, 551, 1010
SaqAI TTAA 4 cut(s) 12, 987, 1034, 1224
Sau3AI GATC 7 cut(s) 175, 247, 301, 376, 457, 933, 1002
SchI GAGTC 3 cut(s) 521, 931, 1309
SduI GDGCHC 1 cut(s) 977
SfaNI GCATC 6 cut(s) 323, 508, 700, 717, 844, 1155
SmlI CTYRAG 4 cut(s) 297, 503, 1163, 1334
SmoI CTYRAG 4 cut(s) 297, 503, 1163, 1334
SsiI CCGC 3 cut(s) 713, 809, 857
SspI AATATT 1 cut(s) 629
SspMI CTAG 4 cut(s) 56, 402, 699, 795
StyI CCWWGG 4 cut(s) 142, 210, 909, 951
TaqI TCGA 6 cut(s) 51, 123, 157, 250, 304, 1206
TatI WGTACW 2 cut(s) 487, 550
TfiI GAWTC 6 cut(s) 64, 130, 215, 674, 770, 1189
Tru1I TTAA 4 cut(s) 12, 987, 1034, 1224
Tru9I TTAA 4 cut(s) 12, 987, 1034, 1224
TseFI GTSAC 1 cut(s) 44
Tsp45I GTSAC 1 cut(s) 44
TspGWI ACGGA 3 cut(s) 31, 401, 1184
Van91I CCANNNNNTGG 2 cut(s) 1037, 1250
XagI CCTNNNNNAGG 1 cut(s) 651
XapI RAATTY 3 cut(s) 8, 116, 812
XceI RCATGY 1 cut(s) 1294
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 4 cut(s) 56, 402, 699, 795
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.