Rmu_sc0014287.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014287.1
OG0000195
Physical Location & Seq
Reverse (-)
2 .. 513
512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014287.1_g000001.1.cds

Sequence Viewer

Length: 512 bp
atggatcaatggagctatggatgggaagacccaaggggatatgagcaagaaagtttttatggtggaggtcatcaagtgtggaattctcatgcgatcggttctatgtcttcttgcaatgaaccttgtgctttgtgtaattctcctaggcatttatcttttgagtgctctttgagatttgagtgcccagattttatgcaagagtgtgagtacaagatgggcatgtatcaagagacatttatacccaatacatatccacaagaagaagcttatgagcctagtaaggaatttgttgacggactactagctcaattgcacgcctcccaagctctattacaagcctctcaagttagtatttcacaagagaccatggtttccgaagcatatcctcatgagcaagcgtatgagtctaggaagccttgtcttgaagaattgctagctcaattgcaagcctctcaagctctattgcaagcctcccaagctcgattgcaagcttctcaagatatgcttataca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.35

Weight (kDa)

4.44

Isoelectric Point (pI)

69.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 82, 284
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 1 cut(s) 425
AluBI AGCT 8 cut(s) 15, 266, 305, 326, 437, 458, 479, 491
AluI AGCT 8 cut(s) 15, 266, 305, 326, 437, 458, 479, 491
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 2 cut(s) 224, 356
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 2 cut(s) 82, 284
AspA2I CCTAGG 1 cut(s) 143
AsuNHI GCTAGC 1 cut(s) 433
AvrII CCTAGG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 185
BbsI GAAGAC 2 cut(s) 33, 99
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 2 cut(s) 15, 208
BcoDI GTCTC 2 cut(s) 224, 356
BfaI CTAG 5 cut(s) 144, 276, 302, 408, 434
BlnI CCTAGG 1 cut(s) 143
BmtI GCTAGC 1 cut(s) 437
BpiI GAAGAC 2 cut(s) 33, 99
BpuEI CTTGAG 3 cut(s) 327, 438, 480
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 3 cut(s) 32, 143, 366
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 3 cut(s) 32, 143, 366
BseGI GGATG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 167
BsmAI GTCTC 2 cut(s) 224, 356
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 2 cut(s) 167, 185
Bsp143I GATC 2 cut(s) 4, 93
Bsp19I CCATGG 1 cut(s) 366
BspHI TCATGA 1 cut(s) 388
BspOI GCTAGC 1 cut(s) 437
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 3 cut(s) 32, 143, 366
BssMI GATC 2 cut(s) 4, 93
BssT1I CCWWGG 3 cut(s) 32, 143, 366
BstC8I GCNNGC 6 cut(s) 315, 396, 435, 447, 468, 489
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 2 cut(s) 7, 96
BstMAI GTCTC 2 cut(s) 224, 356
BstMBI GATC 2 cut(s) 4, 93
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 3 cut(s) 323, 455, 476
BstNSI RCATGY 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 185
BstV2I GAAGAC 2 cut(s) 33, 99
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 6 cut(s) 315, 396, 435, 447, 468, 489
CciI TCATGA 1 cut(s) 388
Csp6I GTAC 1 cut(s) 208
CviAII CATG 4 cut(s) 89, 220, 367, 389
CviQI GTAC 1 cut(s) 208
DpnI GATC 2 cut(s) 6, 95
DpnII GATC 2 cut(s) 4, 93
Eco130I CCWWGG 3 cut(s) 32, 143, 366
Eco31I GGTCTC 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 82
EcoT14I CCWWGG 3 cut(s) 32, 143, 366
ErhI CCWWGG 3 cut(s) 32, 143, 366
FaeI CATG 4 cut(s) 92, 223, 370, 392
FalI AAGNNNNNCTT 1 cut(s) 489
FatI CATG 4 cut(s) 88, 219, 366, 388
FokI GGATG 1 cut(s) 33
FspBI CTAG 5 cut(s) 144, 276, 302, 408, 434
Hin1II CATG 4 cut(s) 92, 223, 370, 392
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 2 cut(s) 264, 489
HinfI GANTC 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 4 cut(s) 227, 389, 422, 497
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 114, 196, 313, 445, 466, 487
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 455, 476
Hsp92II CATG 4 cut(s) 92, 223, 370, 392
Kzo9I GATC 2 cut(s) 4, 93
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 1 cut(s) 198
MaeI CTAG 5 cut(s) 144, 276, 302, 408, 434
MalI GATC 2 cut(s) 6, 95
MboI GATC 2 cut(s) 4, 93
MboII GAAGA 4 cut(s) 38, 99, 272, 437
MfeI CAATTG 2 cut(s) 308, 440
MhlI GDGCHC 2 cut(s) 167, 185
MluCI AATT 6 cut(s) 82, 136, 284, 308, 428, 440
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 6 cut(s) 59, 328, 349, 396, 460, 481
MunI CAATTG 2 cut(s) 308, 440
MwoI GCNNNNNNNGC 3 cut(s) 323, 455, 476
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 4, 93
NheI GCTAGC 1 cut(s) 433
NlaIII CATG 4 cut(s) 92, 223, 370, 392
NspI RCATGY 1 cut(s) 223
PagI TCATGA 1 cut(s) 388
Ple19I CGATCG 1 cut(s) 96
PleI GAGTC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 412
PvuI CGATCG 1 cut(s) 96
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
Sau3AI GATC 2 cut(s) 4, 93
SchI GAGTC 1 cut(s) 413
SduI GDGCHC 2 cut(s) 167, 185
SmlI CTYRAG 3 cut(s) 342, 453, 495
SmoI CTYRAG 3 cut(s) 342, 453, 495
Sse9I AATT 6 cut(s) 82, 136, 284, 308, 428, 440
SspMI CTAG 5 cut(s) 144, 276, 302, 408, 434
StyI CCWWGG 3 cut(s) 32, 143, 366
TaqI TCGA 1 cut(s) 481
TasI AATT 6 cut(s) 82, 136, 284, 308, 428, 440
TatI WGTACW 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 132
TspGWI ACGGA 1 cut(s) 309
XapI RAATTY 2 cut(s) 82, 284
XceI RCATGY 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 143
XspI CTAG 5 cut(s) 144, 276, 302, 408, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.