Rroxscaffold_1G00015140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000195
Physical Location & Seq
Forward (+)
18855350 .. 18856346
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015140.1

Sequence Viewer

Length: 876 bp
ATGGATCGATCGAGCTATGGATGGGTTGATCGTAGGGGATATGAGCAACAAAGTTATAATGGTGAAGGTTATCAAGAGTGGAATCCCTATGCCGAGAGTCCCGTGCATTGTTACAACCAAGCTTGTGCCTTGTGTAATTCTCCGTGGCATTCACCTTTTAAGTGTTCTTTGAGGTTTGAGTACTCGGATTTTATGCAAGAATATGAGTGCAAGATGGGGATGTATCAAGAGACATTTGTACCCGAAGCATATCCACAAGAGCAAGCTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTAGCTCAATTAGAAGCCTCTAATGCTCAATTGCAAGCCTCCCAAGCTCTATTACGTGCTAAATTGCAAGCCTTCAATGCTCAATTGCAAGCTTCTCAAGACATGTCTTCACATTCCAATGAGAAACTTGAGCCTAATCGAGATGGTGGTGTTCATGTACAAGAAAGTGAGCTTGGTTATAAAAGTTCCAATGCAAGTAGGGTGAGAGATGACATTTCGGAGGAATCGGTGCAATATTGGAGCTCTAATTTTCACAATGAAAAGGAGGTATATGAAGTTGATTCCGAAGAAGATGATAGCTTGTGTAGTGAAGAGGATGTGGAGCTTGAAGACTTACACCATATTCCATTAATTGTTGAAGCCGATATTCCCAAGGAGGAAGAAAGTCCTTCAATACCTTGTGATGATGGAGAAATTGAAGAGACAAGGATTGTCTCTCCTCCCACATCCAAGGAGATCCATCATGAGCTTCTCAAGTTAGAGAGTAGAACATTGAGCACTTATGCTCTTAATGAGAAGATTGAGATTAAGGTACTTTTACCTCTCAATCCACCATTAAGTGGTCAATGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.42

Weight (kDa)

4.47

Isoelectric Point (pI)

70.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 57, 480
AccB7I CCANNNNNTGG 1 cut(s) 860
AclWI GGATC 2 cut(s) 12, 751
AfaI GTAC 4 cut(s) 182, 240, 459, 834
AfiI CCNNNNNNNGG 1 cut(s) 860
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 6 cut(s) 293, 376, 629, 659, 693, 719
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
Alw21I GWGCWC 2 cut(s) 545, 800
Alw26I GTCTC 3 cut(s) 224, 716, 739
AlwI GGATC 2 cut(s) 12, 751
AseI ATTAAT 1 cut(s) 650
AspA2I CCTAGG 1 cut(s) 275
AsuHPI GGTGA 3 cut(s) 74, 144, 514
AvrII CCTAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BanII GRGCYC 1 cut(s) 545
BbsI GAAGAC 2 cut(s) 399, 636
Bbv12I GWGCWC 2 cut(s) 545, 800
BccI CCATC 6 cut(s) 15, 208, 292, 437, 701, 768
BcoDI GTCTC 3 cut(s) 224, 716, 739
BfaI CTAG 3 cut(s) 276, 302, 874
BlnI CCTAGG 1 cut(s) 275
BmcAI AGTACT 1 cut(s) 182
BpiI GAAGAC 2 cut(s) 399, 636
BpuEI CTTGAG 3 cut(s) 381, 449, 758
Bsa29I ATCGAT 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 356
BsaJI CCNNGG 4 cut(s) 143, 275, 672, 750
Bsc4I CCNNNNNNNGG 1 cut(s) 860
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 4 cut(s) 143, 275, 672, 750
BseGI GGATG 4 cut(s) 26, 225, 622, 746
BseLI CCNNNNNNNGG 1 cut(s) 860
BseRI GAGGAG 1 cut(s) 729
Bsh1285I CGRYCG 1 cut(s) 11
BshVI ATCGAT 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 545, 800
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 860
BsmAI GTCTC 3 cut(s) 224, 716, 739
BsmFI GGGAC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 545, 800
Bsp1407I TGTACA 1 cut(s) 457
Bsp143I GATC 4 cut(s) 4, 8, 28, 756
BspDI ATCGAT 1 cut(s) 7
BspHI TCATGA 1 cut(s) 763
BspPI GGATC 2 cut(s) 12, 751
BsrGI TGTACA 1 cut(s) 457
BssECI CCNNGG 4 cut(s) 143, 275, 672, 750
BssMI GATC 4 cut(s) 4, 8, 28, 756
BssT1I CCWWGG 3 cut(s) 275, 672, 750
Bst6I CTCTTC 2 cut(s) 606, 714
BstAUI TGTACA 1 cut(s) 457
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 4 cut(s) 264, 336, 369, 390
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 4 cut(s) 26, 225, 622, 746
BstKTI GATC 4 cut(s) 7, 11, 31, 759
BstMAI GTCTC 3 cut(s) 224, 716, 739
BstMBI GATC 4 cut(s) 4, 8, 28, 756
BstMCI CGRYCG 1 cut(s) 11
BstMWI GCNNNNNNNGC 4 cut(s) 280, 323, 344, 377
BstNSI RCATGY 1 cut(s) 406
BstV2I GAAGAC 2 cut(s) 399, 636
BstX2I RGATCY 1 cut(s) 756
BstYI RGATCY 1 cut(s) 756
Bsu15I ATCGAT 1 cut(s) 7
BsuTUI ATCGAT 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 4 cut(s) 26, 225, 622, 746
Cac8I GCNNGC 4 cut(s) 264, 336, 369, 390
CciI TCATGA 1 cut(s) 763
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 4 cut(s) 181, 239, 458, 833
CviAII CATG 3 cut(s) 403, 455, 764
CviQI GTAC 4 cut(s) 181, 239, 458, 833
DpnI GATC 4 cut(s) 6, 10, 30, 758
DpnII GATC 4 cut(s) 4, 8, 28, 756
Eam1104I CTCTTC 2 cut(s) 606, 714
EarI CTCTTC 2 cut(s) 606, 714
Ecl136II GAGCTC 1 cut(s) 543
Eco130I CCWWGG 3 cut(s) 275, 672, 750
Eco24I GRGCYC 1 cut(s) 545
Eco53kI GAGCTC 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 543
EcoT14I CCWWGG 3 cut(s) 275, 672, 750
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 3 cut(s) 275, 672, 750
FaeI CATG 3 cut(s) 406, 458, 767
FaqI GGGAC 1 cut(s) 84
FatI CATG 3 cut(s) 402, 454, 763
FokI GGATG 4 cut(s) 33, 232, 629, 733
FriOI GRGCYC 1 cut(s) 545
FspBI CTAG 3 cut(s) 276, 302, 874
Hin1II CATG 3 cut(s) 406, 458, 767
HindIII AAGCTT 3 cut(s) 120, 264, 390
HinfI GANTC 4 cut(s) 82, 97, 524, 581
HphI GGTGA 3 cut(s) 74, 144, 514
Hpy188I TCNGA 3 cut(s) 187, 520, 586
Hpy188III TCNNGA 5 cut(s) 74, 227, 398, 440, 764
HpyAV CCTTC 3 cut(s) 59, 382, 699
HpyCH4IV ACGT 1 cut(s) 355
HpyCH4V TGCA 8 cut(s) 106, 196, 210, 334, 367, 388, 494, 532
HpyF10VI GCNNNNNNNGC 4 cut(s) 280, 323, 344, 377
HpySE526I ACGT 1 cut(s) 355
Hsp92II CATG 3 cut(s) 406, 458, 767
Kzo9I GATC 4 cut(s) 4, 8, 28, 756
LmnI GCTCC 2 cut(s) 540, 622
MaeI CTAG 3 cut(s) 276, 302, 874
MaeII ACGT 1 cut(s) 355
MaeIII GTNAC 1 cut(s) 110
MalI GATC 4 cut(s) 6, 10, 30, 758
MboI GATC 4 cut(s) 4, 8, 28, 756
MboII GAAGA 9 cut(s) 305, 399, 599, 602, 623, 641, 692, 731, 829
MfeI CAATTG 2 cut(s) 329, 383
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 2 cut(s) 545, 800
MluCI AATT 8 cut(s) 136, 308, 329, 362, 383, 547, 651, 714
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 9 cut(s) 165, 328, 349, 514, 559, 607, 670, 750, 852
MseI TTAA 5 cut(s) 159, 650, 810, 828, 857
MslI CAYNNNNRTG 1 cut(s) 417
MunI CAATTG 2 cut(s) 329, 383
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 4 cut(s) 280, 323, 344, 377
NdeII GATC 4 cut(s) 4, 8, 28, 756
NlaIII CATG 3 cut(s) 406, 458, 767
NmeAIII GCCGAG 1 cut(s) 118
NspI RCATGY 1 cut(s) 406
PagI TCATGA 1 cut(s) 763
PciI ACATGT 1 cut(s) 402
PctI GAATGC 1 cut(s) 148
PfeI GAWTC 3 cut(s) 82, 524, 581
PflMI CCANNNNNTGG 1 cut(s) 860
Ple19I CGATCG 1 cut(s) 11
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
Ppu21I YACGTR 1 cut(s) 356
PscI ACATGT 1 cut(s) 402
PshBI ATTAAT 1 cut(s) 650
PsiI TTATAA 2 cut(s) 57, 480
Psp124BI GAGCTC 1 cut(s) 545
PsuI RGATCY 1 cut(s) 756
PvuI CGATCG 1 cut(s) 11
RsaI GTAC 4 cut(s) 182, 240, 459, 834
RsaNI GTAC 4 cut(s) 181, 239, 458, 833
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 545
SaqAI TTAA 5 cut(s) 159, 650, 810, 828, 857
Sau3AI GATC 4 cut(s) 4, 8, 28, 756
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 2 cut(s) 545, 800
SmiMI CAYNNNNRTG 1 cut(s) 417
SmlI CTYRAG 3 cut(s) 396, 428, 773
SmoI CTYRAG 3 cut(s) 396, 428, 773
Sse9I AATT 8 cut(s) 136, 308, 329, 362, 383, 547, 651, 714
SspI AATATT 1 cut(s) 536
SspMI CTAG 3 cut(s) 276, 302, 874
SstI GAGCTC 1 cut(s) 545
StyI CCWWGG 3 cut(s) 275, 672, 750
TaiI ACGT 1 cut(s) 358
TaqI TCGA 3 cut(s) 7, 11, 439
TasI AATT 8 cut(s) 136, 308, 329, 362, 383, 547, 651, 714
TatI WGTACW 2 cut(s) 180, 457
TfiI GAWTC 3 cut(s) 82, 524, 581
Tru1I TTAA 5 cut(s) 159, 650, 810, 828, 857
Tru9I TTAA 5 cut(s) 159, 650, 810, 828, 857
TspDTI ATGAA 3 cut(s) 443, 573, 588
TspGWI ACGGA 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 860
VspI ATTAAT 1 cut(s) 650
XceI RCATGY 1 cut(s) 406
XmaJI CCTAGG 1 cut(s) 275
XspI CTAG 3 cut(s) 276, 302, 874
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.