Rmu_sc0028131.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028131.1
OG0000195
Physical Location & Seq
Forward (+)
159 .. 1262
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028131.1_g000001.1.cds

Sequence Viewer

Length: 996 bp
atgggcatgtatcaagagacatttgtacccgaggcatatccacaagagcaagcttttgagcctagaaagccatcacttgaagaacaactagctcaattggaagcctctaatgctcaattgcaagcctcccaagctcaatgtctagcctcccaagctcgattgcatgctaaattggaagccttcaatgctcaattgcaagcttctcaagaaatgacttcacattccaatgagcaacttgagcctaagtttcctattcaagatcaagagggtgatgttcatatacaagaaaatgtacttgattgtggaaattttgatgcaagtgaggtgggagactacatttcggaggaattggtgcaatattggacttctaatctttgcaatgaagaggaggtagttgaagatgattccgaagaagagaatagcttgtttagtgaggaggatgcggagcttgaagagctacaccatgatcccttaatccttgaggccgatattcccaaggaggaagtgagtcctttaatgcattgtaatgataaagaagttgaagagacaaaggttttctctcctcctacatccacggagatccatcatgtgcttcccaaggtagagagtagaacattgagcacttatgttcttagtgagaagattgagattaaggtacttttacctctcaatccaccattaagtggtcaatgtttctacaatgaggtgatggattggaaaggaagtggagcacttgcactcactatttcccatcactctcaaaagtttctaccacctattgttcctaagagcattatttctacatcacttgagaaggagaatgcaagtttggcttctagaagaaaaatagagaagaggaggaagattaagaagctacacttttggtcacccattggaatcttcatggatagctcttggtcttgcctctatgacacatcgaggagtcccttagccccaaacaatagggtggtcgtacttgagaagtatccaccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

37.56

Weight (kDa)

4.68

Isoelectric Point (pI)

64.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 683
AciI CCGC 1 cut(s) 443
AclWI GGATC 2 cut(s) 461, 574
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 4 cut(s) 27, 294, 657, 975
AfiI CCNNNNNNNGG 1 cut(s) 683
AgsI TTSAA 6 cut(s) 80, 184, 257, 398, 452, 542
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
Alw21I GWGCWC 2 cut(s) 623, 733
Alw26I GTCTC 3 cut(s) 11, 324, 539
AlwI GGATC 2 cut(s) 461, 574
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 1 cut(s) 483
ApoI RAATTY 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 281, 718, 879
AvaI CYCGRG 1 cut(s) 29
BaeI ACNNNNGTAYC 2 cut(s) 9, 42
Bbv12I GWGCWC 2 cut(s) 623, 733
BccI CCATC 4 cut(s) 79, 591, 703, 759
BciVI GTATCC 1 cut(s) 996
BcoDI GTCTC 3 cut(s) 11, 324, 539
BfaI CTAG 4 cut(s) 63, 89, 143, 837
BfuI GTATCC 1 cut(s) 996
BmeT110I CYCGRG 1 cut(s) 29
BmsI GCATC 2 cut(s) 304, 430
Bpu10I CCTNAGC 1 cut(s) 949
BpuEI CTTGAG 4 cut(s) 189, 257, 500, 830
BsaJI CCNNGG 4 cut(s) 30, 495, 573, 597
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 30, 495, 573, 597
BseGI GGATG 2 cut(s) 445, 569
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMI GCAATG 1 cut(s) 385
BseRI GAGGAG 5 cut(s) 401, 449, 552, 871, 955
BshFI GGCC 1 cut(s) 485
BsiHKAI GWGCWC 2 cut(s) 623, 733
BsiHKCI CYCGRG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 3 cut(s) 11, 324, 539
BsmFI GGGAC 1 cut(s) 930
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 1 cut(s) 485
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 623, 733
Bsp143I GATC 3 cut(s) 259, 466, 579
BspACI CCGC 1 cut(s) 443
BspANI GGCC 1 cut(s) 485
BspPI GGATC 2 cut(s) 461, 574
BspQI GCTCTTC 1 cut(s) 447
BsrDI GCAATG 1 cut(s) 385
BssECI CCNNGG 4 cut(s) 30, 495, 573, 597
BssMI GATC 3 cut(s) 259, 466, 579
BssT1I CCWWGG 2 cut(s) 495, 597
Bst6I CTCTTC 5 cut(s) 378, 408, 447, 537, 848
BstC8I GCNNGC 4 cut(s) 51, 123, 165, 198
BstDEI CTNAG 4 cut(s) 243, 632, 786, 949
BstDSI CCRYGG 1 cut(s) 573
BstEII GGTNACC 1 cut(s) 885
BstF5I GGATG 2 cut(s) 445, 569
BstKTI GATC 3 cut(s) 262, 469, 582
BstMAI GTCTC 3 cut(s) 11, 324, 539
BstMBI GATC 3 cut(s) 259, 466, 579
BstMWI GCNNNNNNNGC 8 cut(s) 67, 110, 131, 152, 185, 238, 454, 830
BstNSI RCATGY 2 cut(s) 10, 167
BstPI GGTNACC 1 cut(s) 885
BstX2I RGATCY 1 cut(s) 579
BstYI RGATCY 1 cut(s) 579
BsuI GTATCC 1 cut(s) 996
BsuRI GGCC 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 2 cut(s) 445, 569
Cac8I GCNNGC 4 cut(s) 51, 123, 165, 198
Csp6I GTAC 4 cut(s) 26, 293, 656, 974
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 5 cut(s) 7, 164, 464, 587, 904
CviQI GTAC 4 cut(s) 26, 293, 656, 974
DdeI CTNAG 4 cut(s) 243, 632, 786, 949
DpnI GATC 3 cut(s) 261, 468, 581
DpnII GATC 3 cut(s) 259, 466, 579
Eam1104I CTCTTC 5 cut(s) 378, 408, 447, 537, 848
EarI CTCTTC 5 cut(s) 378, 408, 447, 537, 848
Eco130I CCWWGG 2 cut(s) 495, 597
Eco88I CYCGRG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 885
EcoO65I GGTNACC 1 cut(s) 885
EcoT14I CCWWGG 2 cut(s) 495, 597
EcoT22I ATGCAT 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 495, 597
FaeI CATG 5 cut(s) 10, 167, 467, 590, 907
FalI AAGNNNNNCTT 4 cut(s) 817, 849, 863, 895
FaqI GGGAC 1 cut(s) 930
FatI CATG 5 cut(s) 6, 163, 463, 586, 903
FokI GGATG 2 cut(s) 452, 556
FspBI CTAG 4 cut(s) 63, 89, 143, 837
HaeIII GGCC 1 cut(s) 485
Hin1II CATG 5 cut(s) 10, 167, 467, 590, 907
HindIII AAGCTT 2 cut(s) 51, 198
HinfI GANTC 4 cut(s) 404, 508, 897, 943
HphI GGTGA 3 cut(s) 281, 718, 879
Hpy188I TCNGA 2 cut(s) 343, 409
Hpy188III TCNNGA 5 cut(s) 14, 206, 257, 263, 837
HpyAV CCTTC 2 cut(s) 190, 808
HpyCH4V TGCA 9 cut(s) 121, 163, 196, 317, 355, 378, 520, 737, 824
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 110, 131, 152, 185, 238, 454, 830
HpyF3I CTNAG 4 cut(s) 243, 632, 786, 949
Hsp92II CATG 5 cut(s) 10, 167, 467, 590, 907
Kzo9I GATC 3 cut(s) 259, 466, 579
LguI GCTCTTC 1 cut(s) 447
LmnI GCTCC 2 cut(s) 445, 728
LweI GCATC 2 cut(s) 304, 430
MaeI CTAG 4 cut(s) 63, 89, 143, 837
MaeIII GTNAC 1 cut(s) 885
MalI GATC 3 cut(s) 261, 468, 581
MboI GATC 3 cut(s) 259, 466, 579
MfeI CAATTG 3 cut(s) 95, 116, 191
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 2 cut(s) 623, 733
MluCI AATT 6 cut(s) 95, 116, 170, 191, 307, 347
MlyI GAGTC 2 cut(s) 517, 952
Mph1103I ATGCAT 1 cut(s) 522
MseI TTAA 5 cut(s) 473, 515, 651, 680, 867
MslI CAYNNNNRTG 2 cut(s) 225, 525
MunI CAATTG 3 cut(s) 95, 116, 191
Mva1269I GAATGC 1 cut(s) 826
MwoI GCNNNNNNNGC 8 cut(s) 67, 110, 131, 152, 185, 238, 454, 830
NdeII GATC 3 cut(s) 259, 466, 579
NlaIII CATG 5 cut(s) 10, 167, 467, 590, 907
NmuCI GTSAC 1 cut(s) 885
NsiI ATGCAT 1 cut(s) 522
NspI RCATGY 2 cut(s) 10, 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 447
PctI GAATGC 1 cut(s) 826
PfeI GAWTC 2 cut(s) 404, 897
PflMI CCANNNNNTGG 1 cut(s) 683
PleI GAGTC 2 cut(s) 516, 951
PpsI GAGTC 2 cut(s) 516, 951
PspEI GGTNACC 1 cut(s) 885
PsuI RGATCY 1 cut(s) 579
RsaI GTAC 4 cut(s) 27, 294, 657, 975
RsaNI GTAC 4 cut(s) 26, 293, 656, 974
RseI CAYNNNNRTG 2 cut(s) 225, 525
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 5 cut(s) 473, 515, 651, 680, 867
Sau3AI GATC 3 cut(s) 259, 466, 579
SchI GAGTC 2 cut(s) 517, 952
SduI GDGCHC 2 cut(s) 623, 733
SfaNI GCATC 2 cut(s) 304, 430
SmiMI CAYNNNNRTG 2 cut(s) 225, 525
SmlI CTYRAG 5 cut(s) 204, 236, 479, 809, 977
SmoI CTYRAG 5 cut(s) 204, 236, 479, 809, 977
SphI GCATGC 1 cut(s) 167
Sse9I AATT 6 cut(s) 95, 116, 170, 191, 307, 347
SsiI CCGC 1 cut(s) 443
SspI AATATT 1 cut(s) 359
SspMI CTAG 4 cut(s) 63, 89, 143, 837
StyI CCWWGG 2 cut(s) 495, 597
TaqI TCGA 2 cut(s) 157, 938
TasI AATT 6 cut(s) 95, 116, 170, 191, 307, 347
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 2 cut(s) 404, 897
Tru1I TTAA 5 cut(s) 473, 515, 651, 680, 867
Tru9I TTAA 5 cut(s) 473, 515, 651, 680, 867
TseFI GTSAC 1 cut(s) 885
Tsp45I GTSAC 1 cut(s) 885
TspDTI ATGAA 3 cut(s) 266, 396, 892
TspGWI ACGGA 1 cut(s) 590
Van91I CCANNNNNTGG 1 cut(s) 683
XapI RAATTY 1 cut(s) 307
XbaI TCTAGA 1 cut(s) 836
XceI RCATGY 2 cut(s) 10, 167
XspI CTAG 4 cut(s) 63, 89, 143, 837
Zsp2I ATGCAT 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.