Rroxscaffold_5G00349270

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
22126254 .. 22132612
6359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349270.1

Sequence Viewer

Length: 495 bp
ATGGAACTTTCGATGGTTGTTGTTCGTATCAATGAAGTTGTGGATGGGAAGACTCAAGGGGATATAAGCGACAAATTTTTCATGGTGGAGCTTATGGACAAGGGGATACCTATACCAAGGGGTCCTATGCCTTCTTACAACGAACCTTATGCCTTGTGTAACTCTCGAGAAGAAAGGTATATTGAGCATCTTAAGCAAGACTTTGCTATTCAAGTTCAAAATGATGATGTCGATGTGCAAGATAGCGAGCTTGGTTATGAAAGTTACAATGTAGATGAGCTTCACAATGAACATGAGGGATTAGAAGGTGATTCTGAAGAAGATGATGACTTGTCTAGTGAGGAGGTTGAGGAGCTTGAAGACATACACCATGTTTCCTCAATTATTGAGGTCGATATTCCTATGGAGAAACAGCATCCTTCATTACCTTGTGGTAATGATGAAGTTGAAGAGTTAAGGACTCTCTCCTCCCATATCCAAGGAGAACAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.72

Weight (kDa)

4.1

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 336
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 4 cut(s) 212, 218, 359, 449
AluBI AGCT 4 cut(s) 91, 250, 280, 355
AluI AGCT 4 cut(s) 91, 250, 280, 355
Ama87I CYCGRG 1 cut(s) 165
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 122
BarI GAAGNNNNNNTAC 2 cut(s) 264, 296
BbsI GAAGAC 2 cut(s) 56, 366
BccI CCATC 2 cut(s) 7, 38
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciVI GTATCC 1 cut(s) 99
BfaI CTAG 1 cut(s) 336
BfrI CTTAAG 1 cut(s) 191
BfuI GTATCC 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 2 cut(s) 196, 424
BpiI GAAGAC 2 cut(s) 56, 366
BpuEI CTTGAG 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 116, 478
BseDI CCNNGG 2 cut(s) 116, 478
BseGI GGATG 2 cut(s) 49, 415
BseRI GAGGAG 3 cut(s) 356, 365, 457
BsiHKCI CYCGRG 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 191
BssECI CCNNGG 2 cut(s) 116, 478
BssT1I CCWWGG 2 cut(s) 116, 478
Bst6I CTCTTC 1 cut(s) 444
BstAFI CTTAAG 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 248
BstF5I GGATG 2 cut(s) 49, 415
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstV2I GAAGAC 2 cut(s) 56, 366
BsuI GTATCC 1 cut(s) 99
BtsCI GGATG 2 cut(s) 49, 415
Cac8I GCNNGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 122
CviAII CATG 3 cut(s) 82, 293, 371
CviJI RGCY 4 cut(s) 91, 250, 280, 355
CviKI_1 RGCY 4 cut(s) 91, 250, 280, 355
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 2 cut(s) 116, 478
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 122
EcoT14I CCWWGG 2 cut(s) 116, 478
ErhI CCWWGG 2 cut(s) 116, 478
FaeI CATG 3 cut(s) 85, 296, 374
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 3 cut(s) 81, 292, 370
FokI GGATG 2 cut(s) 56, 402
FspBI CTAG 1 cut(s) 336
Hin1II CATG 3 cut(s) 85, 296, 374
HinfI GANTC 3 cut(s) 52, 311, 460
HphI GGTGA 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 165, 167
HpyAV CCTTC 3 cut(s) 141, 299, 429
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 3 cut(s) 85, 296, 374
LmnI GCTCC 2 cut(s) 88, 352
LweI GCATC 2 cut(s) 196, 424
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 158, 263
MboII GAAGA 6 cut(s) 61, 182, 329, 332, 371, 461
MluCI AATT 2 cut(s) 74, 381
MlyI GAGTC 2 cut(s) 46, 454
MnlI CCTC 7 cut(s) 289, 334, 337, 343, 382, 388, 478
MseI TTAA 2 cut(s) 192, 455
MspCI CTTAAG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 85, 296, 374
NlaIV GGNNCC 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 165
PfeI GAWTC 1 cut(s) 311
PleI GAGTC 2 cut(s) 46, 454
PpsI GAGTC 2 cut(s) 46, 454
PpuMI RGGWCCY 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 122
PspPPI RGGWCCY 1 cut(s) 122
SaqAI TTAA 2 cut(s) 192, 455
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 2 cut(s) 46, 454
SfaNI GCATC 2 cut(s) 196, 424
Sfr274I CTCGAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 165
SmlI CTYRAG 3 cut(s) 54, 165, 191
SmoI CTYRAG 3 cut(s) 54, 165, 191
Sse9I AATT 2 cut(s) 74, 381
SspMI CTAG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 116, 478
TaqI TCGA 4 cut(s) 11, 166, 231, 393
TasI AATT 2 cut(s) 74, 381
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 192, 455
Tru9I TTAA 2 cut(s) 192, 455
TspDTI ATGAA 6 cut(s) 48, 70, 273, 303, 411, 456
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 165
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.