Rroxscaffold_7G00215450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000195
Physical Location & Seq
Forward (+)
66028243 .. 66029365
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215450.1

Sequence Viewer

Length: 1035 bp
ATGGATCAATGGAGCTATGGATGGGAAGACCCATGGGGATATGAGCAAGAAAGTCTACATGGTGGAGGCTATCAAGCTTATGAGCCTAGGAAGGAATTCGTTGAAGGACTACTAGCTCAATTGCAAGCCTCTCAATCTCTATTGCAAGCCTCCCAAGCTCGATTGCAAGCTTCTCAAGAGATGCTTATACATTCCAACGAGCAACTTAAGGCTAGTCTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGACCAAATGGAGCCTAATTCAAGAGAAGAAGTATATTATGAGCATTATGAACAAGAGTTGCCTATTCAAGATCGAGATGGTGATGTTGATGAACAAGAAAGTGAGCTTGGTTATGAAAGTTTCAATGCAAGTGGGGTGAGAGACTACCCTTCGGAGGAATGGGTGCAATATTGGAAATCTAAGCTTCCTAATGGAGGGGAGATATTTGAAGATGATTCCGAAGAGGAAGATGTCTTTTCTAGTGAGGAGGATGCATTGATATTTCCCATGGGGGATGAGAGTCCTTCAATACTTTGTGATGGTGAAGAAATTAAAGAGGCAAGGACTTTCTCTTCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGAGGGTAGGACATTGAGTACTTATATTCTTTATGGAAAAATTGAGATTAAGGTATTTTTATCTCTCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAGTGGAGCACTTACACTCAACCTTTCCCATCACTCTCGGGAGCTTCTACCACCTATTATTTGTAAGAGCATTATTTCTATACCACTTGAGAAGGAGAAGGCAAGTATATTGGCTCCTAGAAGAAAAATTGAGAAGAAGAGGAAAATTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTACCTCTTGGTATTGCCTCTATGACATGTCAATGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGCACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

39.65

Weight (kDa)

4.65

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 719, 932
AccI GTMKAC 1 cut(s) 55
AclWI GGATC 2 cut(s) 12, 610
AcoI YGGCCR 1 cut(s) 923
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 2 cut(s) 658, 949
AfiI CCNNNNNNNGG 4 cut(s) 418, 458, 719, 932
AflII CTTAAG 1 cut(s) 206
AflIII ACRYGT 1 cut(s) 972
AgsI TTSAA 6 cut(s) 104, 285, 332, 388, 473, 552
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 2 cut(s) 12, 610
Ama87I CYCGRG 1 cut(s) 795
AoxI GGCC 1 cut(s) 923
ApoI RAATTY 1 cut(s) 95
Asp700I GAANNNNTTC 1 cut(s) 95
AspA2I CCTAGG 1 cut(s) 86
AsuHPI GGTGA 5 cut(s) 229, 356, 412, 578, 754
AvaI CYCGRG 1 cut(s) 795
AvrII CCTAGG 1 cut(s) 86
BalI TGGCCA 1 cut(s) 925
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 769
BccI CCATC 6 cut(s) 15, 335, 557, 627, 739, 795
BciVI GTATCC 1 cut(s) 1035
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 5 cut(s) 87, 113, 213, 504, 876
BfrI CTTAAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 1035
BlnI CCTAGG 1 cut(s) 86
BmcAI AGTACT 1 cut(s) 658
BmeT110I CYCGRG 1 cut(s) 795
BmiI GGNNCC 2 cut(s) 276, 873
BmsI GCATC 2 cut(s) 171, 505
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 988
BpuEI CTTGAG 2 cut(s) 159, 866
BsaJI CCNNGG 5 cut(s) 32, 86, 531, 609, 633
Bsc4I CCNNNNNNNGG 4 cut(s) 418, 458, 719, 932
BseDI CCNNGG 5 cut(s) 32, 86, 531, 609, 633
BseGI GGATG 4 cut(s) 26, 520, 544, 605
BseLI CCNNNNNNNGG 4 cut(s) 418, 458, 719, 932
BseRI GAGGAG 1 cut(s) 524
BshFI GGCC 1 cut(s) 925
BsiHKAI GWGCWC 1 cut(s) 769
BsiHKCI CYCGRG 1 cut(s) 795
BslFI GGGAC 1 cut(s) 969
BslI CCNNNNNNNGG 4 cut(s) 418, 458, 719, 932
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 969
BsnI GGCC 1 cut(s) 925
BsoBI CYCGRG 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 769
Bsp143I GATC 3 cut(s) 4, 334, 615
Bsp19I CCATGG 3 cut(s) 32, 531, 609
BspANI GGCC 1 cut(s) 925
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 276, 873
BspPI GGATC 2 cut(s) 12, 610
BspTI CTTAAG 1 cut(s) 206
BssECI CCNNGG 5 cut(s) 32, 86, 531, 609, 633
BssMI GATC 3 cut(s) 4, 334, 615
BssT1I CCWWGG 5 cut(s) 32, 86, 531, 609, 633
Bst6I CTCTTC 3 cut(s) 480, 601, 890
BstAFI CTTAAG 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 126, 147, 168
BstDEI CTNAG 2 cut(s) 444, 988
BstDSI CCRYGG 3 cut(s) 32, 531, 609
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 4 cut(s) 26, 520, 544, 605
BstKTI GATC 3 cut(s) 7, 337, 618
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 3 cut(s) 4, 334, 615
BstMWI GCNNNNNNNGC 2 cut(s) 155, 218
BstNSI RCATGY 1 cut(s) 976
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 615
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 615
BsuI GTATCC 1 cut(s) 1035
BsuRI GGCC 1 cut(s) 925
BtgI CCRYGG 3 cut(s) 32, 531, 609
BtsCI GGATG 4 cut(s) 26, 520, 544, 605
Cac8I GCNNGC 3 cut(s) 126, 147, 168
CciI TCATGA 1 cut(s) 622
Csp6I GTAC 2 cut(s) 657, 948
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 7 cut(s) 33, 59, 251, 532, 610, 623, 973
CviQI GTAC 2 cut(s) 657, 948
DdeI CTNAG 2 cut(s) 444, 988
DpnI GATC 3 cut(s) 6, 336, 617
DpnII GATC 3 cut(s) 4, 334, 615
EaeI YGGCCR 1 cut(s) 923
Eam1104I CTCTTC 3 cut(s) 480, 601, 890
EarI CTCTTC 3 cut(s) 480, 601, 890
Eco130I CCWWGG 5 cut(s) 32, 86, 531, 609, 633
Eco88I CYCGRG 1 cut(s) 795
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 5 cut(s) 32, 86, 531, 609, 633
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 5 cut(s) 32, 86, 531, 609, 633
FaeI CATG 7 cut(s) 36, 62, 254, 535, 613, 626, 976
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 902, 934
FaqI GGGAC 1 cut(s) 969
FatI CATG 7 cut(s) 32, 58, 250, 531, 609, 622, 972
FblI GTMKAC 1 cut(s) 55
FokI GGATG 4 cut(s) 33, 527, 551, 592
FspBI CTAG 5 cut(s) 87, 113, 213, 504, 876
HaeIII GGCC 1 cut(s) 925
Hin1II CATG 7 cut(s) 36, 62, 254, 535, 613, 626, 976
HindIII AAGCTT 3 cut(s) 75, 168, 446
HinfI GANTC 4 cut(s) 254, 479, 544, 982
HphI GGTGA 5 cut(s) 229, 356, 412, 578, 754
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 418, 484
Hpy188III TCNNGA 6 cut(s) 176, 285, 332, 338, 623, 797
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 7 cut(s) 85, 98, 244, 423, 558, 844, 850
HpyCH4V TGCA 7 cut(s) 124, 145, 166, 221, 392, 430, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 218
HpyF3I CTNAG 2 cut(s) 444, 988
Hsp92II CATG 7 cut(s) 36, 62, 254, 535, 613, 626, 976
Kzo9I GATC 3 cut(s) 4, 334, 615
LmnI GCTCC 5 cut(s) 12, 274, 764, 799, 877
LweI GCATC 2 cut(s) 171, 505
MaeI CTAG 5 cut(s) 87, 113, 213, 504, 876
MalI GATC 3 cut(s) 6, 336, 617
MboI GATC 3 cut(s) 4, 334, 615
MfeI CAATTG 2 cut(s) 119, 930
MflI RGATCY 1 cut(s) 615
MhlI GDGCHC 1 cut(s) 769
MlsI TGGCCA 1 cut(s) 925
MluCI AATT 8 cut(s) 95, 119, 280, 573, 678, 885, 903, 930
MluNI TGGCCA 1 cut(s) 925
MlyI GAGTC 2 cut(s) 553, 991
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 1 cut(s) 925
Mph1103I ATGCAT 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 925
MseI TTAA 5 cut(s) 207, 576, 687, 716, 906
MslI CAYNNNNRTG 2 cut(s) 608, 977
Msp20I TGGCCA 1 cut(s) 925
MspCI CTTAAG 1 cut(s) 206
MunI CAATTG 2 cut(s) 119, 930
MwoI GCNNNNNNNGC 2 cut(s) 155, 218
NcoI CCATGG 3 cut(s) 32, 531, 609
NdeII GATC 3 cut(s) 4, 334, 615
NlaIII CATG 7 cut(s) 36, 62, 254, 535, 613, 626, 976
NlaIV GGNNCC 2 cut(s) 276, 873
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 976
PagI TCATGA 1 cut(s) 622
PciI ACATGT 1 cut(s) 972
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 254, 479
PflMI CCANNNNNTGG 2 cut(s) 719, 932
PleI GAGTC 2 cut(s) 552, 990
PpsI GAGTC 2 cut(s) 552, 990
PscI ACATGT 1 cut(s) 972
PspN4I GGNNCC 2 cut(s) 276, 873
PsuI RGATCY 1 cut(s) 615
RsaI GTAC 2 cut(s) 658, 949
RsaNI GTAC 2 cut(s) 657, 948
RseI CAYNNNNRTG 2 cut(s) 608, 977
SaqAI TTAA 5 cut(s) 207, 576, 687, 716, 906
Sau3AI GATC 3 cut(s) 4, 334, 615
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 2 cut(s) 553, 991
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 2 cut(s) 171, 505
SmiMI CAYNNNNRTG 2 cut(s) 608, 977
SmlI CTYRAG 4 cut(s) 174, 206, 845, 1016
SmoI CTYRAG 4 cut(s) 174, 206, 845, 1016
Sse9I AATT 8 cut(s) 95, 119, 280, 573, 678, 885, 903, 930
SspI AATATT 1 cut(s) 434
SspMI CTAG 5 cut(s) 87, 113, 213, 504, 876
StyI CCWWGG 5 cut(s) 32, 86, 531, 609, 633
TaqI TCGA 2 cut(s) 160, 337
TasI AATT 8 cut(s) 95, 119, 280, 573, 678, 885, 903, 930
TatI WGTACW 1 cut(s) 656
TfiI GAWTC 2 cut(s) 254, 479
Tru1I TTAA 5 cut(s) 207, 576, 687, 716, 906
Tru9I TTAA 5 cut(s) 207, 576, 687, 716, 906
TspDTI ATGAA 4 cut(s) 267, 327, 369, 393
Van91I CCANNNNNTGG 2 cut(s) 719, 932
Vha464I CTTAAG 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 1 cut(s) 95
XceI RCATGY 1 cut(s) 976
XmaJI CCTAGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 5 cut(s) 87, 113, 213, 504, 876
ZrmI AGTACT 1 cut(s) 658
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.