Rroxscaffold_7G00191850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000195
Physical Location & Seq
Forward (+)
32700299 .. 32714145
13847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191850.1

Sequence Viewer

Length: 1284 bp
ATGTCTAAAACAAAGGTAAAAGTTTTACCACAAAGACGAGACAAGATTTATGATTACAAGCATTTTTATGCGCCTATGGATCAATGGAGCTATGGATGGGATGATCGTAGGGGATATGAGCAACAAAGTTATAATGGTGAAGGTTATCAAGAATGGAATCCCTATGCCGAGAGTCTTATGCCTTGTTACAACCAACCTTGTGCTTTGTGTAATTCTCCGTGGCATTCACCTTTTGAGTGTTCTTTGAGGTTTGAGTACCGGGATTTTATGCAAGAATATGAGTACAAGTTGGGGATGTATCAAGAGAAATGTGTACCCGAAGCATATCCACAAGAGCAAGCTTTTGAGCCTAGGAAGCCATCACTTGAAGAACAACTTGCTCAATTGCAAGCCTCTAATGCTCAATTGCAAGCCTCCCAAGCTCAATGTCTAGCCTCTCAAGCTCGATTGCACGCTAAATTGGAAGCCTTTAATGCTCAATGGCAAGCTTCTCAAGAAATGACTTCACATTCCAATGAGCAACTTGAGCCTAGTCTTGAGCAAGAGCCACCATTCACCATTTGTCATGAGCAAGATTCTTTCTTTGATCAAGTGGAGCCTAATTCAAGAGAAGGAATATATTTTGAGCATCATGAACAAGAGTGGCTTCTTCAAGATCGAGAGGAATTGGTGCAATATTGGAAATCTAATCTTCACAATGAAGATGAGGTATATGAAGTTGATTCCGAAGAAGATGATAGCTTGTCTAGTGAGGAGGATGCGGAGCTTGAAGAGCTACACCATGATCCCTTAATCCTTGAGGCCGATATTCCCAAGGAGGAAGAGAGTCCTTTAATGCCTTGTGATGATGAAGAAATTGAAGAGTCAAGGACTTTCTCTCCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGATTGCAGAATATTGAGCACTTATGTTATTAATGAGAAGATTGAGCTTAAGGTACTTTTACCTCTCAATTCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATTGATTGGAAAGGAAGTGGAGCACTTGCACTCAACCTTTCCCATCACTCTCAAGAGTTTCTACCACCTATTGTTCCTAAGAGCATTATTTCAACACCACTTGAGAAGGAGAATGCAAGGTTGGCTTCTAGAAGAAAAATAGAGAAGAGGAGGAAGATTAAGAAGCTCCACTTTTGGTCACCAATTGCAATCTTCATGAATAGCTCTTGGCCTTCCCTCTATGACATCTCTTGGCCTTCCCTTAGCCCCAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

50.21

Weight (kDa)

4.75

Isoelectric Point (pI)

68.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 1001
AciI CCGC 1 cut(s) 761
AclWI GGATC 3 cut(s) 87, 779, 892
AfaI GTAC 4 cut(s) 257, 284, 315, 975
AfiI CCNNNNNNNGG 1 cut(s) 1001
AflII CTTAAG 1 cut(s) 968
AgsI TTSAA 6 cut(s) 368, 606, 653, 770, 860, 1119
AjuI GAANNNNNNNTTGG 2 cut(s) 1130, 1162
Alw21I GWGCWC 2 cut(s) 941, 1051
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 3 cut(s) 87, 779, 892
AoxI GGCC 3 cut(s) 801, 1235, 1259
AseI ATTAAT 1 cut(s) 951
AspA2I CCTAGG 1 cut(s) 350
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 6 cut(s) 149, 219, 547, 984, 1036, 1197
AvrII CCTAGG 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 941, 1051
BccI CCATC 4 cut(s) 90, 367, 909, 1077
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 5 cut(s) 351, 431, 531, 747, 1155
BfrI CTTAAG 1 cut(s) 968
BlnI CCTAGG 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 637, 748
Bpu10I CCTNAGC 1 cut(s) 1268
BpuEI CTTGAG 7 cut(s) 423, 477, 545, 557, 818, 1062, 1148
BpuMI CCSGG 1 cut(s) 260
BsaJI CCNNGG 5 cut(s) 218, 350, 813, 891, 915
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bsc4I CCNNNNNNNGG 1 cut(s) 1001
BseDI CCNNGG 5 cut(s) 218, 350, 813, 891, 915
BseGI GGATG 5 cut(s) 101, 106, 300, 763, 887
BseLI CCNNNNNNNGG 1 cut(s) 1001
BseRI GAGGAG 3 cut(s) 767, 870, 1189
BshFI GGCC 3 cut(s) 803, 1237, 1261
BsiHKAI GWGCWC 2 cut(s) 941, 1051
BsiSI CCGG 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 1001
BsmAI GTCTC 1 cut(s) 33
BsmI GAATGC 2 cut(s) 223, 1144
BsnI GGCC 3 cut(s) 803, 1237, 1261
Bsp1286I GDGCHC 2 cut(s) 941, 1051
Bsp143I GATC 6 cut(s) 79, 103, 586, 655, 784, 897
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 1 cut(s) 761
BspANI GGCC 3 cut(s) 803, 1237, 1261
BspHI TCATGA 4 cut(s) 565, 631, 904, 1221
BspLI GGNNCC 1 cut(s) 597
BspPI GGATC 3 cut(s) 87, 779, 892
BspQI GCTCTTC 1 cut(s) 765
BspTI CTTAAG 1 cut(s) 968
BssECI CCNNGG 5 cut(s) 218, 350, 813, 891, 915
BssMI GATC 6 cut(s) 79, 103, 586, 655, 784, 897
BssT1I CCWWGG 4 cut(s) 350, 813, 891, 915
Bst6I CTCTTC 4 cut(s) 765, 816, 855, 1166
BstAFI CTTAAG 1 cut(s) 968
BstC8I GCNNGC 5 cut(s) 339, 390, 411, 453, 486
BstDEI CTNAG 2 cut(s) 1104, 1268
BstDSI CCRYGG 2 cut(s) 218, 891
BstEII GGTNACC 1 cut(s) 1203
BstF5I GGATG 5 cut(s) 101, 106, 300, 763, 887
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 6 cut(s) 82, 106, 589, 658, 787, 900
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 6 cut(s) 79, 103, 586, 655, 784, 897
BstMWI GCNNNNNNNGC 8 cut(s) 355, 398, 419, 440, 473, 526, 772, 1148
BstPI GGTNACC 1 cut(s) 1203
BstSCI CCNGG 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 897
BstXI CCANNNNNNTGG 1 cut(s) 892
BstYI RGATCY 1 cut(s) 897
BsuRI GGCC 3 cut(s) 803, 1237, 1261
BtgI CCRYGG 2 cut(s) 218, 891
BtsCI GGATG 5 cut(s) 101, 106, 300, 763, 887
Cac8I GCNNGC 5 cut(s) 339, 390, 411, 453, 486
CciI TCATGA 4 cut(s) 565, 631, 904, 1221
CfoI GCGC 1 cut(s) 73
Csp6I GTAC 4 cut(s) 256, 283, 314, 974
CviAII CATG 6 cut(s) 566, 632, 782, 892, 905, 1222
CviQI GTAC 4 cut(s) 256, 283, 314, 974
DdeI CTNAG 2 cut(s) 1104, 1268
DpnI GATC 6 cut(s) 81, 105, 588, 657, 786, 899
DpnII GATC 6 cut(s) 79, 103, 586, 655, 784, 897
Eam1104I CTCTTC 4 cut(s) 765, 816, 855, 1166
EarI CTCTTC 4 cut(s) 765, 816, 855, 1166
Eco130I CCWWGG 4 cut(s) 350, 813, 891, 915
Eco91I GGTNACC 1 cut(s) 1203
EcoO65I GGTNACC 1 cut(s) 1203
EcoT14I CCWWGG 4 cut(s) 350, 813, 891, 915
ErhI CCWWGG 4 cut(s) 350, 813, 891, 915
FaeI CATG 6 cut(s) 569, 635, 785, 895, 908, 1225
FalI AAGNNNNNCTT 8 cut(s) 360, 392, 630, 662, 1135, 1167, 1181, 1213
FatI CATG 6 cut(s) 565, 631, 781, 891, 904, 1221
FbaI TGATCA 1 cut(s) 586
FokI GGATG 5 cut(s) 108, 113, 307, 770, 874
FspBI CTAG 5 cut(s) 351, 431, 531, 747, 1155
GlaI GCGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 803, 1237, 1261
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 73
Hin1II CATG 6 cut(s) 569, 635, 785, 895, 908, 1225
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 2 cut(s) 339, 486
HinfI GANTC 6 cut(s) 157, 172, 575, 722, 826, 863
HpaII CCGG 1 cut(s) 259
HphI GGTGA 6 cut(s) 149, 219, 547, 984, 1036, 1197
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 1 cut(s) 727
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 5 cut(s) 134, 605, 1126, 1248, 1272
HpyCH4V TGCA 9 cut(s) 271, 388, 409, 451, 673, 927, 1055, 1142, 1214
HpyF10VI GCNNNNNNNGC 8 cut(s) 355, 398, 419, 440, 473, 526, 772, 1148
HpyF3I CTNAG 2 cut(s) 1104, 1268
Hsp92II CATG 6 cut(s) 569, 635, 785, 895, 908, 1225
HspAI GCGC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 6 cut(s) 79, 103, 586, 655, 784, 897
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 5 cut(s) 87, 595, 763, 1046, 1197
LpnPI CCDG 1 cut(s) 272
LweI GCATC 2 cut(s) 637, 748
MaeI CTAG 5 cut(s) 351, 431, 531, 747, 1155
MaeIII GTNAC 2 cut(s) 185, 1203
MalI GATC 6 cut(s) 81, 105, 588, 657, 786, 899
MboI GATC 6 cut(s) 79, 103, 586, 655, 784, 897
MfeI CAATTG 3 cut(s) 383, 404, 1209
MflI RGATCY 1 cut(s) 897
MhlI GDGCHC 2 cut(s) 941, 1051
MluCI AATT 9 cut(s) 211, 383, 404, 458, 601, 665, 855, 988, 1209
MlyI GAGTC 3 cut(s) 181, 835, 872
MseI TTAA 7 cut(s) 471, 791, 833, 951, 969, 998, 1185
MslI CAYNNNNRTG 3 cut(s) 66, 513, 890
MspCI CTTAAG 1 cut(s) 968
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 260
MunI CAATTG 3 cut(s) 383, 404, 1209
Mva1269I GAATGC 2 cut(s) 223, 1144
MwoI GCNNNNNNNGC 8 cut(s) 355, 398, 419, 440, 473, 526, 772, 1148
NciI CCSGG 1 cut(s) 260
NcoI CCATGG 1 cut(s) 891
NdeII GATC 6 cut(s) 79, 103, 586, 655, 784, 897
NlaIII CATG 6 cut(s) 569, 635, 785, 895, 908, 1225
NlaIV GGNNCC 1 cut(s) 597
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 1203
PagI TCATGA 4 cut(s) 565, 631, 904, 1221
PciSI GCTCTTC 1 cut(s) 765
PctI GAATGC 2 cut(s) 223, 1144
PfeI GAWTC 3 cut(s) 157, 575, 722
PflMI CCANNNNNTGG 1 cut(s) 1001
PleI GAGTC 3 cut(s) 180, 834, 871
PpsI GAGTC 3 cut(s) 180, 834, 871
PshBI ATTAAT 1 cut(s) 951
PsiI TTATAA 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 1203
PspN4I GGNNCC 1 cut(s) 597
PsuI RGATCY 1 cut(s) 897
RsaI GTAC 4 cut(s) 257, 284, 315, 975
RsaNI GTAC 4 cut(s) 256, 283, 314, 974
RseI CAYNNNNRTG 3 cut(s) 66, 513, 890
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 7 cut(s) 471, 791, 833, 951, 969, 998, 1185
Sau3AI GATC 6 cut(s) 79, 103, 586, 655, 784, 897
SchI GAGTC 3 cut(s) 181, 835, 872
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 2 cut(s) 941, 1051
SfaNI GCATC 2 cut(s) 637, 748
SmiMI CAYNNNNRTG 3 cut(s) 66, 513, 890
SmlI CTYRAG 8 cut(s) 438, 492, 524, 536, 797, 968, 1077, 1127
SmoI CTYRAG 8 cut(s) 438, 492, 524, 536, 797, 968, 1077, 1127
Sse9I AATT 9 cut(s) 211, 383, 404, 458, 601, 665, 855, 988, 1209
SsiI CCGC 1 cut(s) 761
SspI AATATT 2 cut(s) 677, 933
SspMI CTAG 5 cut(s) 351, 431, 531, 747, 1155
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 4 cut(s) 350, 813, 891, 915
TaqI TCGA 2 cut(s) 445, 658
TasI AATT 9 cut(s) 211, 383, 404, 458, 601, 665, 855, 988, 1209
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 3 cut(s) 157, 575, 722
Tru1I TTAA 7 cut(s) 471, 791, 833, 951, 969, 998, 1185
Tru9I TTAA 7 cut(s) 471, 791, 833, 951, 969, 998, 1185
TseFI GTSAC 1 cut(s) 1203
Tsp45I GTSAC 1 cut(s) 1203
TspDTI ATGAA 6 cut(s) 648, 714, 729, 864, 1210, 1238
TspGWI ACGGA 1 cut(s) 207
Van91I CCANNNNNTGG 1 cut(s) 1001
Vha464I CTTAAG 1 cut(s) 968
VspI ATTAAT 1 cut(s) 951
XbaI TCTAGA 1 cut(s) 1154
XmaJI CCTAGG 1 cut(s) 350
XspI CTAG 5 cut(s) 351, 431, 531, 747, 1155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.