Rroxscaffold_4G00282590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000195
Physical Location & Seq
Forward (+)
4655941 .. 4659953
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282590.1

Sequence Viewer

Length: 1284 bp
ATGGCTGAAAGTAGGGGTAATTTCGCAGTTGACCGTTGTTATGGGTTAATTGGTGGCCATCAAGAGTGTGAGTACGTGTATCAAGAGACATTTGTATCCGATCCATATCCACAAGAGGAAGCTTATGAGCCTAGGAAGAAATTTTTTGAAGGACTACTAGCTCAATTGCAAGCCTCACAAGTTAGGATTTCACAAGAGACCATGGTGCCCGAAGCATATCCTCATGAGCAAGCATATGAGTCTAGGAGGCCTTCTCTTGAAGAATTGCTAGCTCAATTGCAAGCTTCTCAAGCCCAATTGCAAGCGTCACAAGTTCAATTGCAAGCTTCTCAAGAAATGCTTATACATTCCAATGAGCAACTTGAGACTAGACTTGCACAAGAGCCACCCTTCACCAATTATGAGCATGAATCTTTCTTTAACCAAGTGGAGCCTATTTCAAGAGAAGAGGTACATGTCAAGCATCTTGAACAAGAGTCGTTTATGCAAATTGAAAATGATGATAGTGATGTTGATGTACAAGAAATTGAGTTTGGTTATGAAAGTTTCAATGCAAGTGGGGTGAGAGACTACACTTCGGAGGAATGGGTGCAATATTGGAAATCTAAGACTCCTAATGGAGAGAAGATATTTGAAGATGATTCCGAAGAAGAGGATGTCTTGTCTAGTGAGGAGGATGCGGAATTTGAAGTTATACACCATAATCCCTTGTTCATTGAGGAGGATGCGGAGCTTGAAGTCATATACCATAATCCCTTATTTGTTGAGGTTGATATTCCCATAGAGGAAGTGAGTCCTTCAATACTTTGTGATGGTGAAGAAATTGAAGAGCCAAGGACTTTCTCTCCTCCCACATCCAAAGAGTTCCATCATGAGCTTCCCAAGGTGGAGAGTAGAACATTGAGCACTTATGTTCTTAATGAGAGGATTGAGATCAAGGTACTTTTACCTCTCAATCCACCATTAAGTGATCAATGTTTCTACAATGAGGTGATAGATTGGAAAGGAAGTGAACCTCTTGCACTCAACCTTTCCCATCACTTGCAAGAACTTCTACCACCTATTGTTCCTATGAGCATTATTTCTGCACAACTTGAGAAGGAGAAGGCAAGGAGATTAATTCCTAGAAGAAAAATTGAGAAGAAGAGGAAATCTAAGAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTATGTAGCTCTTGGTCTTGTCTCTATGATACATCAATGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

49.56

Weight (kDa)

4.61

Isoelectric Point (pI)

67.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccB7I CCANNNNNTGG 1 cut(s) 1181
AciI CCGC 2 cut(s) 680, 728
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 2 cut(s) 55, 1172
AcsI RAATTY 2 cut(s) 140, 683
AfaI GTAC 5 cut(s) 74, 453, 519, 942, 1263
AfiI CCNNNNNNNGG 1 cut(s) 1181
AflIII ACRYGT 2 cut(s) 75, 454
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 9 cut(s) 122, 161, 272, 284, 326, 733, 877, 1162, 1200
AluI AGCT 9 cut(s) 122, 161, 272, 284, 326, 733, 877, 1162, 1200
Alw21I GWGCWC 1 cut(s) 908
Alw26I GTCTC 5 cut(s) 80, 191, 359, 561, 1217
AlwI GGATC 1 cut(s) 95
AoxI GGCC 3 cut(s) 55, 248, 1172
ApoI RAATTY 2 cut(s) 140, 683
AseI ATTAAT 1 cut(s) 1118
AspA2I CCTAGG 1 cut(s) 131
AsuHPI GGTGA 4 cut(s) 385, 574, 827, 1003
AsuNHI GCTAGC 1 cut(s) 268
AvrII CCTAGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 210
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
BalI TGGCCA 2 cut(s) 57, 1174
BanI GGYRCC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 908
BccI CCATC 4 cut(s) 66, 806, 876, 1044
BciVI GTATCC 2 cut(s) 106, 1284
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 5 cut(s) 80, 191, 359, 561, 1217
BfaI CTAG 7 cut(s) 132, 158, 243, 269, 369, 666, 1125
BfuI GTATCC 2 cut(s) 106, 1284
BlnI CCTAGG 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 207, 432
BmsI GCATC 3 cut(s) 472, 667, 715
BmtI GCTAGC 1 cut(s) 272
BplI GAGNNNNNCTC 2 cut(s) 238, 270
Bpu10I CCTNAGC 1 cut(s) 1237
BpuEI CTTGAG 4 cut(s) 273, 315, 383, 1115
BsaAI YACGTR 1 cut(s) 76
BsaBI GATNNNNATC 2 cut(s) 105, 932
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 131, 201, 833, 882
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 1 cut(s) 1181
Bse8I GATNNNNATC 2 cut(s) 105, 932
BseDI CCNNGG 4 cut(s) 131, 201, 833, 882
BseGI GGATG 4 cut(s) 661, 682, 730, 854
BseJI GATNNNNATC 2 cut(s) 105, 932
BseLI CCNNNNNNNGG 1 cut(s) 1181
BseRI GAGGAG 3 cut(s) 686, 734, 837
BseSI GKGCMC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 1071
BshFI GGCC 3 cut(s) 57, 250, 1174
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 908
BslFI GGGAC 1 cut(s) 1218
BslI CCNNNNNNNGG 1 cut(s) 1181
BsmAI GTCTC 5 cut(s) 80, 191, 359, 561, 1217
BsmFI GGGAC 1 cut(s) 1218
BsnI GGCC 3 cut(s) 57, 250, 1174
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 210, 908
Bsp1407I TGTACA 1 cut(s) 517
Bsp143I GATC 3 cut(s) 100, 933, 970
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 2 cut(s) 680, 728
BspANI GGCC 3 cut(s) 57, 250, 1174
BspHI TCATGA 2 cut(s) 223, 871
BspLI GGNNCC 2 cut(s) 207, 432
BspOI GCTAGC 1 cut(s) 272
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 822
BspT107I GGYRCC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 191
BsrGI TGTACA 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 131, 201, 833, 882
BssMI GATC 3 cut(s) 100, 933, 970
BssT1I CCWWGG 4 cut(s) 131, 201, 833, 882
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 4 cut(s) 441, 645, 822, 1139
BstAUI TGTACA 1 cut(s) 517
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 6 cut(s) 171, 231, 270, 282, 303, 324
BstDEI CTNAG 3 cut(s) 606, 1155, 1237
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 4 cut(s) 661, 682, 730, 854
BstKTI GATC 3 cut(s) 103, 936, 973
BstMAI GTCTC 5 cut(s) 80, 191, 359, 561, 1217
BstMBI GATC 3 cut(s) 100, 933, 970
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 458
BstSLI GKGCMC 1 cut(s) 210
BsuI GTATCC 2 cut(s) 106, 1284
BsuRI GGCC 3 cut(s) 57, 250, 1174
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 4 cut(s) 661, 682, 730, 854
Cac8I GCNNGC 6 cut(s) 171, 231, 270, 282, 303, 324
CciI TCATGA 2 cut(s) 223, 871
CseI GACGC 1 cut(s) 294
Csp6I GTAC 5 cut(s) 73, 452, 518, 941, 1262
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 5 cut(s) 202, 224, 407, 455, 872
CviQI GTAC 5 cut(s) 73, 452, 518, 941, 1262
DdeI CTNAG 3 cut(s) 606, 1155, 1237
DpnI GATC 3 cut(s) 102, 935, 972
DpnII GATC 3 cut(s) 100, 933, 970
EaeI YGGCCR 2 cut(s) 55, 1172
Eam1104I CTCTTC 4 cut(s) 441, 645, 822, 1139
EarI CTCTTC 4 cut(s) 441, 645, 822, 1139
Eco130I CCWWGG 4 cut(s) 131, 201, 833, 882
Eco147I AGGCCT 1 cut(s) 250
Eco31I GGTCTC 1 cut(s) 191
EcoT14I CCWWGG 4 cut(s) 131, 201, 833, 882
ErhI CCWWGG 4 cut(s) 131, 201, 833, 882
FaeI CATG 5 cut(s) 205, 227, 410, 458, 875
FalI AAGNNNNNCTT 4 cut(s) 324, 356, 1151, 1183
FaqI GGGAC 1 cut(s) 1218
FatI CATG 5 cut(s) 201, 223, 406, 454, 871
FauNDI CATATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 970
FokI GGATG 4 cut(s) 668, 689, 737, 841
FspBI CTAG 7 cut(s) 132, 158, 243, 269, 369, 666, 1125
HaeIII GGCC 3 cut(s) 57, 250, 1174
HgaI GACGC 1 cut(s) 294
Hin1II CATG 5 cut(s) 205, 227, 410, 458, 875
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HindIII AAGCTT 3 cut(s) 120, 282, 324
HinfI GANTC 7 cut(s) 239, 410, 476, 610, 641, 793, 1231
HphI GGTGA 4 cut(s) 385, 574, 827, 1003
Hpy166II GTNNAC 2 cut(s) 31, 1013
Hpy188I TCNGA 3 cut(s) 100, 580, 646
Hpy188III TCNNGA 8 cut(s) 62, 83, 224, 257, 332, 441, 467, 872
Hpy8I GTNNAC 2 cut(s) 31, 1013
HpyAV CCTTC 6 cut(s) 143, 261, 400, 807, 1093, 1099
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 3 cut(s) 606, 1155, 1237
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 5 cut(s) 205, 227, 410, 458, 875
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 3 cut(s) 100, 933, 970
LguI GCTCTTC 1 cut(s) 822
LmnI GCTCC 2 cut(s) 430, 730
LweI GCATC 3 cut(s) 472, 667, 715
MaeI CTAG 7 cut(s) 132, 158, 243, 269, 369, 666, 1125
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 306
MalI GATC 3 cut(s) 102, 935, 972
MboI GATC 3 cut(s) 100, 933, 970
MfeI CAATTG 5 cut(s) 164, 275, 296, 317, 1179
MhlI GDGCHC 2 cut(s) 210, 908
MlsI TGGCCA 2 cut(s) 57, 1174
MluNI TGGCCA 2 cut(s) 57, 1174
MlyI GAGTC 5 cut(s) 248, 485, 604, 802, 1240
Mox20I TGGCCA 2 cut(s) 57, 1174
MscI TGGCCA 2 cut(s) 57, 1174
MseI TTAA 5 cut(s) 47, 420, 918, 965, 1118
MslI CAYNNNNRTG 1 cut(s) 351
Msp20I TGGCCA 2 cut(s) 57, 1174
MunI CAATTG 5 cut(s) 164, 275, 296, 317, 1179
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 235
NdeII GATC 3 cut(s) 100, 933, 970
NheI GCTAGC 1 cut(s) 268
NlaIII CATG 5 cut(s) 205, 227, 410, 458, 875
NlaIV GGNNCC 2 cut(s) 207, 432
NmuCI GTSAC 1 cut(s) 306
NspI RCATGY 1 cut(s) 458
PagI TCATGA 2 cut(s) 223, 871
PceI AGGCCT 1 cut(s) 250
PciI ACATGT 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 822
PfeI GAWTC 2 cut(s) 410, 641
PflMI CCANNNNNTGG 1 cut(s) 1181
PleI GAGTC 5 cut(s) 247, 484, 604, 801, 1239
PpsI GAGTC 5 cut(s) 247, 484, 604, 801, 1239
Ppu21I YACGTR 1 cut(s) 76
PscI ACATGT 1 cut(s) 454
PshBI ATTAAT 1 cut(s) 1118
PspN4I GGNNCC 2 cut(s) 207, 432
RsaI GTAC 5 cut(s) 74, 453, 519, 942, 1263
RsaNI GTAC 5 cut(s) 73, 452, 518, 941, 1262
RseI CAYNNNNRTG 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 822
SaqAI TTAA 5 cut(s) 47, 420, 918, 965, 1118
Sau3AI GATC 3 cut(s) 100, 933, 970
SchI GAGTC 5 cut(s) 248, 485, 604, 802, 1240
SduI GDGCHC 2 cut(s) 210, 908
SfaNI GCATC 3 cut(s) 472, 667, 715
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 5 cut(s) 288, 330, 362, 1094, 1265
SmoI CTYRAG 5 cut(s) 288, 330, 362, 1094, 1265
SseBI AGGCCT 1 cut(s) 250
SsiI CCGC 2 cut(s) 680, 728
SspI AATATT 1 cut(s) 596
SspMI CTAG 7 cut(s) 132, 158, 243, 269, 369, 666, 1125
StuI AGGCCT 1 cut(s) 250
StyI CCWWGG 4 cut(s) 131, 201, 833, 882
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 78
TatI WGTACW 1 cut(s) 517
TfiI GAWTC 2 cut(s) 410, 641
Tru1I TTAA 5 cut(s) 47, 420, 918, 965, 1118
Tru9I TTAA 5 cut(s) 47, 420, 918, 965, 1118
TseFI GTSAC 1 cut(s) 306
Tsp45I GTSAC 1 cut(s) 306
TspDTI ATGAA 3 cut(s) 423, 555, 703
Van91I CCANNNNNTGG 1 cut(s) 1181
VspI ATTAAT 1 cut(s) 1118
XapI RAATTY 2 cut(s) 140, 683
XceI RCATGY 1 cut(s) 458
XmaJI CCTAGG 1 cut(s) 131
XspI CTAG 7 cut(s) 132, 158, 243, 269, 369, 666, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.