RchiOBHm_Chr3g0457891

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000195
Physical Location & Seq
Reverse (-)
6811723 .. 6812831
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42461

Sequence Viewer

Length: 897 bp
ATGCTTATACATTCTAATGAGCAACTTAAGGCAAGTCTTGCACAAGAGCCACCCTTCACCATTTATGAGCATGAATCTTTCTTTGATCAAGTGGAGCCTATTTCAAGAGAAGAAGTGTATATCGAGCATCTTGAGCAAGAATCCTTTATGCAAGTTGAAAATGATGATAATGATGTTGATGTACAAGAAATTGAGGTTGGTCATGAAAGTTTCAATGCAAGTGGGGTGAGAGACTACACTTCGGAGGAACCGGTGCAATATTGGAAATCTAATCTTCACAATGAAGAGGAGGTATATGAAGTTGATTCCGAAGAAGAGGATAGCTTGTCTAGTAAGGAAGATGTGGAGCTTGAAGACTTACACCATGATCCCTTATTCATTGAGGTTGATATTCCCATGGGGGATGAGAGTCATTCAATACCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTCTCATCCCATATCCACGGAAATCCATCATGAGCTTCCTAAGGTGGATTGTAGAATATTGAGCACTTACACTCTTAATGAGAGGATTGAGATCAAGGTACTTTTACCTCTCAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATGAAGCACTTGCACTCACCCTTTCCCATCACTCTCAAGAGCTTCAACCACCTATTGTTCCTATGAGCATCATTTCTAATCCACTTGAGAAGGAGAAGGCAATGTTGGCTCCTAGAAGAAAAATTGAGAAGAGGGGGAAGACTAAAAAGCTACACTTTTGGCCACCAATTGGAGTATTCTTAGGTAGTTCTTGGTCTTGTCTCTATGACACATCGATGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

34.43

Weight (kDa)

4.52

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 584, 794
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 785
AfaI GTAC 3 cut(s) 183, 558, 876
AfiI CCNNNNNNNGG 2 cut(s) 584, 794
AflII CTTAAG 1 cut(s) 26
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 7 cut(s) 105, 158, 214, 353, 417, 443, 671
AjuI GAANNNNNNNTTGG 4 cut(s) 180, 212, 713, 745
AluBI AGCT 5 cut(s) 324, 349, 493, 667, 775
AluI AGCT 5 cut(s) 324, 349, 493, 667, 775
Alw21I GWGCWC 1 cut(s) 524
Alw26I GTCTC 2 cut(s) 225, 830
AlwI GGATC 1 cut(s) 362
AoxI GGCC 1 cut(s) 785
AsiGI ACCGGT 1 cut(s) 250
AsuHPI GGTGA 4 cut(s) 49, 238, 619, 634
AxyI CCTNAGG 1 cut(s) 498
BalI TGGCCA 1 cut(s) 787
BbsI GAAGAC 2 cut(s) 360, 770
Bbv12I GWGCWC 1 cut(s) 524
BccI CCATC 3 cut(s) 492, 604, 660
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 225, 830
BfaI CTAG 2 cut(s) 330, 738
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 897
BmiI GGNNCC 3 cut(s) 96, 249, 735
BmsI GCATC 2 cut(s) 136, 702
BpiI GAAGAC 2 cut(s) 360, 770
Bpu10I CCTNAGC 1 cut(s) 850
BpuEI CTTGAG 3 cut(s) 152, 645, 731
Bsa29I ATCGAT 1 cut(s) 839
BsaBI GATNNNNATC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 396, 449, 474
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 584, 794
Bse118I RCCGGY 1 cut(s) 250
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 1 cut(s) 732
Bse8I GATNNNNATC 1 cut(s) 548
BseCI ATCGAT 1 cut(s) 839
BseDI CCNNGG 3 cut(s) 396, 449, 474
BseGI GGATG 2 cut(s) 409, 463
BseJI GATNNNNATC 1 cut(s) 548
BseLI CCNNNNNNNGG 2 cut(s) 584, 794
BseMI GCAATG 1 cut(s) 732
BseRI GAGGAG 1 cut(s) 302
BshFI GGCC 1 cut(s) 787
BshTI ACCGGT 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 839
BsiHKAI GWGCWC 1 cut(s) 524
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 831
BslI CCNNNNNNNGG 2 cut(s) 584, 794
BsmAI GTCTC 2 cut(s) 225, 830
BsmFI GGGAC 1 cut(s) 831
BsnI GGCC 1 cut(s) 787
Bsp1286I GDGCHC 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 181
Bsp143I GATC 3 cut(s) 85, 367, 549
Bsp19I CCATGG 1 cut(s) 396
BspANI GGCC 1 cut(s) 787
BspDI ATCGAT 1 cut(s) 839
BspHI TCATGA 2 cut(s) 202, 487
BspLI GGNNCC 3 cut(s) 96, 249, 735
BspPI GGATC 1 cut(s) 362
BspQI GCTCTTC 1 cut(s) 438
BspTI CTTAAG 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 732
BsrFI RCCGGY 1 cut(s) 250
BsrGI TGTACA 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 396, 449, 474
BssMI GATC 3 cut(s) 85, 367, 549
BssT1I CCWWGG 2 cut(s) 396, 449
Bst6I CTCTTC 4 cut(s) 279, 309, 438, 749
BstAFI CTTAAG 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 38
BstAUI TGTACA 1 cut(s) 181
BstDEI CTNAG 3 cut(s) 498, 805, 850
BstDSI CCRYGG 2 cut(s) 396, 474
BstF5I GGATG 2 cut(s) 409, 463
BstKTI GATC 3 cut(s) 88, 370, 552
BstMAI GTCTC 2 cut(s) 225, 830
BstMBI GATC 3 cut(s) 85, 367, 549
BstMWI GCNNNNNNNGC 3 cut(s) 38, 133, 731
BstV2I GAAGAC 2 cut(s) 360, 770
Bsu15I ATCGAT 1 cut(s) 839
Bsu36I CCTNAGG 1 cut(s) 498
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 1 cut(s) 787
BsuTUI ATCGAT 1 cut(s) 839
BtgI CCRYGG 2 cut(s) 396, 474
BtsCI GGATG 2 cut(s) 409, 463
CciI TCATGA 2 cut(s) 202, 487
Cfr10I RCCGGY 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 839
Csp6I GTAC 3 cut(s) 182, 557, 875
CspAI ACCGGT 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviAII CATG 5 cut(s) 71, 203, 365, 397, 488
CviQI GTAC 3 cut(s) 182, 557, 875
DdeI CTNAG 3 cut(s) 498, 805, 850
DpnI GATC 3 cut(s) 87, 369, 551
DpnII GATC 3 cut(s) 85, 367, 549
EaeI YGGCCR 1 cut(s) 785
Eam1104I CTCTTC 4 cut(s) 279, 309, 438, 749
EarI CTCTTC 4 cut(s) 279, 309, 438, 749
Eco130I CCWWGG 2 cut(s) 396, 449
Eco81I CCTNAGG 1 cut(s) 498
EcoT14I CCWWGG 2 cut(s) 396, 449
ErhI CCWWGG 2 cut(s) 396, 449
FaeI CATG 5 cut(s) 74, 206, 368, 400, 491
FalI AAGNNNNNCTT 2 cut(s) 764, 796
FaqI GGGAC 1 cut(s) 831
FatI CATG 5 cut(s) 70, 202, 364, 396, 487
FbaI TGATCA 1 cut(s) 85
FokI GGATG 2 cut(s) 416, 450
FspBI CTAG 2 cut(s) 330, 738
HaeIII GGCC 1 cut(s) 787
HapII CCGG 1 cut(s) 251
Hin1II CATG 5 cut(s) 74, 206, 368, 400, 491
HinfI GANTC 5 cut(s) 74, 140, 305, 409, 844
HpaII CCGG 1 cut(s) 251
HphI GGTGA 4 cut(s) 49, 238, 619, 634
Hpy188I TCNGA 2 cut(s) 244, 310
Hpy188III TCNNGA 5 cut(s) 105, 131, 203, 488, 662
HpyAV CCTTC 3 cut(s) 64, 709, 715
HpyCH4V TGCA 5 cut(s) 41, 151, 218, 256, 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 133, 731
HpyF3I CTNAG 3 cut(s) 498, 805, 850
Hsp92II CATG 5 cut(s) 74, 206, 368, 400, 491
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 3 cut(s) 85, 367, 549
LguI GCTCTTC 1 cut(s) 438
LmnI GCTCC 3 cut(s) 94, 346, 739
LpnPI CCDG 1 cut(s) 264
LweI GCATC 2 cut(s) 136, 702
MaeI CTAG 2 cut(s) 330, 738
MalI GATC 3 cut(s) 87, 369, 551
MboI GATC 3 cut(s) 85, 367, 549
MfeI CAATTG 1 cut(s) 792
MhlI GDGCHC 1 cut(s) 524
MlsI TGGCCA 1 cut(s) 787
MluCI AATT 4 cut(s) 189, 438, 747, 792
MluNI TGGCCA 1 cut(s) 787
MlyI GAGTC 2 cut(s) 418, 853
Mox20I TGGCCA 1 cut(s) 787
MscI TGGCCA 1 cut(s) 787
MseI TTAA 3 cut(s) 27, 534, 581
MslI CAYNNNNRTG 2 cut(s) 15, 839
Msp20I TGGCCA 1 cut(s) 787
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 792
MwoI GCNNNNNNNGC 3 cut(s) 38, 133, 731
NcoI CCATGG 1 cut(s) 396
NdeII GATC 3 cut(s) 85, 367, 549
NlaIII CATG 5 cut(s) 74, 206, 368, 400, 491
NlaIV GGNNCC 3 cut(s) 96, 249, 735
PagI TCATGA 2 cut(s) 202, 487
PciSI GCTCTTC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 74, 140, 305
PflMI CCANNNNNTGG 2 cut(s) 584, 794
PinAI ACCGGT 1 cut(s) 250
PleI GAGTC 2 cut(s) 417, 852
PpsI GAGTC 2 cut(s) 417, 852
PspN4I GGNNCC 3 cut(s) 96, 249, 735
RsaI GTAC 3 cut(s) 183, 558, 876
RsaNI GTAC 3 cut(s) 182, 557, 875
RseI CAYNNNNRTG 2 cut(s) 15, 839
SapI GCTCTTC 1 cut(s) 438
SaqAI TTAA 3 cut(s) 27, 534, 581
Sau3AI GATC 3 cut(s) 85, 367, 549
SchI GAGTC 2 cut(s) 418, 853
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 2 cut(s) 136, 702
SmiMI CAYNNNNRTG 2 cut(s) 15, 839
SmlI CTYRAG 5 cut(s) 26, 131, 660, 710, 878
SmoI CTYRAG 5 cut(s) 26, 131, 660, 710, 878
Sse9I AATT 4 cut(s) 189, 438, 747, 792
SspI AATATT 2 cut(s) 260, 516
SspMI CTAG 2 cut(s) 330, 738
StyI CCWWGG 2 cut(s) 396, 449
TaqI TCGA 2 cut(s) 123, 839
TasI AATT 4 cut(s) 189, 438, 747, 792
TatI WGTACW 1 cut(s) 181
TfiI GAWTC 3 cut(s) 74, 140, 305
Tru1I TTAA 3 cut(s) 27, 534, 581
Tru9I TTAA 3 cut(s) 27, 534, 581
TspDTI ATGAA 7 cut(s) 87, 219, 297, 312, 367, 447, 642
TspGWI ACGGA 1 cut(s) 491
Van91I CCANNNNNTGG 2 cut(s) 584, 794
Vha464I CTTAAG 1 cut(s) 26
XspI CTAG 2 cut(s) 330, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.