Rroxscaffold_1G00001960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000195
Physical Location & Seq
Forward (+)
2380021 .. 2383155
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001960.1

Sequence Viewer

Length: 1305 bp
ATGGTGATTTACACCCGTTGCGTGATTGCGCGGGCAGGTCGCTTAGTGCTTATTTCTTATCATATTGAGCTATGGAACAATGGAGATATGGATGGGAAGATCCGAGAGGATATGAGCAAGAATGTTTCTATGGTGGAGGTCATCATGAGTGGAATTCTCATGCGGTGGGTTCTATGTCCTCTTGCAATGAAATTTTGTGAGTACACGTATCAAGAGACATTTGCACCCGATGTATATCCACAAGATGAAGCTTATGAGCCTAGTAAGGAATTCGTTGAAGGACTACTAGCTCAATTGCAAGCCTCCCGAGTTATTTTACAAGCCTCTCAAGTTAGGATTTCACAAGAGACTATGGTCCCCGAAGCATATCCTCATGAGCAAGAATTACTAGCTCAATTGCAAGCGTTCCAAGCTAGATTGCAAGCTTCTCAAGAAATACTTATACATACCAATGAGCAACTTGAAGCAAGTTTTGCACAAGAGCCACCCTTCGCCATTTATGAGCATGAATCTTTCTTTAACCAAGTGGAGCCTATTCCAAGAGAAGAAGTACATGTCAAACATCTTGAGCAAGAGTCCTTTACTCAAGTTGAAGATGATGATAGTGATATTGATGTACAAGAAAGTGAGCTTGGTTATGAAAGTTCCAATGCAAGTGAGGTGAGAGATTACACTTCGGAGGAATTGATGCAATATTGGAAATCTAAGCTTCCAAATGGAGGGGAGATATTTGACGATGATTCCGAAGAAGAGGATGTCTTGTCTAGTGAGGAGGATGCGGAATTTGAAGTTGATATTCCCATGGAGGAAGAGAGTCCTTCAATACTTTGTGATGGTGAAGAAATTGAAGAGGCAAGGACTTTCTCCTCTCCCACATCCATGGAGATCCATCATGAGCTTCCCAAGGTGGAGGGTAGGACATTGAGTACTTATGTTCTTTATGAGAATATTGAGATTAAGGTATTTTTACCTCTCAATCCACCATTAAGTGGTCAATGTTTCTATAATGAGGTGATGGATTGGAAAGGAAATGGAGCATTTGCACTCACCCTTTCCCATCACTCTCAAGAGCTTCTACCACCTATTGTTCCTATGAGCATCATTTCTACACCACTTGAGAAGGATAAGGCAAGGAGATTGATTCATAGAAGAAAAATCGAGAAGAAGAGGAAGATTAAGAAGCTACACTTTTGCTCACCAATTGGAATATTCATAGTTAGCTCTTGGTCTTGCCTCTATGATACGTCAAGGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

434

Amino Acids

49.92

Weight (kDa)

4.61

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 989
AccII CGCG 1 cut(s) 31
AciI CCGC 3 cut(s) 31, 163, 779
AclWI GGATC 2 cut(s) 94, 880
AcsI RAATTY 4 cut(s) 153, 191, 269, 782
AfaI GTAC 5 cut(s) 203, 552, 618, 928, 1284
AfiI CCNNNNNNNGG 2 cut(s) 719, 989
AflIII ACRYGT 2 cut(s) 204, 553
AgsI TTSAA 6 cut(s) 278, 464, 593, 788, 822, 848
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
Alw26I GTCTC 2 cut(s) 209, 341
AlwI GGATC 2 cut(s) 94, 880
Ama87I CYCGRG 1 cut(s) 306
ApoI RAATTY 4 cut(s) 153, 191, 269, 782
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 6 cut(s) 16, 673, 848, 1024, 1039, 1188
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 355
BccI CCATC 5 cut(s) 86, 827, 897, 1009, 1065
BciVI GTATCC 1 cut(s) 1305
BcoDI GTCTC 2 cut(s) 209, 341
BfaI CTAG 5 cut(s) 261, 287, 389, 414, 765
BfuAI ACCTGC 1 cut(s) 26
BfuI GTATCC 1 cut(s) 1305
BmcAI AGTACT 1 cut(s) 928
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 357, 531
BmsI GCATC 3 cut(s) 678, 766, 1107
BoxI GACNNNNGTC 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 1258
BpuEI CTTGAG 6 cut(s) 312, 414, 570, 587, 1050, 1136
BsaAI YACGTR 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 801, 879, 903
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 989
Bse3DI GCAATG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 801, 879, 903
BseGI GGATG 4 cut(s) 97, 760, 781, 875
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 719, 989
BseMI GCAATG 1 cut(s) 192
BseRI GAGGAG 2 cut(s) 785, 856
Bsh1236I CGCG 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 306
BslFI GGGAC 2 cut(s) 341, 1239
BslI CCNNNNNNNGG 2 cut(s) 719, 989
BsmAI GTCTC 2 cut(s) 209, 341
BsmFI GGGAC 2 cut(s) 341, 1239
BsoBI CYCGRG 1 cut(s) 306
Bsp1407I TGTACA 1 cut(s) 616
Bsp143I GATC 2 cut(s) 99, 885
Bsp19I CCATGG 2 cut(s) 801, 879
BspACI CCGC 3 cut(s) 31, 163, 779
BspFNI CGCG 1 cut(s) 31
BspHI TCATGA 3 cut(s) 144, 373, 892
BspLI GGNNCC 2 cut(s) 357, 531
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 2 cut(s) 94, 880
BsrDI GCAATG 1 cut(s) 192
BsrGI TGTACA 1 cut(s) 616
BssECI CCNNGG 3 cut(s) 801, 879, 903
BssMI GATC 2 cut(s) 99, 885
BssT1I CCWWGG 3 cut(s) 801, 879, 903
Bst6I CTCTTC 4 cut(s) 744, 804, 843, 1160
BstAPI GCANNNNNTGC 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 616
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 33, 300, 402, 423
BstDEI CTNAG 3 cut(s) 43, 705, 1258
BstDSI CCRYGG 2 cut(s) 801, 879
BstF5I GGATG 4 cut(s) 97, 760, 781, 875
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 102, 888
BstMAI GTCTC 2 cut(s) 209, 341
BstMBI GATC 2 cut(s) 99, 885
BstMWI GCNNNNNNNGC 2 cut(s) 410, 473
BstNSI RCATGY 1 cut(s) 557
BstPAI GACNNNNGTC 1 cut(s) 353
BstUI CGCG 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 99, 885
BstXI CCANNNNNNTGG 1 cut(s) 880
BstYI RGATCY 2 cut(s) 99, 885
BsuI GTATCC 1 cut(s) 1305
BtgI CCRYGG 2 cut(s) 801, 879
BtsCI GGATG 4 cut(s) 97, 760, 781, 875
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 4 cut(s) 33, 300, 402, 423
CciI TCATGA 3 cut(s) 144, 373, 892
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 355
Csp6I GTAC 5 cut(s) 202, 551, 617, 927, 1283
CviAII CATG 8 cut(s) 145, 160, 374, 506, 554, 802, 880, 893
CviQI GTAC 5 cut(s) 202, 551, 617, 927, 1283
DdeI CTNAG 3 cut(s) 43, 705, 1258
DpnI GATC 2 cut(s) 101, 887
DpnII GATC 2 cut(s) 99, 885
Eam1104I CTCTTC 4 cut(s) 744, 804, 843, 1160
EarI CTCTTC 4 cut(s) 744, 804, 843, 1160
Eco130I CCWWGG 3 cut(s) 801, 879, 903
Eco47I GGWCC 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 306
EcoRI GAATTC 2 cut(s) 153, 269
EcoT14I CCWWGG 3 cut(s) 801, 879, 903
ErhI CCWWGG 3 cut(s) 801, 879, 903
FaeI CATG 8 cut(s) 148, 163, 377, 509, 557, 805, 883, 896
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 1172, 1204
FaqI GGGAC 2 cut(s) 341, 1239
FatI CATG 8 cut(s) 144, 159, 373, 505, 553, 801, 879, 892
FauI CCCGC 1 cut(s) 24
FokI GGATG 4 cut(s) 104, 767, 788, 862
FspBI CTAG 5 cut(s) 261, 287, 389, 414, 765
GlaI GCGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 31
Hin1II CATG 8 cut(s) 148, 163, 377, 509, 557, 805, 883, 896
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 3 cut(s) 249, 423, 707
HinfI GANTC 6 cut(s) 509, 575, 740, 814, 1141, 1252
HphI GGTGA 6 cut(s) 16, 673, 848, 1024, 1039, 1188
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 3 cut(s) 104, 679, 745
Hpy188III TCNNGA 9 cut(s) 145, 212, 306, 374, 431, 566, 893, 1067, 1159
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 4 cut(s) 272, 499, 828, 1114
HpyCH4IV ACGT 2 cut(s) 206, 1244
HpyCH4V TGCA 9 cut(s) 185, 224, 298, 400, 421, 476, 653, 691, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 473
HpyF3I CTNAG 3 cut(s) 43, 705, 1258
HpySE526I ACGT 2 cut(s) 206, 1244
Hsp92II CATG 8 cut(s) 148, 163, 377, 509, 557, 805, 883, 896
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 2 cut(s) 99, 885
LmnI GCTCC 2 cut(s) 529, 1034
LpnPI CCDG 1 cut(s) 21
LweI GCATC 3 cut(s) 678, 766, 1107
MaeI CTAG 5 cut(s) 261, 287, 389, 414, 765
MaeII ACGT 2 cut(s) 206, 1244
MalI GATC 2 cut(s) 101, 887
MboI GATC 2 cut(s) 99, 885
MfeI CAATTG 3 cut(s) 293, 395, 1200
MflI RGATCY 2 cut(s) 99, 885
MlyI GAGTC 3 cut(s) 584, 823, 1261
MseI TTAA 4 cut(s) 519, 957, 986, 1176
MslI CAYNNNNRTG 2 cut(s) 450, 878
MunI CAATTG 3 cut(s) 293, 395, 1200
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 410, 473
NcoI CCATGG 2 cut(s) 801, 879
NdeII GATC 2 cut(s) 99, 885
NlaIII CATG 8 cut(s) 148, 163, 377, 509, 557, 805, 883, 896
NlaIV GGNNCC 2 cut(s) 357, 531
NspI RCATGY 1 cut(s) 557
PagI TCATGA 3 cut(s) 144, 373, 892
PciI ACATGT 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 741
PfeI GAWTC 3 cut(s) 509, 740, 1141
PflMI CCANNNNNTGG 1 cut(s) 989
PleI GAGTC 3 cut(s) 583, 822, 1260
PpsI GAGTC 3 cut(s) 583, 822, 1260
Ppu21I YACGTR 1 cut(s) 207
PscI ACATGT 1 cut(s) 553
PshAI GACNNNNGTC 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 357, 531
PspPI GGNCC 1 cut(s) 355
PsuI RGATCY 2 cut(s) 99, 885
RsaI GTAC 5 cut(s) 203, 552, 618, 928, 1284
RsaNI GTAC 5 cut(s) 202, 551, 617, 927, 1283
RseI CAYNNNNRTG 2 cut(s) 450, 878
SaqAI TTAA 4 cut(s) 519, 957, 986, 1176
Sau3AI GATC 2 cut(s) 99, 885
Sau96I GGNCC 1 cut(s) 355
ScaI AGTACT 1 cut(s) 928
SchI GAGTC 3 cut(s) 584, 823, 1261
SfaNI GCATC 3 cut(s) 678, 766, 1107
SinI GGWCC 1 cut(s) 355
SmiMI CAYNNNNRTG 2 cut(s) 450, 878
SmlI CTYRAG 7 cut(s) 327, 429, 566, 585, 1065, 1115, 1286
SmoI CTYRAG 7 cut(s) 327, 429, 566, 585, 1065, 1115, 1286
SsiI CCGC 3 cut(s) 31, 163, 779
SspI AATATT 3 cut(s) 695, 949, 1209
SspMI CTAG 5 cut(s) 261, 287, 389, 414, 765
StyI CCWWGG 3 cut(s) 801, 879, 903
TaiI ACGT 2 cut(s) 209, 1247
TaqI TCGA 1 cut(s) 1158
TatI WGTACW 4 cut(s) 201, 550, 616, 926
TfiI GAWTC 3 cut(s) 509, 740, 1141
Tru1I TTAA 4 cut(s) 519, 957, 986, 1176
Tru9I TTAA 4 cut(s) 519, 957, 986, 1176
TspDTI ATGAA 6 cut(s) 203, 261, 522, 654, 1133, 1201
Van91I CCANNNNNTGG 1 cut(s) 989
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 4 cut(s) 153, 191, 269, 782
XceI RCATGY 1 cut(s) 557
XspI CTAG 5 cut(s) 261, 287, 389, 414, 765
ZrmI AGTACT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.