Rroxscaffold_5G00373500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000195
Physical Location & Seq
Reverse (-)
54700512 .. 54701890
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373500.1

Sequence Viewer

Length: 1071 bp
ATGTCAAAACCGAACCTTCGACGCCAATTTGGTGGTGGAGACCGCCGGAATCGCCGGAAATCGACAAAACTCCCGTTCGGCTACGGTAACCTTCGTGGCTCAATTCCGAGCTCCACCGGCCGAGCCACCGCAAAGCACCACCACGGGCGTGACCGGGGTGAAGAGGCGAGCCGGTCGATGCCCGAATTCCATCATGGGGTGGCCGGAGGAGGAAGAAATCGGAGGGAGAAGAAACCGGCCGAAGAAGAGAAAGGATCGGGGGAGAGGAGAGAGAAAAACCGGTTCGGGACGTTACAATCTAAGCTTCCAAATGGAGGGGAGATATTTGAAGATGATTCCGATGAAGAGGATGTCTTTTCTAGTGAGGAGGATTCGGAGTTTGAAGTGATGCACTACAATCCCTTATTCATTGAGGCCGTACTTGAACATGATTCCGATGAGGAGGATGACTTATATAGTAAGAGGAATGCGGAGTTTGAAGTCATACACCATAATCCATTGTTCATCGAGGAGGATGCGGAGTTTGAAGTCATAAACCATAATCCCTTATTCATTGAGGTCGATATTCCCATGGAGGAAGAGAGTCCTTCAATACCTTGTGATGATGAAGAAATTGAAGAGCCAAGGACTTTCTTGCCTCCCATATCCATGGAGATCCATCATGAGCTTCCTAAGGTGGATTGTAGAATATTGAGCACTTATGTTCTTAATGAGAGGATTCGGATCAAGGTACTTTTACCTCCTAATCCACCATTAAGTGGTCAATGTTTCTACAATGAGGTGATGGATTGGAAAGGAAATGGAGCACTTGCACTCACCCTTTCCCATCACTCTCAAGAGCTTCTACCACCTATTGTTCCTATGAGCATCATTTCCACGCCACTTGAGAAGGAGAAGGCAAGGATAGCTCCTAGAAGAAAAATTGAGAAGAAGAGGAAGATTAAGAAGCTTTATTTTCGAGAACCAATTAGAACAGTCATGCTTAGCTCTTGGTCTTGCCTCCATGATACGTCAAGGAGTCCCTTAGCCCCAAACAATAGGGTGGTCGTACTTGAGAAGTATCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

40.91

Weight (kDa)

5.82

Isoelectric Point (pI)

73.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000195)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g25780 FvH4_6g25920
rosa_chinensis RchiOBHm_Chr1g0366971 RchiOBHm_Chr1g0372841 RchiOBHm_Chr2g0146841 RchiOBHm_Chr2g0154821 RchiOBHm_Chr2g0159611 RchiOBHm_Chr3g0452071 RchiOBHm_Chr3g0453731 RchiOBHm_Chr3g0457891 RchiOBHm_Chr3g0471041 RchiOBHm_Chr3g0473741 RchiOBHm_Chr4g0427761 RchiOBHm_Chr5g0041301 RchiOBHm_Chr5g0076511 RchiOBHm_Chr6g0281431 RchiOBHm_Chr7g0180511
rosa_multiflora Rmu_sc0000082.1_g000052 Rmu_sc0000125.1_g000058 Rmu_sc0000147.1_g000108 Rmu_sc0000210.1_g000011 Rmu_sc0000229.1_g000006 Rmu_sc0000245.1_g000013 Rmu_sc0000897.1_g000016 Rmu_sc0001059.1_g000005 Rmu_sc0001336.1_g000059 Rmu_sc0001464.1_g000025 Rmu_sc0001630.1_g000013 Rmu_sc0001790.1_g000012 Rmu_sc0001939.1_g000003 Rmu_sc0002132.1_g000013 Rmu_sc0002235.1_g000008 Rmu_sc0002235.1_g000022 Rmu_sc0002548.1_g000030 Rmu_sc0002564.1_g000018 Rmu_sc0002652.1_g000001 Rmu_sc0002759.1_g000007 Rmu_sc0002759.1_g000011 Rmu_sc0002799.1_g000012 Rmu_sc0002858.1_g000033 Rmu_sc0002882.1_g000041 Rmu_sc0003032.1_g000030 Rmu_sc0003033.1_g000041 Rmu_sc0003044.1_g000038 Rmu_sc0003072.1_g000004 Rmu_sc0003264.1_g000025 Rmu_sc0003304.1_g000034 Rmu_sc0003416.1_g000002 Rmu_sc0003613.1_g000010 Rmu_sc0003762.1_g000009 Rmu_sc0003776.1_g000028 Rmu_sc0003859.1_g000025 Rmu_sc0004553.1_g000014 Rmu_sc0004866.1_g000002 Rmu_sc0004941.1_g000047 Rmu_sc0005777.1_g000002 Rmu_sc0005958.1_g000001 Rmu_sc0006573.1_g000001 Rmu_sc0006912.1_g000005 Rmu_sc0006968.1_g000002 Rmu_sc0006986.1_g000020 Rmu_sc0007258.1_g000016 Rmu_sc0007803.1_g000001 Rmu_sc0008479.1_g000003 Rmu_sc0008506.1_g000012 Rmu_sc0009199.1_g000005 Rmu_sc0009431.1_g000008 Rmu_sc0009611.1_g000005 Rmu_sc0014287.1_g000001 Rmu_sc0014768.1_g000001 Rmu_sc0020577.1_g000001 Rmu_sc0028131.1_g000001 Rmu_sc0029371.1_g000001 Rmu_sc0034219.1_g000001 Rmu_ssc0000252.1_g000026 Rmu_ssc0000252.1_g000027 Rmu_ssc0000398.1_g000023 Rmu_ssc0000482.1_g000020
rosa_roxburghii Rroxscaffold_158G00443700 Rroxscaffold_1G00001910 Rroxscaffold_1G00001960 Rroxscaffold_1G00002400 Rroxscaffold_1G00015110 Rroxscaffold_1G00015140 Rroxscaffold_1G00028870 Rroxscaffold_1G00028930 Rroxscaffold_1G00031320 Rroxscaffold_1G00031990 Rroxscaffold_1G00060310 Rroxscaffold_1G00063330 Rroxscaffold_1G00071570 Rroxscaffold_2G00084360 Rroxscaffold_2G00084370 Rroxscaffold_2G00088550 Rroxscaffold_2G00088560 Rroxscaffold_2G00089850 Rroxscaffold_2G00095470 Rroxscaffold_2G00103510 Rroxscaffold_2G00114380 Rroxscaffold_2G00119580 Rroxscaffold_2G00122990 Rroxscaffold_2G00125720 Rroxscaffold_3G00223380 Rroxscaffold_3G00230410 Rroxscaffold_3G00233640 Rroxscaffold_3G00234580 Rroxscaffold_3G00241070 Rroxscaffold_4G00282590 Rroxscaffold_4G00309420 Rroxscaffold_4G00309430 Rroxscaffold_4G00314030 Rroxscaffold_4G00314610 Rroxscaffold_4G00316420 Rroxscaffold_4G00319130 Rroxscaffold_4G00319140 Rroxscaffold_4G00319350 Rroxscaffold_4G00324170 Rroxscaffold_4G00324230 Rroxscaffold_5G00346540 Rroxscaffold_5G00346580 Rroxscaffold_5G00346790 Rroxscaffold_5G00349270 Rroxscaffold_5G00350530 Rroxscaffold_5G00373500 Rroxscaffold_5G00378950 Rroxscaffold_5G00378960 Rroxscaffold_5G00381870 Rroxscaffold_6G00388230 Rroxscaffold_6G00389700 Rroxscaffold_6G00389810 Rroxscaffold_6G00391690 Rroxscaffold_6G00391820 Rroxscaffold_6G00391830 Rroxscaffold_6G00393500 Rroxscaffold_6G00396180 Rroxscaffold_6G00396460 Rroxscaffold_6G00418900 Rroxscaffold_6G00423330 Rroxscaffold_7G00173340 Rroxscaffold_7G00176630 Rroxscaffold_7G00181910 Rroxscaffold_7G00191850 Rroxscaffold_7G00199230 Rroxscaffold_7G00199250 Rroxscaffold_7G00203720 Rroxscaffold_7G00204410 Rroxscaffold_7G00204420 Rroxscaffold_7G00212090 Rroxscaffold_7G00215450
rosa_rugosa Rorug07G0321500
rosa_samantha Rh3BG349100 Rh4AG240700
rosa_wichuraiana Rw0G011180 Rw1G003000 Rw5G028290 Rw6G011280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 758
AciI CCGC 4 cut(s) 43, 129, 470, 518
AclWI GGATC 3 cut(s) 262, 649, 731
AcoI YGGCCR 3 cut(s) 118, 201, 237
AcsI RAATTY 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 3 cut(s) 420, 732, 1050
AfiI CCNNNNNNNGG 3 cut(s) 196, 314, 758
AgeI ACCGGT 1 cut(s) 279
AgsI TTSAA 7 cut(s) 329, 383, 425, 479, 527, 591, 617
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 7 cut(s) 111, 304, 667, 841, 908, 949, 987
AluI AGCT 7 cut(s) 111, 304, 667, 841, 908, 949, 987
Alw21I GWGCWC 3 cut(s) 113, 698, 808
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 3 cut(s) 262, 649, 731
AoxI GGCC 4 cut(s) 118, 201, 237, 414
ApoI RAATTY 1 cut(s) 185
AsiGI ACCGGT 1 cut(s) 279
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 170, 793, 808
AxyI CCTNAGG 1 cut(s) 672
BanII GRGCYC 1 cut(s) 113
Bbv12I GWGCWC 3 cut(s) 113, 698, 808
BccI CCATC 4 cut(s) 198, 666, 778, 834
BceAI ACGGC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciVI GTATCC 1 cut(s) 1071
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 2 cut(s) 360, 912
BfuI GTATCC 1 cut(s) 1071
BlpI GCTNAGC 1 cut(s) 983
Bme1390I CCNGG 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 4 cut(s) 168, 378, 505, 876
Bpu10I CCTNAGC 1 cut(s) 1024
Bpu1102I GCTNAGC 1 cut(s) 983
BpuEI CTTGAG 2 cut(s) 819, 905
BpuMI CCSGG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 142, 154, 570, 623, 648
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 314, 758
Bse118I RCCGGY 4 cut(s) 116, 171, 235, 279
Bse21I CCTNAGG 1 cut(s) 672
Bse8I GATNNNNATC 1 cut(s) 722
BseDI CCNNGG 5 cut(s) 142, 154, 570, 623, 648
BseGI GGATG 3 cut(s) 355, 451, 520
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 3 cut(s) 196, 314, 758
BseRI GAGGAG 5 cut(s) 222, 280, 380, 455, 524
BseX3I CGGCCG 2 cut(s) 118, 237
Bsh1285I CGRYCG 3 cut(s) 121, 176, 240
BshFI GGCC 4 cut(s) 120, 203, 239, 416
BshTI ACCGGT 1 cut(s) 279
BsiEI CGRYCG 3 cut(s) 121, 176, 240
BsiHKAI GWGCWC 3 cut(s) 113, 698, 808
BsiSI CCGG 8 cut(s) 46, 55, 117, 154, 172, 204, 236, 280
BslFI GGGAC 2 cut(s) 301, 1005
BslI CCNNNNNNNGG 3 cut(s) 196, 314, 758
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 2 cut(s) 301, 1005
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 4 cut(s) 120, 203, 239, 416
Bso31I GGTCTC 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 113, 698, 808
Bsp143I GATC 3 cut(s) 254, 654, 723
Bsp1720I GCTNAGC 1 cut(s) 983
Bsp19I CCATGG 2 cut(s) 570, 648
BspACI CCGC 4 cut(s) 43, 129, 470, 518
BspANI GGCC 4 cut(s) 120, 203, 239, 416
BspHI TCATGA 1 cut(s) 661
BspPI GGATC 3 cut(s) 262, 649, 731
BspQI GCTCTTC 1 cut(s) 612
BspTNI GGTCTC 1 cut(s) 33
BsrFI RCCGGY 4 cut(s) 116, 171, 235, 279
BssAI RCCGGY 4 cut(s) 116, 171, 235, 279
BssECI CCNNGG 5 cut(s) 142, 154, 570, 623, 648
BssMI GATC 3 cut(s) 254, 654, 723
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 3 cut(s) 570, 623, 648
Bst4CI ACNGT 2 cut(s) 86, 976
Bst6I CTCTTC 6 cut(s) 156, 240, 339, 573, 612, 926
BstACI GRCGYC 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 4 cut(s) 300, 672, 983, 1024
BstDSI CCRYGG 3 cut(s) 142, 570, 648
BstEII GGTNACC 1 cut(s) 86
BstF5I GGATG 3 cut(s) 355, 451, 520
BstKTI GATC 3 cut(s) 257, 657, 726
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 3 cut(s) 254, 654, 723
BstMCI CGRYCG 3 cut(s) 121, 176, 240
BstMWI GCNNNNNNNGC 3 cut(s) 51, 117, 905
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 654
BstXI CCANNNNNNTGG 2 cut(s) 32, 649
BstYI RGATCY 1 cut(s) 654
BstZI CGGCCG 2 cut(s) 118, 237
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 1 cut(s) 1071
BsuRI GGCC 4 cut(s) 120, 203, 239, 416
BtgI CCRYGG 3 cut(s) 142, 570, 648
BtsCI GGATG 3 cut(s) 355, 451, 520
Cac8I GCNNGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 661
Cfr10I RCCGGY 4 cut(s) 116, 171, 235, 279
CseI GACGC 1 cut(s) 30
Csp6I GTAC 3 cut(s) 419, 731, 1049
CspAI ACCGGT 1 cut(s) 279
CspCI CAANNNNNGTGG 2 cut(s) 865, 900
CviAII CATG 8 cut(s) 194, 428, 571, 649, 662, 979, 1004, 1068
CviQI GTAC 3 cut(s) 419, 731, 1049
DdeI CTNAG 4 cut(s) 300, 672, 983, 1024
DpnI GATC 3 cut(s) 256, 656, 725
DpnII GATC 3 cut(s) 254, 654, 723
EaeI YGGCCR 3 cut(s) 118, 201, 237
EagI CGGCCG 2 cut(s) 118, 237
Eam1104I CTCTTC 6 cut(s) 156, 240, 339, 573, 612, 926
EarI CTCTTC 6 cut(s) 156, 240, 339, 573, 612, 926
Ecl136II GAGCTC 1 cut(s) 111
EclXI CGGCCG 2 cut(s) 118, 237
Eco130I CCWWGG 3 cut(s) 570, 623, 648
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 33
Eco52I CGGCCG 2 cut(s) 118, 237
Eco53kI GAGCTC 1 cut(s) 111
Eco81I CCTNAGG 1 cut(s) 672
Eco91I GGTNACC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 111
EcoO65I GGTNACC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 185
EcoT14I CCWWGG 3 cut(s) 570, 623, 648
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 3 cut(s) 570, 623, 648
FaeI CATG 8 cut(s) 197, 431, 574, 652, 665, 982, 1007, 1071
FaqI GGGAC 2 cut(s) 301, 1005
FatI CATG 8 cut(s) 193, 427, 570, 648, 661, 978, 1003, 1067
FokI GGATG 3 cut(s) 362, 458, 527
FriOI GRGCYC 1 cut(s) 113
FspBI CTAG 2 cut(s) 360, 912
HaeIII GGCC 4 cut(s) 120, 203, 239, 416
HapII CCGG 8 cut(s) 46, 55, 117, 154, 172, 204, 236, 280
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 8 cut(s) 197, 431, 574, 652, 665, 982, 1007, 1071
HindIII AAGCTT 2 cut(s) 302, 947
HinfI GANTC 7 cut(s) 49, 335, 371, 431, 583, 718, 1018
HpaII CCGG 8 cut(s) 46, 55, 117, 154, 172, 204, 236, 280
HphI GGTGA 3 cut(s) 170, 793, 808
Hpy188I TCNGA 6 cut(s) 108, 222, 340, 376, 436, 723
Hpy188III TCNNGA 4 cut(s) 286, 662, 836, 959
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 5 cut(s) 26, 101, 597, 883, 889
HpyCH4III ACNGT 2 cut(s) 86, 976
HpyCH4IV ACGT 2 cut(s) 290, 1010
HpyCH4V TGCA 2 cut(s) 391, 812
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 117, 905
HpyF3I CTNAG 4 cut(s) 300, 672, 983, 1024
HpySE526I ACGT 2 cut(s) 290, 1010
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 8 cut(s) 197, 431, 574, 652, 665, 982, 1007, 1071
Kzo9I GATC 3 cut(s) 254, 654, 723
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 3 cut(s) 116, 803, 913
LpnPI CCDG 8 cut(s) 59, 68, 130, 167, 185, 217, 249, 293
LweI GCATC 4 cut(s) 168, 378, 505, 876
MaeI CTAG 2 cut(s) 360, 912
MaeII ACGT 2 cut(s) 290, 1010
MaeIII GTNAC 3 cut(s) 86, 149, 291
MalI GATC 3 cut(s) 256, 656, 725
MboI GATC 3 cut(s) 254, 654, 723
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 3 cut(s) 113, 698, 808
MluCI AATT 6 cut(s) 26, 102, 185, 612, 921, 966
MlyI GAGTC 2 cut(s) 592, 1027
MseI TTAA 3 cut(s) 708, 755, 942
MslI CAYNNNNRTG 2 cut(s) 147, 647
MspI CCGG 8 cut(s) 46, 55, 117, 154, 172, 204, 236, 280
MspR9I CCNGG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 472
MwoI GCNNNNNNNGC 3 cut(s) 51, 117, 905
NciI CCSGG 1 cut(s) 155
NcoI CCATGG 2 cut(s) 570, 648
NdeII GATC 3 cut(s) 254, 654, 723
NlaIII CATG 8 cut(s) 197, 431, 574, 652, 665, 982, 1007, 1071
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 149
OliI CACNNNNGTG 1 cut(s) 147
PagI TCATGA 1 cut(s) 661
PciSI GCTCTTC 1 cut(s) 612
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 5 cut(s) 49, 335, 371, 431, 718
PflMI CCANNNNNTGG 1 cut(s) 758
PinAI ACCGGT 1 cut(s) 279
PleI GAGTC 2 cut(s) 591, 1026
PpsI GAGTC 2 cut(s) 591, 1026
Psp124BI GAGCTC 1 cut(s) 113
PspEI GGTNACC 1 cut(s) 86
PsuI RGATCY 1 cut(s) 654
RsaI GTAC 3 cut(s) 420, 732, 1050
RsaNI GTAC 3 cut(s) 419, 731, 1049
RseI CAYNNNNRTG 2 cut(s) 147, 647
SacI GAGCTC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 3 cut(s) 708, 755, 942
Sau3AI GATC 3 cut(s) 254, 654, 723
SchI GAGTC 2 cut(s) 592, 1027
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 3 cut(s) 113, 698, 808
SfaNI GCATC 4 cut(s) 168, 378, 505, 876
SmiMI CAYNNNNRTG 2 cut(s) 147, 647
SmlI CTYRAG 3 cut(s) 834, 884, 1052
SmoI CTYRAG 3 cut(s) 834, 884, 1052
Sse9I AATT 6 cut(s) 26, 102, 185, 612, 921, 966
SsiI CCGC 4 cut(s) 43, 129, 470, 518
SspI AATATT 1 cut(s) 690
SspMI CTAG 2 cut(s) 360, 912
SstI GAGCTC 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 3 cut(s) 570, 623, 648
TaaI ACNGT 2 cut(s) 86, 976
TaiI ACGT 2 cut(s) 293, 1013
TaqI TCGA 6 cut(s) 19, 62, 176, 507, 561, 958
TasI AATT 6 cut(s) 26, 102, 185, 612, 921, 966
TfiI GAWTC 5 cut(s) 49, 335, 371, 431, 718
Tru1I TTAA 3 cut(s) 708, 755, 942
Tru9I TTAA 3 cut(s) 708, 755, 942
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 5 cut(s) 357, 397, 493, 541, 621
Van91I CCANNNNNTGG 1 cut(s) 758
XapI RAATTY 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XspI CTAG 2 cut(s) 360, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.